Wall clock time and date at job start Tue Mar 31 2020 18:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47406 * 2 1 4 4 N 1.46496 * 109.47228 * 120.00734 * 2 1 3 5 5 C 1.34785 * 119.99796 * 274.99641 * 4 2 1 6 6 O 1.21279 * 119.99953 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99552 * 179.97438 * 5 4 2 8 8 H 1.09002 * 109.70425 * 54.42623 * 7 5 4 9 9 C 1.53456 * 109.71092 * 293.79757 * 7 5 4 10 10 O 1.43192 * 108.22891 * 180.57205 * 9 7 5 11 11 C 1.36105 * 116.69491 * 46.26647 * 10 9 7 12 12 C 1.38705 * 119.39476 * 162.87592 * 11 10 9 13 13 C 1.38198 * 120.06882 * 179.69982 * 12 11 10 14 14 C 1.38257 * 120.10734 * 359.97438 * 13 12 11 15 15 C 1.38193 * 120.11742 * 0.06358 * 14 13 12 16 16 C 1.38702 * 120.06479 * 359.97438 * 15 14 13 17 17 O 1.36110 * 119.39584 * 179.86078 * 16 15 14 18 18 C 1.53007 * 109.47140 * 240.00538 * 2 1 3 19 19 C 1.53947 * 113.73728 * 326.26076 * 18 2 1 20 20 N 1.47812 * 86.03890 * 90.88293 * 19 18 2 21 21 C 1.36938 * 134.45832 * 204.64660 * 20 19 18 22 22 H 1.07999 * 119.99843 * 172.86176 * 21 20 19 23 23 C 1.38809 * 119.99637 * 352.86304 * 21 20 19 24 24 N 1.31614 * 120.00553 * 353.41579 * 23 21 20 25 25 Si 1.86809 * 119.99822 * 173.41880 * 23 21 20 26 26 H 1.48500 * 109.46973 * 93.35368 * 25 23 21 27 27 H 1.48500 * 109.47017 * 213.35420 * 25 23 21 28 28 H 1.48499 * 109.46841 * 333.35305 * 25 23 21 29 29 C 1.47578 * 91.04760 * 24.54454 * 20 19 18 30 30 H 1.08990 * 109.47479 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46882 * 299.99592 * 1 2 3 32 32 H 1.08997 * 109.46884 * 59.99196 * 1 2 3 33 33 H 0.97001 * 120.00567 * 94.99666 * 4 2 1 34 34 H 1.09006 * 109.71358 * 300.26875 * 9 7 5 35 35 H 1.09003 * 109.71415 * 60.89954 * 9 7 5 36 36 H 1.08006 * 119.96286 * 359.71642 * 12 11 10 37 37 H 1.07990 * 119.94573 * 179.97438 * 13 12 11 38 38 H 1.07995 * 119.93705 * 180.02562 * 14 13 12 39 39 H 1.08002 * 119.96374 * 180.02562 * 15 14 13 40 40 H 1.08992 * 112.94512 * 194.67134 * 18 2 1 41 41 H 1.09001 * 113.76797 * 205.14537 * 19 18 2 42 42 H 1.09003 * 113.77255 * 336.53924 * 19 18 2 43 43 H 0.97002 * 120.00581 * 179.97438 * 24 23 21 44 44 H 1.09003 * 113.77039 * 221.14697 * 29 20 19 45 45 H 1.09011 * 113.86986 * 89.77270 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3571 6 8 1.8583 1.1582 2.4118 7 6 2.6490 -0.7292 3.5876 8 1 3.6043 -1.2076 3.3717 9 6 1.6274 -1.7864 4.0274 10 8 2.1284 -2.4315 5.2035 11 6 2.6244 -1.6233 6.1799 12 6 2.7902 -2.1270 7.4616 13 6 3.2985 -1.3204 8.4621 14 6 3.6435 -0.0099 8.1883 15 6 3.4801 0.4984 6.9137 16 6 2.9697 -0.3055 5.9052 17 8 2.8117 0.2100 4.6554 18 6 2.0400 -0.7212 -1.2494 19 6 1.1417 -1.8864 -1.7024 20 7 0.4434 -0.8878 -2.5390 21 6 -0.8147 -0.7942 -3.0716 22 1 -1.1250 0.1136 -3.5676 23 6 -1.6912 -1.8662 -2.9739 24 7 -1.2738 -3.0154 -2.4867 25 14 -3.4633 -1.6777 -3.5340 26 1 -3.5855 -2.1189 -4.9467 27 1 -4.3446 -2.5111 -2.6772 28 1 -3.8686 -0.2534 -3.4234 29 6 1.6449 -0.0315 -2.5677 30 1 -0.3634 -1.0275 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.2490 -1.6319 1.1525 34 1 0.6739 -1.3067 4.2488 35 1 1.4941 -2.5215 3.2336 36 1 2.5221 -3.1506 7.6778 37 1 3.4264 -1.7145 9.4593 38 1 4.0408 0.6178 8.9722 39 1 3.7507 1.5224 6.7025 40 1 3.0971 -0.9798 -1.1889 41 1 1.6679 -2.6494 -2.2761 42 1 0.5253 -2.3017 -0.9051 43 1 -1.8863 -3.7644 -2.4181 44 1 1.4295 1.0316 -2.4601 45 1 2.3204 -0.2468 -3.3958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970834390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:39 Heat of formation + Delta-G solvation = -12.775441 kcal Electronic energy + Delta-G solvation = -28590.664954 eV Core-core repulsion = 24576.394624 eV Total energy + Delta-G solvation = -4014.270329 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.66838 -39.87431 -38.51151 -37.75680 -37.35556 -34.59706 -32.39309 -31.80998 -30.91459 -29.77628 -28.51058 -27.66665 -25.57292 -24.98783 -24.16602 -23.10420 -22.16877 -21.22442 -20.25610 -19.13430 -18.70770 -17.92112 -17.40490 -16.82084 -16.49007 -15.84608 -15.74106 -15.38162 -14.98792 -14.95826 -14.74101 -14.48474 -14.20470 -14.11687 -13.92402 -13.79902 -13.43936 -12.67224 -12.52794 -12.33542 -12.19429 -11.82634 -11.63729 -11.40788 -11.28914 -11.18728 -11.06059 -10.83156 -10.82016 -10.65974 -10.45702 -9.94195 -9.76371 -9.69737 -9.42939 -8.93604 -8.88335 -8.76007 -8.34193 -6.87908 -5.82965 -3.12849 1.02123 1.03341 2.34819 2.45619 2.80860 3.35992 3.40411 3.42693 3.43504 3.49624 3.90516 4.31746 4.42346 4.45858 4.49658 4.71264 4.81263 4.98452 5.09508 5.12687 5.14459 5.19938 5.22297 5.31278 5.48207 5.55976 5.81020 5.86135 5.90759 5.96880 6.18549 6.19258 6.24599 6.34219 6.41011 6.57548 6.58145 6.60813 6.63603 6.86522 7.09815 7.13220 7.20042 7.33488 7.48839 7.54244 7.92931 8.16633 9.00335 9.66855 10.56306 11.35115 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021780 B = 0.002525 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.284172 B =11084.368496 C =11634.325581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.174 3.826 3 H 0.080 0.920 4 N -0.711 5.711 5 C 0.523 3.477 6 O -0.513 6.513 7 C 0.034 3.966 8 H 0.110 0.890 9 C 0.034 3.966 10 O -0.301 6.301 11 C 0.046 3.954 12 C -0.113 4.113 13 C -0.119 4.119 14 C -0.116 4.116 15 C -0.112 4.112 16 C 0.054 3.946 17 O -0.279 6.279 18 C -0.156 4.156 19 C 0.171 3.829 20 N -0.605 5.605 21 C -0.220 4.220 22 H 0.079 0.921 23 C -0.005 4.005 24 N -0.920 5.920 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.126 3.874 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.089 0.911 33 H 0.400 0.600 34 H 0.087 0.913 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.067 0.933 41 H 0.030 0.970 42 H 0.066 0.934 43 H 0.253 0.747 44 H 0.046 0.954 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.721 1.258 18.909 22.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.071 3.929 3 H 0.098 0.902 4 N -0.364 5.364 5 C 0.305 3.695 6 O -0.388 6.388 7 C -0.026 4.026 8 H 0.127 0.873 9 C -0.042 4.042 10 O -0.215 6.215 11 C 0.001 3.999 12 C -0.131 4.131 13 C -0.137 4.137 14 C -0.134 4.134 15 C -0.131 4.131 16 C 0.009 3.991 17 O -0.192 6.192 18 C -0.176 4.176 19 C 0.046 3.954 20 N -0.332 5.332 21 C -0.348 4.348 22 H 0.096 0.904 23 C -0.201 4.201 24 N -0.567 5.567 25 Si 0.736 3.264 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.206 1.206 29 C 0.000 4.000 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.108 0.892 33 H 0.234 0.766 34 H 0.105 0.895 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.149 2.022 18.787 21.940 hybrid contribution -0.846 -0.644 -0.739 1.295 sum 10.303 1.378 18.048 20.827 Atomic orbital electron populations 1.22161 0.93112 1.03827 1.01593 1.20723 0.95580 0.95509 0.81066 0.90161 1.46092 1.66701 1.14123 1.09457 1.19510 0.78998 0.87420 0.83535 1.90755 1.48360 1.15371 1.84289 1.22969 1.01275 0.90762 0.87624 0.87265 1.23610 0.96177 0.96699 0.87748 1.86352 1.76054 1.33033 1.26031 1.18984 1.00723 0.90030 0.90137 1.20463 1.02312 1.01192 0.89177 1.20925 1.00025 0.93850 0.98911 1.20927 1.00918 0.95770 0.95802 1.20479 1.00654 1.00435 0.91504 1.19036 1.01598 0.92618 0.85857 1.86404 1.88060 1.32379 1.12368 1.23521 0.98582 1.00950 0.94550 1.22261 0.89822 0.90211 0.93126 1.46167 1.06734 1.20670 1.59612 1.18971 0.86346 0.98509 1.30939 0.90372 1.24749 0.98422 0.95261 1.01701 1.69811 1.34237 1.01542 1.51105 0.86207 0.84804 0.77377 0.78002 1.21720 1.21667 1.20558 1.22528 0.89184 0.95575 0.92744 0.91109 0.94942 0.89250 0.76577 0.89520 0.84986 0.84722 0.85065 0.85024 0.84620 0.91434 0.95203 0.91567 0.93718 0.93623 0.94626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.21 37.16 0.30 -2.53 16 2 C 0.17 2.82 2.69 -67.93 -0.18 2.64 16 3 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 4 N -0.71 -9.47 5.06 -53.80 -0.27 -9.74 16 5 C 0.52 7.58 7.15 -10.98 -0.08 7.50 16 6 O -0.51 -9.66 16.19 -14.13 -0.23 -9.89 16 7 C 0.03 0.41 3.43 -27.65 -0.09 0.32 16 8 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 9 C 0.03 0.36 6.53 37.39 0.24 0.61 16 10 O -0.30 -3.54 10.42 -32.86 -0.34 -3.89 16 11 C 0.05 0.55 6.49 -39.14 -0.25 0.29 16 12 C -0.11 -1.08 9.96 -39.42 -0.39 -1.47 16 13 C -0.12 -0.94 10.04 -39.59 -0.40 -1.34 16 14 C -0.12 -0.95 10.04 -39.59 -0.40 -1.35 16 15 C -0.11 -1.17 9.96 -39.43 -0.39 -1.56 16 16 C 0.05 0.68 6.49 -39.14 -0.25 0.43 16 17 O -0.28 -3.97 9.62 -47.05 -0.45 -4.42 16 18 C -0.16 -2.59 4.07 -89.69 -0.36 -2.96 16 19 C 0.17 3.58 6.32 -2.84 -0.02 3.56 16 20 N -0.60 -14.17 2.17 -177.68 -0.39 -14.55 16 21 C -0.22 -5.79 9.80 -15.06 -0.15 -5.94 16 22 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 23 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 24 N -0.92 -25.84 11.74 55.49 0.65 -25.19 16 25 Si 0.91 21.56 29.56 -169.99 -5.02 16.53 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 C 0.13 2.39 8.13 -2.97 -0.02 2.37 16 30 H 0.07 1.49 6.18 -51.93 -0.32 1.17 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.91 6.15 -51.93 -0.32 1.59 16 33 H 0.40 4.25 8.55 -40.82 -0.35 3.90 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.13 1.10 8.09 -51.93 -0.42 0.68 16 36 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 1.48 6.00 -51.93 -0.31 1.17 16 43 H 0.25 6.97 8.31 -40.82 -0.34 6.64 16 44 H 0.05 0.83 8.10 -51.93 -0.42 0.41 16 45 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 368.76 15.07 5.56 5.56 Total: -1.00 -32.57 368.76 -9.35 -41.92 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.31 Total: 3.33 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -2.55 Total: 0.34 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.01 Total: -49.48 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -1.02 Total: -18.19 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.57 -9.35 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970834390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.146 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds