Wall clock time and date at job start Tue Mar 31 2020 18:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47406 * 2 1 4 4 N 1.46496 * 109.47228 * 120.00734 * 2 1 3 5 5 C 1.34785 * 119.99796 * 274.99641 * 4 2 1 6 6 O 1.21279 * 119.99953 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99552 * 179.97438 * 5 4 2 8 8 H 1.09002 * 109.70425 * 54.42623 * 7 5 4 9 9 C 1.53456 * 109.71092 * 293.79757 * 7 5 4 10 10 O 1.43192 * 108.22891 * 180.57205 * 9 7 5 11 11 C 1.36105 * 116.69491 * 46.26647 * 10 9 7 12 12 C 1.38705 * 119.39476 * 162.87592 * 11 10 9 13 13 C 1.38198 * 120.06882 * 179.69982 * 12 11 10 14 14 C 1.38257 * 120.10734 * 359.97438 * 13 12 11 15 15 C 1.38193 * 120.11742 * 0.06358 * 14 13 12 16 16 C 1.38702 * 120.06479 * 359.97438 * 15 14 13 17 17 O 1.36110 * 119.39584 * 179.86078 * 16 15 14 18 18 C 1.53007 * 109.47140 * 240.00538 * 2 1 3 19 19 C 1.53947 * 113.73728 * 326.26076 * 18 2 1 20 20 N 1.47812 * 86.03890 * 90.88293 * 19 18 2 21 21 C 1.36938 * 134.45832 * 204.64660 * 20 19 18 22 22 H 1.07999 * 119.99843 * 172.86176 * 21 20 19 23 23 C 1.38809 * 119.99637 * 352.86304 * 21 20 19 24 24 N 1.31614 * 120.00553 * 353.41579 * 23 21 20 25 25 Si 1.86809 * 119.99822 * 173.41880 * 23 21 20 26 26 H 1.48500 * 109.46973 * 93.35368 * 25 23 21 27 27 H 1.48500 * 109.47017 * 213.35420 * 25 23 21 28 28 H 1.48499 * 109.46841 * 333.35305 * 25 23 21 29 29 C 1.47578 * 91.04760 * 24.54454 * 20 19 18 30 30 H 1.08990 * 109.47479 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46882 * 299.99592 * 1 2 3 32 32 H 1.08997 * 109.46884 * 59.99196 * 1 2 3 33 33 H 0.97001 * 120.00567 * 94.99666 * 4 2 1 34 34 H 1.09006 * 109.71358 * 300.26875 * 9 7 5 35 35 H 1.09003 * 109.71415 * 60.89954 * 9 7 5 36 36 H 1.08006 * 119.96286 * 359.71642 * 12 11 10 37 37 H 1.07990 * 119.94573 * 179.97438 * 13 12 11 38 38 H 1.07995 * 119.93705 * 180.02562 * 14 13 12 39 39 H 1.08002 * 119.96374 * 180.02562 * 15 14 13 40 40 H 1.08992 * 112.94512 * 194.67134 * 18 2 1 41 41 H 1.09001 * 113.76797 * 205.14537 * 19 18 2 42 42 H 1.09003 * 113.77255 * 336.53924 * 19 18 2 43 43 H 0.97002 * 120.00581 * 179.97438 * 24 23 21 44 44 H 1.09003 * 113.77039 * 221.14697 * 29 20 19 45 45 H 1.09011 * 113.86986 * 89.77270 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3571 6 8 1.8583 1.1582 2.4118 7 6 2.6490 -0.7292 3.5876 8 1 3.6043 -1.2076 3.3717 9 6 1.6274 -1.7864 4.0274 10 8 2.1284 -2.4315 5.2035 11 6 2.6244 -1.6233 6.1799 12 6 2.7902 -2.1270 7.4616 13 6 3.2985 -1.3204 8.4621 14 6 3.6435 -0.0099 8.1883 15 6 3.4801 0.4984 6.9137 16 6 2.9697 -0.3055 5.9052 17 8 2.8117 0.2100 4.6554 18 6 2.0400 -0.7212 -1.2494 19 6 1.1417 -1.8864 -1.7024 20 7 0.4434 -0.8878 -2.5390 21 6 -0.8147 -0.7942 -3.0716 22 1 -1.1250 0.1136 -3.5676 23 6 -1.6912 -1.8662 -2.9739 24 7 -1.2738 -3.0154 -2.4867 25 14 -3.4633 -1.6777 -3.5340 26 1 -3.5855 -2.1189 -4.9467 27 1 -4.3446 -2.5111 -2.6772 28 1 -3.8686 -0.2534 -3.4234 29 6 1.6449 -0.0315 -2.5677 30 1 -0.3634 -1.0275 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.2490 -1.6319 1.1525 34 1 0.6739 -1.3067 4.2488 35 1 1.4941 -2.5215 3.2336 36 1 2.5221 -3.1506 7.6778 37 1 3.4264 -1.7145 9.4593 38 1 4.0408 0.6178 8.9722 39 1 3.7507 1.5224 6.7025 40 1 3.0971 -0.9798 -1.1889 41 1 1.6679 -2.6494 -2.2761 42 1 0.5253 -2.3017 -0.9051 43 1 -1.8863 -3.7644 -2.4181 44 1 1.4295 1.0316 -2.4601 45 1 2.3204 -0.2468 -3.3958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970834390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:37 Heat of formation + Delta-G solvation = -32.490249 kcal Electronic energy + Delta-G solvation = -28591.519852 eV Core-core repulsion = 24576.394624 eV Total energy + Delta-G solvation = -4015.125228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.55235 -41.14848 -39.90771 -38.55612 -38.30164 -35.99278 -34.18807 -32.95498 -31.64264 -31.02017 -29.57376 -29.36177 -26.63444 -26.50944 -25.79077 -23.90838 -23.49006 -22.37923 -21.37892 -20.31198 -19.79834 -18.91213 -18.69619 -18.33474 -17.43969 -17.10174 -16.87212 -16.67421 -16.45618 -15.96559 -15.80907 -15.64806 -15.46895 -15.28305 -14.99969 -14.86647 -14.49273 -14.37873 -13.95005 -13.49931 -13.15512 -13.04368 -12.93113 -12.85343 -12.80155 -12.57430 -12.42553 -12.37642 -12.21644 -12.11564 -11.69188 -11.65304 -11.39659 -11.17064 -10.95382 -10.71654 -10.19800 -9.66848 -9.13856 -8.78153 -7.87199 -5.15016 0.28968 0.29245 1.27986 1.38129 1.45286 1.46965 1.54343 1.98091 2.45361 2.50245 2.73293 3.02630 3.35017 3.38818 3.51689 3.54682 3.60742 3.74568 3.90007 4.02003 4.13047 4.25842 4.33102 4.35176 4.42979 4.51891 4.53868 4.67867 4.81758 4.84161 4.90173 5.02022 5.08312 5.08634 5.16301 5.21029 5.28681 5.43892 5.51254 5.56145 5.64008 5.69269 5.71787 5.79761 5.99499 6.29573 6.41161 6.99360 7.03666 7.67510 8.64126 9.30573 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021780 B = 0.002525 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.284172 B =11084.368496 C =11634.325581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.184 3.816 3 H 0.080 0.920 4 N -0.697 5.697 5 C 0.528 3.472 6 O -0.560 6.560 7 C 0.040 3.960 8 H 0.136 0.864 9 C 0.036 3.964 10 O -0.306 6.306 11 C 0.023 3.977 12 C -0.119 4.119 13 C -0.110 4.110 14 C -0.109 4.109 15 C -0.126 4.126 16 C 0.025 3.975 17 O -0.307 6.307 18 C -0.123 4.123 19 C 0.171 3.829 20 N -0.632 5.632 21 C -0.219 4.219 22 H 0.076 0.924 23 C -0.058 4.058 24 N -0.946 5.946 25 Si 0.960 3.040 26 H -0.291 1.291 27 H -0.297 1.297 28 H -0.274 1.274 29 C 0.122 3.878 30 H 0.048 0.952 31 H 0.028 0.972 32 H 0.064 0.936 33 H 0.417 0.583 34 H 0.072 0.928 35 H 0.157 0.843 36 H 0.150 0.850 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.138 0.862 40 H 0.107 0.893 41 H 0.019 0.981 42 H 0.047 0.953 43 H 0.246 0.754 44 H 0.053 0.947 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.417 1.112 20.641 24.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.080 3.920 3 H 0.098 0.902 4 N -0.350 5.350 5 C 0.312 3.688 6 O -0.437 6.437 7 C -0.020 4.020 8 H 0.153 0.847 9 C -0.040 4.040 10 O -0.221 6.221 11 C -0.022 4.022 12 C -0.138 4.138 13 C -0.128 4.128 14 C -0.127 4.127 15 C -0.145 4.145 16 C -0.019 4.019 17 O -0.222 6.222 18 C -0.142 4.142 19 C 0.046 3.954 20 N -0.359 5.359 21 C -0.348 4.348 22 H 0.093 0.907 23 C -0.252 4.252 24 N -0.596 5.596 25 Si 0.790 3.210 26 H -0.218 1.218 27 H -0.223 1.223 28 H -0.199 1.199 29 C -0.003 4.003 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.254 0.746 34 H 0.090 0.910 35 H 0.174 0.826 36 H 0.168 0.832 37 H 0.184 0.816 38 H 0.181 0.819 39 H 0.156 0.844 40 H 0.125 0.875 41 H 0.037 0.963 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.879 1.867 20.521 24.300 hybrid contribution -1.322 -0.532 -1.188 1.855 sum 11.558 1.335 19.333 22.564 Atomic orbital electron populations 1.21943 0.95362 1.01751 1.00117 1.20430 0.93541 0.95878 0.82144 0.90178 1.45840 1.65939 1.14793 1.08441 1.19908 0.77822 0.86823 0.84206 1.90734 1.50419 1.17521 1.85043 1.22966 1.02605 0.90263 0.86138 0.84708 1.23657 0.95091 0.96935 0.88299 1.86337 1.76265 1.33211 1.26254 1.19296 1.01787 0.90056 0.91015 1.20821 1.02064 1.02238 0.88659 1.21377 0.98045 0.93430 0.99946 1.21338 0.99576 0.96330 0.95442 1.20764 1.00904 1.00630 0.92196 1.19355 1.03460 0.93507 0.85590 1.86336 1.88700 1.33700 1.13426 1.23222 0.99817 0.97796 0.93370 1.22207 0.90094 0.90888 0.92256 1.46484 1.07248 1.22314 1.59830 1.19222 0.87999 0.98086 1.29462 0.90657 1.25364 1.01476 0.95377 1.02958 1.69943 1.34804 1.01918 1.52916 0.85341 0.81215 0.77305 0.77159 1.21824 1.22332 1.19859 1.22739 0.87578 0.95623 0.94351 0.93337 0.95339 0.91721 0.74625 0.90978 0.82562 0.83232 0.81637 0.81898 0.84375 0.87458 0.96300 0.93475 0.94492 0.92858 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 8.21 71.98 0.59 -4.56 16 2 C 0.18 5.77 2.69 44.99 0.12 5.89 16 3 H 0.08 2.63 7.58 -2.39 -0.02 2.61 16 4 N -0.70 -17.57 5.06 -442.52 -2.24 -19.81 16 5 C 0.53 14.98 7.15 87.65 0.63 15.61 16 6 O -0.56 -21.21 16.19 15.80 0.26 -20.96 16 7 C 0.04 0.94 3.43 30.00 0.10 1.05 16 8 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 9 C 0.04 0.76 6.53 72.14 0.47 1.23 16 10 O -0.31 -6.98 10.42 -82.52 -0.86 -7.84 16 11 C 0.02 0.53 6.49 22.56 0.15 0.67 16 12 C -0.12 -2.05 9.96 22.37 0.22 -1.83 16 13 C -0.11 -1.40 10.04 22.26 0.22 -1.17 16 14 C -0.11 -1.49 10.04 22.26 0.22 -1.27 16 15 C -0.13 -2.52 9.96 22.37 0.22 -2.30 16 16 C 0.03 0.63 6.49 22.56 0.15 0.78 16 17 O -0.31 -8.82 9.62 -69.03 -0.66 -9.48 16 18 C -0.12 -3.81 4.07 -10.13 -0.04 -3.85 16 19 C 0.17 7.06 6.32 86.44 0.55 7.61 16 20 N -0.63 -29.51 2.17 -716.05 -1.55 -31.07 16 21 C -0.22 -11.63 9.80 84.03 0.82 -10.81 16 22 H 0.08 3.93 7.84 -2.91 -0.02 3.91 16 23 C -0.06 -3.19 5.49 84.86 0.47 -2.72 16 24 N -0.95 -54.24 11.74 21.65 0.25 -53.99 16 25 Si 0.96 45.06 29.56 68.60 2.03 47.08 16 26 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 28 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 29 C 0.12 4.44 8.13 86.48 0.70 5.14 16 30 H 0.05 2.08 6.18 -2.39 -0.01 2.06 16 31 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 2.81 6.15 -2.39 -0.01 2.79 16 33 H 0.42 7.95 8.55 -92.71 -0.79 7.15 16 34 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.16 2.38 8.09 -2.39 -0.02 2.36 16 36 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.17 0.94 8.06 -2.92 -0.02 0.92 16 38 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.05 2.13 6.00 -2.39 -0.01 2.12 16 43 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 44 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 45 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -72.75 368.76 3.04 -69.71 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.22 Total: 16.89 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 5.60 Total: 9.47 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -3.54 Total: -104.87 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -1.27 Total: -38.29 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -72.75 3.04 -69.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970834390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.222 kcal (2) G-P(sol) polarization free energy of solvation -72.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds