Wall clock time and date at job start Tue Mar 31 2020 18:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47223 * 2 1 4 4 N 1.46499 * 109.47213 * 119.99863 * 2 1 3 5 5 C 1.34769 * 120.00380 * 275.00006 * 4 2 1 6 6 O 1.21594 * 119.99898 * 0.02562 * 5 4 2 7 7 C 1.47545 * 120.00326 * 180.02562 * 5 4 2 8 8 C 1.39769 * 120.13786 * 359.97438 * 7 5 4 9 9 C 1.37753 * 119.95017 * 179.97438 * 8 7 5 10 10 C 1.38483 * 120.33112 * 0.31649 * 9 8 7 11 11 C 1.38594 * 120.40865 * 359.48016 * 10 9 8 12 12 C 1.38995 * 119.90831 * 0.38950 * 11 10 9 13 13 O 1.35813 * 120.86301 * 180.17164 * 12 11 10 14 14 C 1.43172 * 116.74485 * 342.66759 * 13 12 11 15 15 C 1.53469 * 108.25506 * 46.17025 * 14 13 12 16 16 O 1.36138 * 119.37033 * 179.97438 * 11 10 9 17 17 C 1.52999 * 109.47029 * 240.00446 * 2 1 3 18 18 C 1.53947 * 113.74245 * 158.74126 * 17 2 1 19 19 N 1.47815 * 86.03666 * 222.07949 * 18 17 2 20 20 C 1.36932 * 134.45886 * 204.64115 * 19 18 17 21 21 H 1.07999 * 120.00361 * 173.35086 * 20 19 18 22 22 C 1.38810 * 119.99723 * 353.35026 * 20 19 18 23 23 N 1.31620 * 120.00439 * 5.06168 * 22 20 19 24 24 Si 1.86806 * 119.99847 * 185.06217 * 22 20 19 25 25 H 1.48496 * 109.47109 * 94.98832 * 24 22 20 26 26 H 1.48506 * 109.46924 * 214.98861 * 24 22 20 27 27 H 1.48495 * 109.47032 * 334.98696 * 24 22 20 28 28 C 1.47584 * 91.04673 * 24.54854 * 19 18 17 29 29 H 1.09000 * 109.47041 * 59.99540 * 1 2 3 30 30 H 1.08997 * 109.46807 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46861 * 300.00006 * 1 2 3 32 32 H 0.97005 * 119.99382 * 95.00082 * 4 2 1 33 33 H 1.07997 * 120.02605 * 0.02562 * 8 7 5 34 34 H 1.08000 * 119.83135 * 180.02562 * 9 8 7 35 35 H 1.07999 * 119.79821 * 179.73338 * 10 9 8 36 36 H 1.09000 * 109.70514 * 286.47289 * 14 13 12 37 37 H 1.09001 * 109.70288 * 165.85848 * 14 13 12 38 38 H 1.08994 * 109.71069 * 180.65413 * 15 14 13 39 39 H 1.08994 * 109.74657 * 60.04012 * 15 14 13 40 40 H 1.09004 * 112.94083 * 290.33102 * 17 2 1 41 41 H 1.08998 * 113.77083 * 336.34697 * 18 17 2 42 42 H 1.09001 * 113.76997 * 107.74532 * 18 17 2 43 43 H 0.96998 * 120.00044 * 179.97438 * 23 22 20 44 44 H 1.09005 * 113.76492 * 221.14739 * 28 19 18 45 45 H 1.09001 * 113.87174 * 89.76804 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8575 1.1614 2.4118 7 6 2.6395 -0.7137 3.5617 8 6 2.9728 -2.0697 3.5022 9 6 3.4326 -2.7150 4.6290 10 6 3.5608 -2.0284 5.8248 11 6 3.2385 -0.6825 5.8990 12 6 2.7757 -0.0174 4.7696 13 8 2.4575 1.3020 4.8195 14 6 2.2509 1.8662 6.1190 15 6 3.3941 1.4023 7.0318 16 8 3.3720 -0.0284 7.0854 17 6 2.0400 -0.7212 -1.2493 18 6 3.4848 -0.3520 -1.6317 19 7 2.9978 -0.3176 -3.0269 20 6 3.5874 -0.4755 -4.2527 21 1 2.9790 -0.5088 -5.1444 22 6 4.9672 -0.5929 -4.3492 23 7 5.7006 -0.6526 -3.2579 24 14 5.7832 -0.6661 -6.0280 25 1 6.2264 0.6951 -6.4227 26 1 6.9588 -1.5716 -5.9679 27 1 4.8131 -1.1802 -7.0279 28 6 1.6213 -0.0471 -2.5684 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6318 1.1525 33 1 2.8706 -2.6111 2.5733 34 1 3.6899 -3.7628 4.5808 35 1 3.9181 -2.5439 6.7040 36 1 1.2974 1.5237 6.5210 37 1 2.2526 2.9541 6.0518 38 1 3.2536 1.8098 8.0329 39 1 4.3482 1.7404 6.6278 40 1 1.8528 -1.7948 -1.2263 41 1 3.8048 0.6191 -1.2540 42 1 4.2071 -1.1447 -1.4368 43 1 6.6647 -0.7350 -3.3254 44 1 0.8586 -0.5968 -3.1200 45 1 1.3908 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969794081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:30 Heat of formation + Delta-G solvation = -20.814776 kcal Electronic energy + Delta-G solvation = -28464.763579 eV Core-core repulsion = 24450.144638 eV Total energy + Delta-G solvation = -4014.618941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.54229 -39.69360 -38.17299 -37.61862 -37.17839 -34.69021 -32.31145 -31.54597 -31.34930 -29.80039 -28.65787 -27.47732 -25.23726 -24.79549 -24.27937 -23.61867 -21.42901 -21.22870 -20.22639 -19.42544 -18.71489 -17.66448 -17.46812 -16.70955 -16.43156 -15.87108 -15.69916 -15.28548 -14.91860 -14.85699 -14.54942 -14.45002 -14.20030 -14.02470 -13.79305 -13.49604 -13.20060 -12.93790 -12.42495 -12.38265 -12.17320 -11.98694 -11.62459 -11.42794 -11.34760 -11.26060 -11.25177 -10.89199 -10.87124 -10.69719 -10.30355 -9.92319 -9.72193 -9.57230 -9.34763 -8.93182 -8.76085 -8.65289 -8.30972 -6.82725 -5.75056 -3.06123 0.65900 1.07925 2.71774 2.96405 2.98732 3.31983 3.40949 3.46046 3.47944 3.74380 3.94524 4.36996 4.48079 4.52308 4.59162 4.73542 4.83111 4.88948 5.06145 5.14631 5.18788 5.23523 5.30652 5.35230 5.46183 5.57730 5.71433 5.78262 5.81362 5.86763 5.99277 6.08819 6.13396 6.30297 6.32568 6.41339 6.46352 6.64490 6.64867 6.72937 6.88081 7.16344 7.27388 7.39804 7.59803 7.77321 8.00784 8.48463 9.07454 9.73765 10.64480 11.42591 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.002606 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.740372 B =10743.133126 C =11236.225810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.152 3.848 3 H 0.088 0.912 4 N -0.714 5.714 5 C 0.558 3.442 6 O -0.522 6.522 7 C -0.130 4.130 8 C -0.080 4.080 9 C -0.125 4.125 10 C -0.091 4.091 11 C 0.035 3.965 12 C 0.108 3.892 13 O -0.268 6.268 14 C 0.015 3.985 15 C 0.019 3.981 16 O -0.307 6.307 17 C -0.147 4.147 18 C 0.174 3.826 19 N -0.613 5.613 20 C -0.223 4.223 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.919 5.919 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.130 3.870 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.397 0.603 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.028 0.972 42 H 0.067 0.933 43 H 0.253 0.747 44 H 0.044 0.956 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.752 -1.874 22.857 24.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.106 0.894 4 N -0.366 5.366 5 C 0.344 3.656 6 O -0.398 6.398 7 C -0.134 4.134 8 C -0.099 4.099 9 C -0.143 4.143 10 C -0.110 4.110 11 C -0.010 4.010 12 C 0.060 3.940 13 O -0.181 6.181 14 C -0.061 4.061 15 C -0.057 4.057 16 O -0.222 6.222 17 C -0.167 4.167 18 C 0.049 3.951 19 N -0.339 5.339 20 C -0.351 4.351 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.566 5.566 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.206 1.206 28 C 0.003 3.997 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.232 0.768 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.095 0.905 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.046 0.954 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.705 -0.984 22.666 23.960 hybrid contribution 0.741 -0.186 -0.755 1.074 sum -6.964 -1.170 21.911 23.021 Atomic orbital electron populations 1.22130 0.95739 1.01690 1.02053 1.21082 0.93406 0.97615 0.83133 0.89426 1.45985 1.67151 1.13977 1.09470 1.17883 0.78309 0.86600 0.82772 1.90804 1.49383 1.14994 1.84633 1.19461 1.07238 0.93826 0.92889 1.21201 0.97132 0.92239 0.99326 1.20838 1.01365 1.00564 0.91532 1.20581 1.00070 0.91190 0.99163 1.18786 1.03431 0.93440 0.85364 1.18903 0.97166 0.84671 0.93259 1.86633 1.83845 1.19260 1.28322 1.23716 0.98366 1.00977 0.83036 1.23674 0.99667 0.79364 1.02960 1.86314 1.89470 1.19795 1.26618 1.23829 1.00943 0.99608 0.92331 1.22232 0.91206 0.98468 0.83241 1.45992 1.03537 1.82423 1.01979 1.19025 0.89839 1.42812 0.83422 0.90258 1.24821 0.95932 1.02483 0.97193 1.69836 1.04816 1.55969 1.25934 0.86148 0.79104 0.77431 0.83402 1.21661 1.21735 1.20574 1.22491 0.89698 0.96618 0.90853 0.91460 0.92774 0.92786 0.76798 0.84400 0.84347 0.84505 0.90460 0.85850 0.86003 0.90274 0.89440 0.95423 0.91479 0.93681 0.93824 0.94765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.31 37.16 0.35 -1.83 16 2 C 0.15 2.43 2.38 -67.93 -0.16 2.27 16 3 H 0.09 1.63 7.42 -51.93 -0.39 1.25 16 4 N -0.71 -10.34 5.03 -54.84 -0.28 -10.62 16 5 C 0.56 9.02 7.73 -12.47 -0.10 8.92 16 6 O -0.52 -10.20 14.76 -16.87 -0.25 -10.45 16 7 C -0.13 -1.80 5.89 -104.84 -0.62 -2.41 16 8 C -0.08 -0.84 9.53 -39.19 -0.37 -1.22 16 9 C -0.12 -1.11 10.02 -39.67 -0.40 -1.51 16 10 C -0.09 -0.88 9.95 -39.36 -0.39 -1.28 16 11 C 0.03 0.41 6.49 -39.17 -0.25 0.15 16 12 C 0.11 1.49 6.51 -38.61 -0.25 1.23 16 13 O -0.27 -3.83 8.42 -47.39 -0.40 -4.23 16 14 C 0.01 0.13 7.26 37.40 0.27 0.40 16 15 C 0.02 0.15 7.26 37.40 0.27 0.42 16 16 O -0.31 -3.25 10.42 -33.02 -0.34 -3.60 16 17 C -0.15 -2.66 3.47 -89.70 -0.31 -2.97 16 18 C 0.17 4.11 6.99 -2.84 -0.02 4.09 16 19 N -0.61 -15.90 3.70 -177.69 -0.66 -16.56 16 20 C -0.22 -6.35 10.70 -15.06 -0.16 -6.51 16 21 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 23 N -0.92 -27.57 11.51 55.49 0.64 -26.93 16 24 Si 0.91 22.36 29.56 -169.99 -5.02 17.34 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 C 0.13 2.64 7.64 -2.97 -0.02 2.62 16 29 H 0.07 0.89 7.52 -51.93 -0.39 0.50 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.40 4.75 6.63 -40.82 -0.27 4.48 16 33 H 0.14 1.15 6.40 -52.49 -0.34 0.82 16 34 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.03 0.70 7.99 -51.93 -0.41 0.29 16 42 H 0.07 1.73 7.37 -51.93 -0.38 1.34 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 370.14 15.07 5.58 5.58 Total: -1.00 -36.14 370.14 -9.37 -45.51 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.37 Total: 1.90 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -2.26 Total: 2.06 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.29 Total: -54.11 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.99 Total: -18.28 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.14 -9.37 -45.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969794081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.697 kcal (2) G-P(sol) polarization free energy of solvation -36.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds