Wall clock time and date at job start Tue Mar 31 2020 18:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47148 * 2 1 4 4 N 1.46501 * 109.47136 * 119.99930 * 2 1 3 5 5 C 1.34774 * 120.00022 * 274.99616 * 4 2 1 6 6 O 1.21590 * 119.99778 * 0.02562 * 5 4 2 7 7 C 1.47609 * 119.99983 * 179.97438 * 5 4 2 8 8 C 1.39691 * 120.10067 * 359.72902 * 7 5 4 9 9 C 1.37722 * 119.97103 * 179.76940 * 8 7 5 10 10 C 1.39011 * 120.26622 * 0.56567 * 9 8 7 11 11 C 1.39261 * 120.04506 * 359.62606 * 10 9 8 12 12 C 1.38288 * 119.95843 * 0.11750 * 11 10 9 13 13 O 1.36150 * 120.76149 * 180.26023 * 11 10 9 14 14 C 1.43174 * 116.70936 * 342.85767 * 13 11 10 15 15 C 1.53466 * 108.23350 * 46.14271 * 14 13 11 16 16 O 1.35967 * 119.23964 * 179.53287 * 10 9 8 17 17 C 1.53004 * 109.46862 * 239.99803 * 2 1 3 18 18 C 1.53499 * 114.20194 * 175.68147 * 17 2 1 19 19 N 1.47073 * 87.98271 * 220.34656 * 18 17 2 20 20 C 1.36942 * 136.05527 * 207.08568 * 19 18 17 21 21 H 1.07994 * 120.00082 * 7.51165 * 20 19 18 22 22 C 1.38805 * 119.99575 * 187.50622 * 20 19 18 23 23 N 1.31620 * 120.00031 * 174.40324 * 22 20 19 24 24 Si 1.86807 * 120.00388 * 354.40343 * 22 20 19 25 25 H 1.48500 * 109.46966 * 174.95506 * 24 22 20 26 26 H 1.48493 * 109.47091 * 294.95681 * 24 22 20 27 27 H 1.48504 * 109.46855 * 54.95714 * 24 22 20 28 28 C 1.47068 * 87.88382 * 27.34125 * 19 18 17 29 29 H 1.08998 * 109.47162 * 184.63897 * 1 2 3 30 30 H 1.09006 * 109.46666 * 304.63623 * 1 2 3 31 31 H 1.08999 * 109.46923 * 64.63286 * 1 2 3 32 32 H 0.97002 * 119.99853 * 95.00141 * 4 2 1 33 33 H 1.08004 * 120.01440 * 0.02562 * 8 7 5 34 34 H 1.08000 * 119.87326 * 180.30275 * 9 8 7 35 35 H 1.08001 * 120.01967 * 179.97438 * 12 11 10 36 36 H 1.09001 * 109.70854 * 165.82680 * 14 13 11 37 37 H 1.08997 * 109.70999 * 286.45580 * 14 13 11 38 38 H 1.08997 * 109.70951 * 59.87019 * 15 14 13 39 39 H 1.08991 * 109.70636 * 180.49486 * 15 14 13 40 40 H 1.08999 * 113.41397 * 308.87998 * 17 2 1 41 41 H 1.08997 * 113.46896 * 105.57052 * 18 17 2 42 42 H 1.09003 * 113.52350 * 335.12944 * 18 17 2 43 43 H 0.97005 * 119.99470 * 355.00821 * 23 22 20 44 44 H 1.09002 * 113.46505 * 87.44231 * 28 19 18 45 45 H 1.08999 * 113.46808 * 217.87742 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8576 1.1614 2.4117 7 6 2.6386 -0.7142 3.5625 8 6 2.9655 -2.0711 3.5037 9 6 3.4283 -2.7166 4.6287 10 6 3.5611 -2.0262 5.8280 11 6 3.2331 -0.6744 5.8942 12 6 2.7728 -0.0194 4.7667 13 8 3.3625 0.0172 7.0598 14 6 3.4738 -0.7574 8.2588 15 6 4.4886 -1.8818 8.0116 16 8 4.0109 -2.6865 6.9281 17 6 2.0399 -0.7213 -1.2493 18 6 3.5660 -0.6940 -1.4128 19 7 3.3557 -0.4731 -2.8516 20 6 4.0528 -0.7332 -4.0013 21 1 4.9534 -1.3279 -3.9639 22 6 3.6017 -0.2323 -5.2147 23 7 4.3275 -0.3877 -6.3015 24 14 1.9643 0.6624 -5.3052 25 1 1.7699 1.2015 -6.6751 26 1 0.8651 -0.2833 -4.9848 27 1 1.9563 1.7802 -4.3275 28 6 2.0705 0.1558 -2.5117 29 1 -0.3633 -1.0243 0.0831 30 1 -0.3633 0.5841 0.8456 31 1 -0.3633 0.4403 -0.9286 32 1 2.2491 -1.6318 1.1526 33 1 2.8592 -2.6126 2.5753 34 1 3.6852 -3.7645 4.5803 35 1 2.5178 1.0289 4.8171 36 1 3.8192 -0.1234 9.0754 37 1 2.5039 -1.1863 8.5107 38 1 5.4564 -1.4529 7.7520 39 1 4.5855 -2.4932 8.9087 40 1 1.5924 -1.7045 -1.3948 41 1 4.0440 -1.6468 -1.1853 42 1 4.0424 0.1473 -0.9096 43 1 5.2095 -0.7874 -6.2427 44 1 2.1518 1.2215 -2.2980 45 1 1.2744 -0.0730 -3.2203 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970867867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:21 Heat of formation + Delta-G solvation = -16.379208 kcal Electronic energy + Delta-G solvation = -27945.927100 eV Core-core repulsion = 23931.500500 eV Total energy + Delta-G solvation = -4014.426600 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.70296 -40.14951 -38.73076 -37.71636 -37.46704 -35.06385 -32.51170 -31.93633 -31.10512 -30.62616 -28.78884 -27.80240 -25.59618 -25.25371 -24.22376 -23.21696 -22.27564 -20.99216 -20.33757 -19.63727 -19.07912 -18.08087 -17.67895 -17.49345 -16.72644 -16.19466 -15.87799 -15.48311 -15.27435 -15.00651 -14.82361 -14.57128 -14.29521 -14.22654 -13.92345 -13.71280 -13.59865 -13.30295 -13.07049 -12.82116 -12.32623 -12.24946 -11.97214 -11.77204 -11.56802 -11.54851 -11.24990 -11.05932 -10.94900 -10.71088 -10.33883 -10.15945 -9.98921 -9.21012 -9.14677 -9.08470 -8.96317 -8.89165 -8.50405 -7.15552 -6.28619 -3.22592 0.49039 0.91855 2.43221 2.68696 2.74048 3.17732 3.41644 3.46307 3.56404 3.66504 3.69922 4.14760 4.29310 4.38302 4.53429 4.61009 4.61930 4.72039 4.75408 4.91424 4.92614 4.99181 4.99557 5.10777 5.38409 5.43100 5.49028 5.55853 5.67748 5.72443 5.76873 5.88587 5.92630 6.04387 6.09887 6.18561 6.24483 6.26864 6.33180 6.39617 6.41676 6.57875 6.91897 6.93776 7.12581 7.50903 8.19598 8.24347 8.98306 9.50880 10.37456 11.21268 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026127 B = 0.002286 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.438101 B =12248.046422 C =12801.014752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.152 3.848 3 H 0.091 0.909 4 N -0.713 5.713 5 C 0.562 3.438 6 O -0.537 6.537 7 C -0.128 4.128 8 C -0.078 4.078 9 C -0.120 4.120 10 C 0.073 3.927 11 C 0.040 3.960 12 C -0.053 4.053 13 O -0.304 6.304 14 C 0.020 3.980 15 C 0.019 3.981 16 O -0.305 6.305 17 C -0.142 4.142 18 C 0.129 3.871 19 N -0.629 5.629 20 C -0.304 4.304 21 H 0.082 0.918 22 C -0.026 4.026 23 N -0.934 5.934 24 Si 1.070 2.930 25 H -0.295 1.295 26 H -0.292 1.292 27 H -0.286 1.286 28 C 0.109 3.891 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.399 0.601 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.124 0.876 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.043 0.957 42 H 0.037 0.963 43 H 0.260 0.740 44 H 0.047 0.953 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.392 -5.020 31.423 32.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.047 3.953 3 H 0.109 0.891 4 N -0.364 5.364 5 C 0.349 3.651 6 O -0.415 6.415 7 C -0.131 4.131 8 C -0.097 4.097 9 C -0.139 4.139 10 C 0.027 3.973 11 C -0.005 4.005 12 C -0.072 4.072 13 O -0.219 6.219 14 C -0.056 4.056 15 C -0.056 4.056 16 O -0.219 6.219 17 C -0.162 4.162 18 C 0.003 3.997 19 N -0.357 5.357 20 C -0.430 4.430 21 H 0.100 0.900 22 C -0.225 4.225 23 N -0.576 5.576 24 Si 0.902 3.098 25 H -0.222 1.222 26 H -0.220 1.220 27 H -0.213 1.213 28 C -0.017 4.017 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.234 0.766 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.167 0.833 36 H 0.142 0.858 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.142 0.858 40 H 0.117 0.883 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.489 -3.508 30.202 30.896 hybrid contribution 1.437 -1.210 1.365 2.322 sum -4.052 -4.718 31.567 32.173 Atomic orbital electron populations 1.22140 0.95165 1.02026 1.02531 1.21046 0.93972 0.97516 0.82720 0.89053 1.45975 1.66806 1.14102 1.09486 1.18002 0.77771 0.86457 0.82916 1.90787 1.50364 1.15420 1.84966 1.19690 1.05294 0.94118 0.93993 1.21101 0.97128 0.93204 0.98296 1.20360 1.03274 1.01110 0.89140 1.19162 0.99069 0.90730 0.88326 1.18714 1.03500 0.90537 0.87730 1.20470 0.96461 1.01305 0.88977 1.86364 1.89214 1.33659 1.12668 1.23656 1.00311 0.94852 0.86749 1.23689 0.97347 0.94315 0.90295 1.86288 1.77567 1.34225 1.23801 1.23597 0.98529 1.00400 0.93672 1.22308 0.92507 0.98524 0.86386 1.45976 1.19342 1.69252 1.01117 1.20149 1.08471 1.30799 0.83551 0.90000 1.25746 1.05713 0.99839 0.91186 1.70921 1.12014 1.46347 1.28348 0.83726 0.75067 0.76212 0.74792 1.22216 1.22030 1.21276 1.22736 0.90417 0.95755 0.92816 0.92487 0.92350 0.91208 0.76565 0.84329 0.84021 0.83345 0.85845 0.90329 0.90153 0.85831 0.88250 0.93883 0.94503 0.92977 0.93543 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.48 37.16 0.35 -1.64 16 2 C 0.15 2.13 2.35 -67.93 -0.16 1.97 16 3 H 0.09 1.47 7.41 -51.93 -0.38 1.08 16 4 N -0.71 -8.58 4.89 -54.82 -0.27 -8.85 16 5 C 0.56 7.60 7.73 -12.44 -0.10 7.50 16 6 O -0.54 -9.14 16.00 5.29 0.08 -9.05 16 7 C -0.13 -1.45 5.87 -104.99 -0.62 -2.07 16 8 C -0.08 -0.70 9.53 -39.23 -0.37 -1.07 16 9 C -0.12 -1.06 9.94 -39.48 -0.39 -1.45 16 10 C 0.07 0.72 6.50 -38.91 -0.25 0.46 16 11 C 0.04 0.43 6.49 -39.18 -0.25 0.17 16 12 C -0.05 -0.62 9.50 -39.03 -0.37 -0.99 16 13 O -0.30 -2.96 10.42 -32.97 -0.34 -3.30 16 14 C 0.02 0.11 7.26 37.40 0.27 0.38 16 15 C 0.02 0.10 7.26 37.40 0.27 0.37 16 16 O -0.30 -2.64 10.41 -32.39 -0.34 -2.98 16 17 C -0.14 -2.30 3.52 -89.97 -0.32 -2.62 16 18 C 0.13 2.49 8.12 -8.50 -0.07 2.42 16 19 N -0.63 -15.49 3.69 -184.58 -0.68 -16.17 16 20 C -0.30 -8.83 11.08 -15.06 -0.17 -9.00 16 21 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 22 C -0.03 -0.79 5.50 -17.43 -0.10 -0.88 16 23 N -0.93 -29.76 13.70 55.49 0.76 -29.00 16 24 Si 1.07 26.94 25.16 -169.99 -4.28 22.66 16 25 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 26 H -0.29 -6.88 6.51 56.52 0.37 -6.51 16 27 H -0.29 -6.74 6.21 56.52 0.35 -6.39 16 28 C 0.11 2.26 5.27 -8.37 -0.04 2.22 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.40 3.78 6.62 -40.82 -0.27 3.50 16 33 H 0.14 0.90 6.39 -52.48 -0.34 0.57 16 34 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.15 1.81 7.64 -52.49 -0.40 1.41 16 36 H 0.12 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.72 8.11 -51.93 -0.42 0.30 16 43 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 44 H 0.05 0.97 7.50 -51.93 -0.39 0.58 16 45 H 0.05 1.16 4.72 -51.93 -0.25 0.92 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -36.39 366.01 -8.20 -44.58 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.33 Total: 0.81 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -2.31 Total: -4.23 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.19 Total: -54.02 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.60 Total: -15.33 kcal Atomic # 14 Polarization: 26.94 SS G_CDS: -4.28 Total: 22.66 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.39 -8.20 -44.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970867867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.203 kcal (2) G-P(sol) polarization free energy of solvation -36.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds