Wall clock time and date at job start Tue Mar 31 2020 18:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21592 * 119.99904 * 0.02562 * 5 4 2 7 7 C 1.47539 * 119.99870 * 180.02562 * 5 4 2 8 8 C 1.39769 * 120.14489 * 0.02562 * 7 5 4 9 9 C 1.37747 * 119.95198 * 179.97438 * 8 7 5 10 10 C 1.38491 * 120.33456 * 0.04918 * 9 8 7 11 11 C 1.38593 * 120.40634 * 0.03875 * 10 9 8 12 12 C 1.38992 * 119.90473 * 359.57442 * 11 10 9 13 13 O 1.35813 * 120.87203 * 180.62060 * 12 11 10 14 14 C 1.43183 * 116.71357 * 342.78341 * 13 12 11 15 15 C 1.53477 * 108.22727 * 46.29781 * 14 13 12 16 16 O 1.36139 * 119.37342 * 179.61946 * 11 10 9 17 17 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 18 18 C 1.53504 * 114.20785 * 300.00220 * 17 2 1 19 19 N 1.47069 * 87.98363 * 220.34571 * 18 17 2 20 20 C 1.36941 * 136.05552 * 207.07801 * 19 18 17 21 21 H 1.08000 * 119.99396 * 7.56018 * 20 19 18 22 22 C 1.38806 * 119.99993 * 187.55101 * 20 19 18 23 23 N 1.31621 * 119.99759 * 174.37714 * 22 20 19 24 24 Si 1.86799 * 119.99972 * 354.38427 * 22 20 19 25 25 H 1.48501 * 109.46963 * 174.94900 * 24 22 20 26 26 H 1.48498 * 109.47184 * 294.94894 * 24 22 20 27 27 H 1.48507 * 109.47082 * 54.95224 * 24 22 20 28 28 C 1.47064 * 87.88742 * 27.34488 * 19 18 17 29 29 H 1.08998 * 109.47419 * 299.99803 * 1 2 3 30 30 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 31 31 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 32 32 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 33 33 H 1.07998 * 120.02167 * 359.96050 * 8 7 5 34 34 H 1.08003 * 119.83230 * 180.02562 * 9 8 7 35 35 H 1.07996 * 119.79216 * 180.02562 * 10 9 8 36 36 H 1.08999 * 109.70965 * 165.97549 * 14 13 12 37 37 H 1.09000 * 109.71249 * 286.61266 * 14 13 12 38 38 H 1.08997 * 109.70337 * 60.02408 * 15 14 13 39 39 H 1.08996 * 109.70373 * 180.60048 * 15 14 13 40 40 H 1.09002 * 113.41395 * 73.19962 * 17 2 1 41 41 H 1.08997 * 113.46758 * 105.56146 * 18 17 2 42 42 H 1.09000 * 113.51898 * 335.13170 * 18 17 2 43 43 H 0.96993 * 120.00423 * 354.88754 * 23 22 20 44 44 H 1.08993 * 113.47012 * 87.43421 * 28 19 18 45 45 H 1.09000 * 113.46758 * 217.87997 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1615 -2.4116 7 6 2.6384 -0.7140 -3.5618 8 6 2.9708 -2.0703 -3.5027 9 6 3.4287 -2.7160 -4.6300 10 6 3.5630 -2.0278 -5.8243 11 6 3.2392 -0.6822 -5.8988 12 6 2.7684 -0.0194 -4.7715 13 8 2.4334 1.2957 -4.8254 14 6 2.9315 2.0415 -5.9415 15 6 2.6868 1.2207 -7.2151 16 8 3.3866 -0.0244 -7.0815 17 6 2.0401 -0.7212 1.2493 18 6 1.5899 -0.0845 2.5715 19 7 2.9390 -0.3444 3.0960 20 6 3.4927 -0.5600 4.3298 21 1 2.8558 -0.6814 5.1935 22 6 4.8722 -0.6227 4.4701 23 7 5.4081 -0.7189 5.6684 24 14 5.9681 -0.5704 2.9583 25 1 7.3914 -0.5289 3.3799 26 1 5.7314 -1.7821 2.1331 27 1 5.6528 0.6416 2.1600 28 6 3.4330 -0.2640 1.7131 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 2.2491 -1.6318 -1.1525 33 1 2.8690 -2.6115 -2.5737 34 1 3.6846 -3.7642 -4.5822 35 1 3.9223 -2.5428 -6.7029 36 1 2.4059 2.9938 -6.0113 37 1 3.9999 2.2187 -5.8180 38 1 1.6188 1.0392 -7.3357 39 1 3.0675 1.7629 -8.0806 40 1 1.9119 -1.8028 1.2077 41 1 0.8095 -0.6492 3.0816 42 1 1.3545 0.9763 2.4855 43 1 4.8450 -0.6714 6.4568 44 1 3.6837 0.7494 1.3999 45 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969794084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:34 Heat of formation + Delta-G solvation = -12.376810 kcal Electronic energy + Delta-G solvation = -28601.152906 eV Core-core repulsion = 24586.899863 eV Total energy + Delta-G solvation = -4014.253043 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.63521 -39.91053 -38.63877 -37.73877 -37.32429 -34.94833 -32.51181 -31.75657 -31.46615 -30.03466 -28.75665 -27.72246 -25.54692 -25.05764 -24.49959 -23.47331 -21.39494 -21.22487 -20.39075 -19.60489 -18.92816 -17.78335 -17.63424 -17.41734 -16.61498 -16.09674 -15.79851 -15.41175 -15.26676 -15.01570 -14.82496 -14.50794 -14.28895 -14.17031 -13.86093 -13.66866 -13.36888 -13.14514 -12.88673 -12.51779 -12.25858 -12.22300 -11.87278 -11.79549 -11.53706 -11.44943 -11.42340 -10.99422 -10.88735 -10.63100 -10.32934 -10.23967 -9.71520 -9.23224 -9.11579 -9.03510 -8.88592 -8.80104 -8.41404 -7.14553 -6.27920 -3.21761 0.54290 0.97199 2.61723 2.84512 2.89626 3.14777 3.41546 3.47352 3.61705 3.66462 3.85425 4.26262 4.44019 4.49875 4.61224 4.62368 4.68030 4.76109 4.80107 4.92056 4.99320 5.09996 5.12877 5.14366 5.34964 5.46903 5.50929 5.62246 5.67220 5.71472 5.77670 5.91285 6.02207 6.04971 6.20505 6.21418 6.26416 6.30124 6.33949 6.42790 6.54383 6.65962 6.93666 7.05982 7.14254 7.59519 8.25074 8.32075 8.99203 9.51673 10.38694 11.22056 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017106 B = 0.002905 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.454254 B = 9635.255309 C =10151.757051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 H 0.090 0.910 4 N -0.718 5.718 5 C 0.558 3.442 6 O -0.519 6.519 7 C -0.132 4.132 8 C -0.081 4.081 9 C -0.125 4.125 10 C -0.090 4.090 11 C 0.035 3.965 12 C 0.109 3.891 13 O -0.269 6.269 14 C 0.014 3.986 15 C 0.019 3.981 16 O -0.307 6.307 17 C -0.139 4.139 18 C 0.134 3.866 19 N -0.630 5.630 20 C -0.303 4.303 21 H 0.083 0.917 22 C -0.026 4.026 23 N -0.935 5.935 24 Si 1.070 2.930 25 H -0.295 1.295 26 H -0.293 1.293 27 H -0.287 1.287 28 C 0.103 3.897 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.397 0.603 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.124 0.876 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.123 0.877 40 H 0.098 0.902 41 H 0.047 0.953 42 H 0.039 0.961 43 H 0.260 0.740 44 H 0.045 0.955 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.760 -1.282 -28.744 29.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.108 0.892 4 N -0.370 5.370 5 C 0.345 3.655 6 O -0.395 6.395 7 C -0.136 4.136 8 C -0.100 4.100 9 C -0.143 4.143 10 C -0.109 4.109 11 C -0.009 4.009 12 C 0.061 3.939 13 O -0.181 6.181 14 C -0.062 4.062 15 C -0.056 4.056 16 O -0.221 6.221 17 C -0.159 4.159 18 C 0.007 3.993 19 N -0.357 5.357 20 C -0.429 4.429 21 H 0.100 0.900 22 C -0.224 4.224 23 N -0.577 5.577 24 Si 0.903 3.097 25 H -0.223 1.223 26 H -0.221 1.221 27 H -0.214 1.214 28 C -0.023 4.023 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.233 0.767 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.142 0.858 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.140 0.860 40 H 0.116 0.884 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.296 -0.474 -29.013 29.692 hybrid contribution -1.465 -0.115 0.406 1.525 sum -7.761 -0.589 -28.607 29.647 Atomic orbital electron populations 1.22118 0.95210 1.01958 1.02324 1.21008 0.93897 0.97484 0.82712 0.89173 1.46016 1.67450 1.14007 1.09543 1.17898 0.78252 0.86622 0.82737 1.90813 1.49104 1.14968 1.84638 1.19429 1.07793 0.94466 0.91933 1.21189 0.97182 0.92282 0.99361 1.20845 1.01239 1.00553 0.91639 1.20609 1.00625 0.90276 0.99385 1.18794 1.04841 0.92747 0.84567 1.18903 0.98357 0.84516 0.92144 1.86622 1.69528 1.17252 1.44737 1.23740 1.01483 0.95776 0.85160 1.23719 0.98185 0.84121 0.99608 1.86393 1.68344 1.35265 1.32129 1.23558 0.99022 1.00258 0.93108 1.22254 0.90024 0.97158 0.89818 1.45980 1.04104 1.83732 1.01933 1.20159 0.92136 1.47519 0.83084 0.89950 1.25716 0.94245 0.99313 1.03151 1.70913 1.37290 1.52335 0.97184 0.83714 0.75706 0.76234 0.74059 1.22255 1.22137 1.21413 1.22834 0.94778 0.98519 0.86135 0.91283 0.92509 0.92577 0.76748 0.84462 0.84302 0.84427 0.85796 0.90278 0.90268 0.85952 0.88404 0.93518 0.94300 0.92958 0.93739 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.29 37.16 0.35 -1.66 16 2 C 0.15 2.23 2.47 -67.93 -0.17 2.07 16 3 H 0.09 1.51 7.32 -51.93 -0.38 1.13 16 4 N -0.72 -9.38 5.03 -54.85 -0.28 -9.65 16 5 C 0.56 8.29 7.73 -12.47 -0.10 8.19 16 6 O -0.52 -9.47 14.76 -16.87 -0.25 -9.72 16 7 C -0.13 -1.67 5.89 -104.84 -0.62 -2.29 16 8 C -0.08 -0.77 9.53 -39.19 -0.37 -1.14 16 9 C -0.12 -0.99 10.02 -39.67 -0.40 -1.39 16 10 C -0.09 -0.80 9.95 -39.36 -0.39 -1.19 16 11 C 0.04 0.39 6.49 -39.17 -0.25 0.13 16 12 C 0.11 1.39 6.51 -38.61 -0.25 1.14 16 13 O -0.27 -3.58 8.42 -47.39 -0.40 -3.98 16 14 C 0.01 0.12 7.25 37.40 0.27 0.39 16 15 C 0.02 0.13 7.28 37.40 0.27 0.40 16 16 O -0.31 -3.01 10.43 -33.01 -0.34 -3.35 16 17 C -0.14 -2.31 3.67 -89.96 -0.33 -2.64 16 18 C 0.13 2.60 7.33 -8.50 -0.06 2.54 16 19 N -0.63 -15.64 3.69 -184.57 -0.68 -16.32 16 20 C -0.30 -8.85 11.08 -15.06 -0.17 -9.02 16 21 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 22 C -0.03 -0.78 5.50 -17.43 -0.10 -0.87 16 23 N -0.93 -29.92 13.70 55.49 0.76 -29.16 16 24 Si 1.07 27.37 25.16 -169.99 -4.28 23.09 16 25 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 26 H -0.29 -6.99 6.51 56.52 0.37 -6.62 16 27 H -0.29 -6.99 6.21 56.52 0.35 -6.64 16 28 C 0.10 2.19 5.27 -8.36 -0.04 2.14 16 29 H 0.07 0.84 7.48 -51.93 -0.39 0.46 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.40 4.14 6.63 -40.82 -0.27 3.87 16 33 H 0.14 0.98 6.40 -52.49 -0.34 0.64 16 34 H 0.14 0.72 8.06 -52.48 -0.42 0.29 16 35 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 43 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 44 H 0.05 0.97 7.44 -51.93 -0.39 0.59 16 45 H 0.05 1.12 4.73 -51.93 -0.25 0.87 16 LS Contribution 362.41 15.07 5.46 5.46 Total: -1.00 -37.37 362.41 -8.68 -46.05 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.32 Total: 0.78 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.36 Total: -3.19 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.20 Total: -55.14 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.99 Total: -17.05 kcal Atomic # 14 Polarization: 27.37 SS G_CDS: -4.28 Total: 23.09 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.37 -8.68 -46.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969794084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.675 kcal (2) G-P(sol) polarization free energy of solvation -37.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds