Wall clock time and date at job start Tue Mar 31 2020 18:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47223 * 2 1 4 4 N 1.46499 * 109.47213 * 119.99863 * 2 1 3 5 5 C 1.34769 * 120.00380 * 275.00006 * 4 2 1 6 6 O 1.21594 * 119.99898 * 0.02562 * 5 4 2 7 7 C 1.47545 * 120.00326 * 180.02562 * 5 4 2 8 8 C 1.39769 * 120.13786 * 359.97438 * 7 5 4 9 9 C 1.37753 * 119.95017 * 179.97438 * 8 7 5 10 10 C 1.38483 * 120.33112 * 0.31649 * 9 8 7 11 11 C 1.38594 * 120.40865 * 359.48016 * 10 9 8 12 12 C 1.38995 * 119.90831 * 0.38950 * 11 10 9 13 13 O 1.35813 * 120.86301 * 180.17164 * 12 11 10 14 14 C 1.43172 * 116.74485 * 342.66759 * 13 12 11 15 15 C 1.53469 * 108.25506 * 46.17025 * 14 13 12 16 16 O 1.36138 * 119.37033 * 179.97438 * 11 10 9 17 17 C 1.52999 * 109.47029 * 240.00446 * 2 1 3 18 18 C 1.53947 * 113.74245 * 158.74126 * 17 2 1 19 19 N 1.47815 * 86.03666 * 222.07949 * 18 17 2 20 20 C 1.36932 * 134.45886 * 204.64115 * 19 18 17 21 21 H 1.07999 * 120.00361 * 173.35086 * 20 19 18 22 22 C 1.38810 * 119.99723 * 353.35026 * 20 19 18 23 23 N 1.31620 * 120.00439 * 5.06168 * 22 20 19 24 24 Si 1.86806 * 119.99847 * 185.06217 * 22 20 19 25 25 H 1.48496 * 109.47109 * 94.98832 * 24 22 20 26 26 H 1.48506 * 109.46924 * 214.98861 * 24 22 20 27 27 H 1.48495 * 109.47032 * 334.98696 * 24 22 20 28 28 C 1.47584 * 91.04673 * 24.54854 * 19 18 17 29 29 H 1.09000 * 109.47041 * 59.99540 * 1 2 3 30 30 H 1.08997 * 109.46807 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46861 * 300.00006 * 1 2 3 32 32 H 0.97005 * 119.99382 * 95.00082 * 4 2 1 33 33 H 1.07997 * 120.02605 * 0.02562 * 8 7 5 34 34 H 1.08000 * 119.83135 * 180.02562 * 9 8 7 35 35 H 1.07999 * 119.79821 * 179.73338 * 10 9 8 36 36 H 1.09000 * 109.70514 * 286.47289 * 14 13 12 37 37 H 1.09001 * 109.70288 * 165.85848 * 14 13 12 38 38 H 1.08994 * 109.71069 * 180.65413 * 15 14 13 39 39 H 1.08994 * 109.74657 * 60.04012 * 15 14 13 40 40 H 1.09004 * 112.94083 * 290.33102 * 17 2 1 41 41 H 1.08998 * 113.77083 * 336.34697 * 18 17 2 42 42 H 1.09001 * 113.76997 * 107.74532 * 18 17 2 43 43 H 0.96998 * 120.00044 * 179.97438 * 23 22 20 44 44 H 1.09005 * 113.76492 * 221.14739 * 28 19 18 45 45 H 1.09001 * 113.87174 * 89.76804 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8575 1.1614 2.4118 7 6 2.6395 -0.7137 3.5617 8 6 2.9728 -2.0697 3.5022 9 6 3.4326 -2.7150 4.6290 10 6 3.5608 -2.0284 5.8248 11 6 3.2385 -0.6825 5.8990 12 6 2.7757 -0.0174 4.7696 13 8 2.4575 1.3020 4.8195 14 6 2.2509 1.8662 6.1190 15 6 3.3941 1.4023 7.0318 16 8 3.3720 -0.0284 7.0854 17 6 2.0400 -0.7212 -1.2493 18 6 3.4848 -0.3520 -1.6317 19 7 2.9978 -0.3176 -3.0269 20 6 3.5874 -0.4755 -4.2527 21 1 2.9790 -0.5088 -5.1444 22 6 4.9672 -0.5929 -4.3492 23 7 5.7006 -0.6526 -3.2579 24 14 5.7832 -0.6661 -6.0280 25 1 6.2264 0.6951 -6.4227 26 1 6.9588 -1.5716 -5.9679 27 1 4.8131 -1.1802 -7.0279 28 6 1.6213 -0.0471 -2.5684 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6318 1.1525 33 1 2.8706 -2.6111 2.5733 34 1 3.6899 -3.7628 4.5808 35 1 3.9181 -2.5439 6.7040 36 1 1.2974 1.5237 6.5210 37 1 2.2526 2.9541 6.0518 38 1 3.2536 1.8098 8.0329 39 1 4.3482 1.7404 6.6278 40 1 1.8528 -1.7948 -1.2263 41 1 3.8048 0.6191 -1.2540 42 1 4.2071 -1.1447 -1.4368 43 1 6.6647 -0.7350 -3.3254 44 1 0.8586 -0.5968 -3.1200 45 1 1.3908 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969794081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:29 Heat of formation + Delta-G solvation = -44.824488 kcal Electronic energy + Delta-G solvation = -28465.804718 eV Core-core repulsion = 24450.144638 eV Total energy + Delta-G solvation = -4015.660080 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.37245 -40.95029 -39.68196 -38.49790 -38.11480 -36.14134 -34.20299 -32.71169 -32.13075 -30.98475 -29.44868 -29.32809 -26.70402 -25.89249 -25.58738 -25.01445 -22.89172 -22.03005 -21.41807 -20.83910 -19.77500 -18.76810 -18.52275 -18.35327 -17.47125 -17.12920 -16.89099 -16.53637 -16.12221 -15.75483 -15.69758 -15.66245 -15.49829 -15.17405 -14.89705 -14.74381 -14.66571 -14.06927 -13.94369 -13.43442 -13.28688 -13.14315 -13.08474 -12.89974 -12.84844 -12.68772 -12.51715 -12.19563 -12.04665 -11.96337 -11.72567 -11.69569 -11.48699 -11.23853 -10.87373 -10.76560 -10.07467 -9.67768 -9.14223 -8.90671 -7.91522 -5.24179 -0.24251 0.26876 1.44806 1.47366 1.56027 1.85155 2.01808 2.17881 2.27338 2.47531 2.78241 3.22213 3.28995 3.39373 3.57831 3.75079 3.85796 3.89197 3.90990 3.99887 4.15176 4.24293 4.31129 4.35224 4.48678 4.53992 4.57244 4.60114 4.67089 4.75515 4.84660 4.87596 4.99543 5.03298 5.05729 5.13142 5.26088 5.34083 5.35043 5.49305 5.56712 5.61236 5.67832 5.87807 5.93267 6.34375 6.62003 6.91667 7.29413 7.60927 8.57717 9.26108 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.002606 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.740372 B =10743.133126 C =11236.225810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.161 3.839 3 H 0.055 0.945 4 N -0.706 5.706 5 C 0.555 3.445 6 O -0.566 6.566 7 C -0.160 4.160 8 C -0.078 4.078 9 C -0.115 4.115 10 C -0.085 4.085 11 C 0.023 3.977 12 C 0.084 3.916 13 O -0.306 6.306 14 C 0.006 3.994 15 C 0.019 3.981 16 O -0.314 6.314 17 C -0.108 4.108 18 C 0.171 3.829 19 N -0.644 5.644 20 C -0.235 4.235 21 H 0.086 0.914 22 C -0.069 4.069 23 N -0.953 5.953 24 Si 0.977 3.023 25 H -0.292 1.292 26 H -0.293 1.293 27 H -0.264 1.264 28 C 0.130 3.870 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.411 0.589 33 H 0.158 0.842 34 H 0.176 0.824 35 H 0.164 0.836 36 H 0.082 0.918 37 H 0.142 0.858 38 H 0.160 0.840 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.000 1.000 42 H 0.040 0.960 43 H 0.248 0.752 44 H 0.067 0.933 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.674 -3.809 23.592 25.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.055 3.945 3 H 0.074 0.926 4 N -0.358 5.358 5 C 0.343 3.657 6 O -0.446 6.446 7 C -0.164 4.164 8 C -0.097 4.097 9 C -0.133 4.133 10 C -0.104 4.104 11 C -0.022 4.022 12 C 0.037 3.963 13 O -0.219 6.219 14 C -0.069 4.069 15 C -0.056 4.056 16 O -0.229 6.229 17 C -0.128 4.128 18 C 0.045 3.955 19 N -0.371 5.371 20 C -0.364 4.364 21 H 0.104 0.896 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.805 3.195 25 H -0.219 1.219 26 H -0.220 1.220 27 H -0.188 1.188 28 C 0.005 3.995 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.248 0.752 33 H 0.176 0.824 34 H 0.194 0.806 35 H 0.181 0.819 36 H 0.100 0.900 37 H 0.160 0.840 38 H 0.177 0.823 39 H 0.093 0.907 40 H 0.128 0.872 41 H 0.017 0.983 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.086 0.914 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.665 -2.943 23.403 25.129 hybrid contribution 1.017 0.447 -0.906 1.433 sum -7.648 -2.496 22.497 23.893 Atomic orbital electron populations 1.22037 0.93266 1.03211 1.02092 1.20830 0.95105 0.95707 0.82818 0.92641 1.45850 1.66791 1.14515 1.08647 1.18326 0.77504 0.86212 0.83654 1.90766 1.51475 1.16944 1.85419 1.19470 1.09662 0.95299 0.92001 1.21496 0.96309 0.90941 1.00946 1.21276 0.99549 1.02071 0.90397 1.21038 0.98499 0.90393 1.00467 1.19031 1.03721 0.94333 0.85160 1.19195 0.98212 0.84817 0.94113 1.86561 1.84190 1.19948 1.31216 1.24020 0.99195 1.01947 0.81698 1.23903 0.98870 0.78126 1.04663 1.86292 1.89406 1.21134 1.26109 1.23461 0.96126 1.00731 0.92450 1.22104 0.93955 0.96244 0.83177 1.46422 1.06058 1.82677 1.01913 1.19461 0.90399 1.41691 0.84817 0.89619 1.25684 0.96683 1.03022 1.00801 1.70028 1.04532 1.57587 1.28007 0.85075 0.78003 0.76979 0.79404 1.21887 1.21976 1.18809 1.22681 0.87756 0.97449 0.91636 0.90643 0.90435 0.93568 0.75170 0.82424 0.80622 0.81859 0.89968 0.84041 0.82253 0.90652 0.87199 0.98256 0.94162 0.94335 0.91438 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.31 71.98 0.67 -3.17 16 2 C 0.16 5.11 2.38 44.99 0.11 5.21 16 3 H 0.06 2.16 7.42 -2.39 -0.02 2.14 16 4 N -0.71 -20.36 5.03 -445.69 -2.24 -22.60 16 5 C 0.55 18.52 7.73 86.70 0.67 19.19 16 6 O -0.57 -23.42 14.76 17.17 0.25 -23.17 16 7 C -0.16 -4.48 5.89 -20.00 -0.12 -4.60 16 8 C -0.08 -1.53 9.53 22.53 0.21 -1.31 16 9 C -0.12 -1.72 10.02 22.21 0.22 -1.50 16 10 C -0.09 -1.45 9.95 22.41 0.22 -1.23 16 11 C 0.02 0.51 6.49 22.54 0.15 0.66 16 12 C 0.08 2.38 6.51 22.90 0.15 2.53 16 13 O -0.31 -9.20 8.42 -64.45 -0.54 -9.74 16 14 C 0.01 0.11 7.26 72.14 0.52 0.64 16 15 C 0.02 0.28 7.26 72.14 0.52 0.80 16 16 O -0.31 -6.32 10.42 -82.84 -0.86 -7.18 16 17 C -0.11 -3.81 3.47 -10.14 -0.04 -3.84 16 18 C 0.17 8.30 6.99 86.44 0.60 8.91 16 19 N -0.64 -33.58 3.70 -716.09 -2.65 -36.23 16 20 C -0.24 -13.41 10.70 84.03 0.90 -12.51 16 21 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16 22 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 23 N -0.95 -58.75 11.51 21.65 0.25 -58.50 16 24 Si 0.98 46.37 29.56 68.60 2.03 48.39 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 27 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 28 C 0.13 5.12 7.64 86.48 0.66 5.78 16 29 H 0.07 1.84 7.52 -2.39 -0.02 1.82 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 32 H 0.41 9.34 6.63 -92.70 -0.61 8.72 16 33 H 0.16 2.28 6.40 -2.91 -0.02 2.26 16 34 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.16 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.11 3.45 8.14 -2.38 -0.02 3.43 16 41 H 0.00 -0.02 7.99 -2.39 -0.02 -0.04 16 42 H 0.04 2.15 7.37 -2.39 -0.02 2.13 16 43 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 44 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 45 H 0.04 1.56 8.10 -2.39 -0.02 1.54 16 Total: -1.00 -82.41 370.14 2.56 -79.85 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.40 Total: 17.15 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 5.93 Total: 12.03 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -4.64 Total: -117.33 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -1.15 Total: -40.09 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -82.41 2.56 -79.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969794081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.021 kcal (2) G-P(sol) polarization free energy of solvation -82.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds