Wall clock time and date at job start Tue Mar 31 2020 18:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21592 * 119.99904 * 0.02562 * 5 4 2 7 7 C 1.47539 * 119.99870 * 180.02562 * 5 4 2 8 8 C 1.39769 * 120.14489 * 0.02562 * 7 5 4 9 9 C 1.37747 * 119.95198 * 179.97438 * 8 7 5 10 10 C 1.38491 * 120.33456 * 0.04918 * 9 8 7 11 11 C 1.38593 * 120.40634 * 0.03875 * 10 9 8 12 12 C 1.38992 * 119.90473 * 359.57442 * 11 10 9 13 13 O 1.35813 * 120.87203 * 180.62060 * 12 11 10 14 14 C 1.43183 * 116.71357 * 342.78341 * 13 12 11 15 15 C 1.53477 * 108.22727 * 46.29781 * 14 13 12 16 16 O 1.36139 * 119.37342 * 179.61946 * 11 10 9 17 17 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 18 18 C 1.53504 * 114.20785 * 300.00220 * 17 2 1 19 19 N 1.47069 * 87.98363 * 220.34571 * 18 17 2 20 20 C 1.36941 * 136.05552 * 207.07801 * 19 18 17 21 21 H 1.08000 * 119.99396 * 7.56018 * 20 19 18 22 22 C 1.38806 * 119.99993 * 187.55101 * 20 19 18 23 23 N 1.31621 * 119.99759 * 174.37714 * 22 20 19 24 24 Si 1.86799 * 119.99972 * 354.38427 * 22 20 19 25 25 H 1.48501 * 109.46963 * 174.94900 * 24 22 20 26 26 H 1.48498 * 109.47184 * 294.94894 * 24 22 20 27 27 H 1.48507 * 109.47082 * 54.95224 * 24 22 20 28 28 C 1.47064 * 87.88742 * 27.34488 * 19 18 17 29 29 H 1.08998 * 109.47419 * 299.99803 * 1 2 3 30 30 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 31 31 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 32 32 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 33 33 H 1.07998 * 120.02167 * 359.96050 * 8 7 5 34 34 H 1.08003 * 119.83230 * 180.02562 * 9 8 7 35 35 H 1.07996 * 119.79216 * 180.02562 * 10 9 8 36 36 H 1.08999 * 109.70965 * 165.97549 * 14 13 12 37 37 H 1.09000 * 109.71249 * 286.61266 * 14 13 12 38 38 H 1.08997 * 109.70337 * 60.02408 * 15 14 13 39 39 H 1.08996 * 109.70373 * 180.60048 * 15 14 13 40 40 H 1.09002 * 113.41395 * 73.19962 * 17 2 1 41 41 H 1.08997 * 113.46758 * 105.56146 * 18 17 2 42 42 H 1.09000 * 113.51898 * 335.13170 * 18 17 2 43 43 H 0.96993 * 120.00423 * 354.88754 * 23 22 20 44 44 H 1.08993 * 113.47012 * 87.43421 * 28 19 18 45 45 H 1.09000 * 113.46758 * 217.87997 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1615 -2.4116 7 6 2.6384 -0.7140 -3.5618 8 6 2.9708 -2.0703 -3.5027 9 6 3.4287 -2.7160 -4.6300 10 6 3.5630 -2.0278 -5.8243 11 6 3.2392 -0.6822 -5.8988 12 6 2.7684 -0.0194 -4.7715 13 8 2.4334 1.2957 -4.8254 14 6 2.9315 2.0415 -5.9415 15 6 2.6868 1.2207 -7.2151 16 8 3.3866 -0.0244 -7.0815 17 6 2.0401 -0.7212 1.2493 18 6 1.5899 -0.0845 2.5715 19 7 2.9390 -0.3444 3.0960 20 6 3.4927 -0.5600 4.3298 21 1 2.8558 -0.6814 5.1935 22 6 4.8722 -0.6227 4.4701 23 7 5.4081 -0.7189 5.6684 24 14 5.9681 -0.5704 2.9583 25 1 7.3914 -0.5289 3.3799 26 1 5.7314 -1.7821 2.1331 27 1 5.6528 0.6416 2.1600 28 6 3.4330 -0.2640 1.7131 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 2.2491 -1.6318 -1.1525 33 1 2.8690 -2.6115 -2.5737 34 1 3.6846 -3.7642 -4.5822 35 1 3.9223 -2.5428 -6.7029 36 1 2.4059 2.9938 -6.0113 37 1 3.9999 2.2187 -5.8180 38 1 1.6188 1.0392 -7.3357 39 1 3.0675 1.7629 -8.0806 40 1 1.9119 -1.8028 1.2077 41 1 0.8095 -0.6492 3.0816 42 1 1.3545 0.9763 2.4855 43 1 4.8450 -0.6714 6.4568 44 1 3.6837 0.7494 1.3999 45 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969794084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:33 Heat of formation + Delta-G solvation = -39.009421 kcal Electronic energy + Delta-G solvation = -28602.307783 eV Core-core repulsion = 24586.899863 eV Total energy + Delta-G solvation = -4015.407920 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.36922 -41.11004 -40.02484 -38.50305 -38.12026 -36.26574 -34.54618 -32.83475 -32.13219 -31.11113 -29.49869 -29.42098 -27.09689 -25.93296 -25.49674 -24.83871 -22.74706 -22.04120 -21.45462 -21.05270 -19.83483 -19.55033 -18.57464 -18.40660 -17.54279 -17.34914 -16.93784 -16.53346 -16.14605 -15.96032 -15.83163 -15.65388 -15.47634 -15.21624 -15.15222 -14.89402 -14.76207 -14.38233 -13.96725 -13.65895 -13.30498 -13.22044 -13.14716 -13.09377 -12.88176 -12.51062 -12.35985 -12.18765 -12.11844 -12.04522 -11.71809 -11.68628 -11.30694 -11.10298 -10.86923 -10.77712 -10.11208 -9.68614 -9.23862 -9.14474 -8.62414 -5.48682 -0.24774 0.26735 1.36130 1.46778 1.65268 1.83844 2.02910 2.12891 2.27165 2.52041 2.78105 2.97552 3.17339 3.21844 3.45036 3.60423 3.83302 3.84691 3.90501 3.95184 4.14648 4.20898 4.24321 4.33558 4.39793 4.45098 4.53608 4.56756 4.58265 4.66059 4.66895 4.69075 4.80749 4.87480 4.99117 5.04729 5.08350 5.19150 5.29901 5.34770 5.41321 5.56211 5.62016 5.87230 5.94216 6.33580 6.59884 6.69036 7.27598 7.31617 8.26770 8.89184 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017106 B = 0.002905 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.454254 B = 9635.255309 C =10151.757051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.162 3.838 3 H 0.066 0.934 4 N -0.708 5.708 5 C 0.556 3.444 6 O -0.563 6.563 7 C -0.160 4.160 8 C -0.077 4.077 9 C -0.115 4.115 10 C -0.086 4.086 11 C 0.022 3.978 12 C 0.084 3.916 13 O -0.304 6.304 14 C 0.005 3.995 15 C 0.020 3.980 16 O -0.317 6.317 17 C -0.101 4.101 18 C 0.130 3.870 19 N -0.662 5.662 20 C -0.289 4.289 21 H 0.053 0.947 22 C -0.086 4.086 23 N -0.971 5.971 24 Si 1.107 2.893 25 H -0.305 1.305 26 H -0.262 1.262 27 H -0.273 1.273 28 C 0.092 3.908 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.413 0.587 33 H 0.162 0.838 34 H 0.176 0.824 35 H 0.162 0.838 36 H 0.143 0.857 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.157 0.843 40 H 0.122 0.878 41 H 0.059 0.941 42 H 0.047 0.953 43 H 0.247 0.753 44 H 0.039 0.961 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.230 -3.161 -31.988 33.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.057 3.943 3 H 0.084 0.916 4 N -0.361 5.361 5 C 0.345 3.655 6 O -0.443 6.443 7 C -0.164 4.164 8 C -0.096 4.096 9 C -0.133 4.133 10 C -0.105 4.105 11 C -0.023 4.023 12 C 0.036 3.964 13 O -0.217 6.217 14 C -0.069 4.069 15 C -0.054 4.054 16 O -0.232 6.232 17 C -0.121 4.121 18 C 0.005 3.995 19 N -0.390 5.390 20 C -0.417 4.417 21 H 0.071 0.929 22 C -0.278 4.278 23 N -0.617 5.617 24 Si 0.934 3.066 25 H -0.233 1.233 26 H -0.188 1.188 27 H -0.199 1.199 28 C -0.032 4.032 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.251 0.749 33 H 0.179 0.821 34 H 0.193 0.807 35 H 0.179 0.821 36 H 0.161 0.839 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.174 0.826 40 H 0.140 0.860 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.819 -2.384 -32.296 33.094 hybrid contribution -1.418 0.507 1.381 2.043 sum -8.236 -1.877 -30.915 32.048 Atomic orbital electron populations 1.22047 0.93380 1.03281 1.02153 1.20767 0.95150 0.96021 0.82397 0.91611 1.45852 1.67008 1.14612 1.08595 1.18290 0.77453 0.86207 0.83573 1.90782 1.51171 1.16948 1.85381 1.19454 1.09964 0.95899 0.91065 1.21510 0.96125 0.90971 1.01001 1.21280 0.99478 1.02028 0.90531 1.21050 0.99202 0.89551 1.00704 1.19044 1.05177 0.93637 0.84433 1.19212 0.99452 0.84639 0.93066 1.86555 1.70306 1.18035 1.46840 1.24013 1.01548 0.96487 0.84899 1.23942 0.98477 0.83126 0.99889 1.86366 1.68867 1.36255 1.31680 1.23259 0.94940 1.01402 0.92502 1.22479 0.88016 0.98091 0.90941 1.46126 1.06995 1.84126 1.01789 1.20054 0.91965 1.45278 0.84409 0.92898 1.27009 0.96227 0.99760 1.04768 1.71009 1.37402 1.55610 0.97652 0.83273 0.73504 0.78073 0.71769 1.23267 1.18785 1.19923 1.23020 0.97460 0.98421 0.84313 0.90835 0.93363 0.90468 0.74939 0.82089 0.80682 0.82080 0.83904 0.90552 0.90005 0.82567 0.85988 0.92284 0.93489 0.94430 0.94316 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.29 71.98 0.67 -2.77 16 2 C 0.16 4.36 2.47 44.99 0.11 4.48 16 3 H 0.07 2.15 7.32 -2.39 -0.02 2.13 16 4 N -0.71 -16.87 5.03 -445.69 -2.24 -19.11 16 5 C 0.56 16.10 7.73 86.70 0.67 16.77 16 6 O -0.56 -20.91 14.76 17.18 0.25 -20.66 16 7 C -0.16 -3.86 5.89 -20.00 -0.12 -3.98 16 8 C -0.08 -1.22 9.53 22.52 0.21 -1.01 16 9 C -0.12 -1.39 10.02 22.21 0.22 -1.16 16 10 C -0.09 -1.27 9.95 22.41 0.22 -1.04 16 11 C 0.02 0.45 6.49 22.54 0.15 0.60 16 12 C 0.08 2.11 6.51 22.90 0.15 2.26 16 13 O -0.30 -8.27 8.42 -64.45 -0.54 -8.81 16 14 C 0.01 0.09 7.25 72.14 0.52 0.61 16 15 C 0.02 0.25 7.28 72.14 0.52 0.77 16 16 O -0.32 -5.75 10.43 -82.87 -0.86 -6.62 16 17 C -0.10 -3.06 3.67 -10.37 -0.04 -3.10 16 18 C 0.13 4.79 7.33 83.18 0.61 5.40 16 19 N -0.66 -32.20 3.69 -737.86 -2.72 -34.92 16 20 C -0.29 -17.12 11.08 84.03 0.93 -16.19 16 21 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 22 C -0.09 -5.25 5.50 84.86 0.47 -4.78 16 23 N -0.97 -63.91 13.70 21.65 0.30 -63.61 16 24 Si 1.11 54.86 25.16 68.60 1.73 56.58 16 25 H -0.30 -15.44 7.11 99.48 0.71 -14.74 16 26 H -0.26 -11.51 6.51 99.48 0.65 -10.86 16 27 H -0.27 -12.75 6.21 99.48 0.62 -12.13 16 28 C 0.09 3.75 5.27 83.27 0.44 4.19 16 29 H 0.07 1.62 7.48 -2.39 -0.02 1.60 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.41 7.12 6.63 -92.71 -0.61 6.50 16 33 H 0.16 1.61 6.40 -2.91 -0.02 1.59 16 34 H 0.18 0.83 8.06 -2.91 -0.02 0.80 16 35 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.16 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 43 H 0.25 16.25 8.73 -92.71 -0.81 15.44 16 44 H 0.04 1.64 7.44 -2.39 -0.02 1.62 16 45 H 0.05 2.09 4.73 -2.39 -0.01 2.08 16 Total: -1.00 -85.12 362.41 1.87 -83.25 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.22 Total: 12.85 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 5.74 Total: 1.05 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -4.67 Total: -117.65 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -1.15 Total: -36.09 kcal Atomic # 14 Polarization: 54.86 SS G_CDS: 1.73 Total: 56.58 kcal Total: -85.12 1.87 -83.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969794084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.238 kcal (2) G-P(sol) polarization free energy of solvation -85.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds