Wall clock time and date at job start Tue Mar 31 2020 18:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47148 * 2 1 4 4 N 1.46501 * 109.47136 * 119.99930 * 2 1 3 5 5 C 1.34774 * 120.00022 * 274.99616 * 4 2 1 6 6 O 1.21590 * 119.99778 * 0.02562 * 5 4 2 7 7 C 1.47609 * 119.99983 * 179.97438 * 5 4 2 8 8 C 1.39691 * 120.10067 * 359.72902 * 7 5 4 9 9 C 1.37722 * 119.97103 * 179.76940 * 8 7 5 10 10 C 1.39011 * 120.26622 * 0.56567 * 9 8 7 11 11 C 1.39261 * 120.04506 * 359.62606 * 10 9 8 12 12 C 1.38288 * 119.95843 * 0.11750 * 11 10 9 13 13 O 1.36150 * 120.76149 * 180.26023 * 11 10 9 14 14 C 1.43174 * 116.70936 * 342.85767 * 13 11 10 15 15 C 1.53466 * 108.23350 * 46.14271 * 14 13 11 16 16 O 1.35967 * 119.23964 * 179.53287 * 10 9 8 17 17 C 1.53004 * 109.46862 * 239.99803 * 2 1 3 18 18 C 1.53499 * 114.20194 * 175.68147 * 17 2 1 19 19 N 1.47073 * 87.98271 * 220.34656 * 18 17 2 20 20 C 1.36942 * 136.05527 * 207.08568 * 19 18 17 21 21 H 1.07994 * 120.00082 * 7.51165 * 20 19 18 22 22 C 1.38805 * 119.99575 * 187.50622 * 20 19 18 23 23 N 1.31620 * 120.00031 * 174.40324 * 22 20 19 24 24 Si 1.86807 * 120.00388 * 354.40343 * 22 20 19 25 25 H 1.48500 * 109.46966 * 174.95506 * 24 22 20 26 26 H 1.48493 * 109.47091 * 294.95681 * 24 22 20 27 27 H 1.48504 * 109.46855 * 54.95714 * 24 22 20 28 28 C 1.47068 * 87.88382 * 27.34125 * 19 18 17 29 29 H 1.08998 * 109.47162 * 184.63897 * 1 2 3 30 30 H 1.09006 * 109.46666 * 304.63623 * 1 2 3 31 31 H 1.08999 * 109.46923 * 64.63286 * 1 2 3 32 32 H 0.97002 * 119.99853 * 95.00141 * 4 2 1 33 33 H 1.08004 * 120.01440 * 0.02562 * 8 7 5 34 34 H 1.08000 * 119.87326 * 180.30275 * 9 8 7 35 35 H 1.08001 * 120.01967 * 179.97438 * 12 11 10 36 36 H 1.09001 * 109.70854 * 165.82680 * 14 13 11 37 37 H 1.08997 * 109.70999 * 286.45580 * 14 13 11 38 38 H 1.08997 * 109.70951 * 59.87019 * 15 14 13 39 39 H 1.08991 * 109.70636 * 180.49486 * 15 14 13 40 40 H 1.08999 * 113.41397 * 308.87998 * 17 2 1 41 41 H 1.08997 * 113.46896 * 105.57052 * 18 17 2 42 42 H 1.09003 * 113.52350 * 335.12944 * 18 17 2 43 43 H 0.97005 * 119.99470 * 355.00821 * 23 22 20 44 44 H 1.09002 * 113.46505 * 87.44231 * 28 19 18 45 45 H 1.08999 * 113.46808 * 217.87742 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8576 1.1614 2.4117 7 6 2.6386 -0.7142 3.5625 8 6 2.9655 -2.0711 3.5037 9 6 3.4283 -2.7166 4.6287 10 6 3.5611 -2.0262 5.8280 11 6 3.2331 -0.6744 5.8942 12 6 2.7728 -0.0194 4.7667 13 8 3.3625 0.0172 7.0598 14 6 3.4738 -0.7574 8.2588 15 6 4.4886 -1.8818 8.0116 16 8 4.0109 -2.6865 6.9281 17 6 2.0399 -0.7213 -1.2493 18 6 3.5660 -0.6940 -1.4128 19 7 3.3557 -0.4731 -2.8516 20 6 4.0528 -0.7332 -4.0013 21 1 4.9534 -1.3279 -3.9639 22 6 3.6017 -0.2323 -5.2147 23 7 4.3275 -0.3877 -6.3015 24 14 1.9643 0.6624 -5.3052 25 1 1.7699 1.2015 -6.6751 26 1 0.8651 -0.2833 -4.9848 27 1 1.9563 1.7802 -4.3275 28 6 2.0705 0.1558 -2.5117 29 1 -0.3633 -1.0243 0.0831 30 1 -0.3633 0.5841 0.8456 31 1 -0.3633 0.4403 -0.9286 32 1 2.2491 -1.6318 1.1526 33 1 2.8592 -2.6126 2.5753 34 1 3.6852 -3.7645 4.5803 35 1 2.5178 1.0289 4.8171 36 1 3.8192 -0.1234 9.0754 37 1 2.5039 -1.1863 8.5107 38 1 5.4564 -1.4529 7.7520 39 1 4.5855 -2.4932 8.9087 40 1 1.5924 -1.7045 -1.3948 41 1 4.0440 -1.6468 -1.1853 42 1 4.0424 0.1473 -0.9096 43 1 5.2095 -0.7874 -6.2427 44 1 2.1518 1.2215 -2.2980 45 1 1.2744 -0.0730 -3.2203 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970867867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:20 Heat of formation + Delta-G solvation = -42.924018 kcal Electronic energy + Delta-G solvation = -27947.078169 eV Core-core repulsion = 23931.500500 eV Total energy + Delta-G solvation = -4015.577670 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.35536 -41.26281 -40.12908 -38.35532 -38.29620 -36.33671 -34.52633 -32.87077 -31.83228 -31.56406 -29.70200 -29.36253 -26.95319 -26.18727 -25.50532 -24.28680 -23.09681 -22.31437 -21.35197 -21.02440 -19.87415 -19.54899 -18.86301 -18.31958 -17.68077 -17.36078 -16.86887 -16.52576 -16.16831 -16.00912 -15.78832 -15.75410 -15.44177 -15.13372 -14.99675 -14.93242 -14.82851 -14.47606 -14.31587 -13.66937 -13.56957 -13.32518 -13.11446 -13.04476 -12.88230 -12.58329 -12.34541 -12.22857 -12.03787 -12.00671 -11.66568 -11.55326 -11.30729 -11.14128 -11.03910 -10.78804 -10.13932 -9.78701 -9.23039 -9.22139 -8.61449 -5.47774 -0.31034 0.19091 1.39695 1.50520 1.67769 1.69501 1.91416 2.07458 2.31371 2.55519 2.72421 2.98413 3.17950 3.19462 3.47934 3.58027 3.74828 3.84222 3.92254 4.01105 4.06467 4.12667 4.21729 4.28716 4.31207 4.49281 4.53778 4.57333 4.59236 4.67302 4.71369 4.76482 4.80367 4.87819 4.96117 5.00017 5.08156 5.17955 5.20041 5.32197 5.38137 5.45623 5.53628 5.80853 5.95158 6.28651 6.55137 6.69825 7.20532 7.32661 8.27616 8.90023 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026127 B = 0.002286 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.438101 B =12248.046422 C =12801.014752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.160 3.840 3 H 0.069 0.931 4 N -0.701 5.701 5 C 0.563 3.437 6 O -0.580 6.580 7 C -0.142 4.142 8 C -0.067 4.067 9 C -0.120 4.120 10 C 0.072 3.928 11 C 0.031 3.969 12 C -0.071 4.071 13 O -0.326 6.326 14 C 0.012 3.988 15 C 0.014 3.986 16 O -0.314 6.314 17 C -0.103 4.103 18 C 0.126 3.874 19 N -0.662 5.662 20 C -0.290 4.290 21 H 0.050 0.950 22 C -0.088 4.088 23 N -0.971 5.971 24 Si 1.107 2.893 25 H -0.306 1.306 26 H -0.262 1.262 27 H -0.264 1.264 28 C 0.097 3.903 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.415 0.585 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.131 0.869 36 H 0.153 0.847 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.159 0.841 40 H 0.123 0.877 41 H 0.056 0.944 42 H 0.036 0.964 43 H 0.245 0.755 44 H 0.049 0.951 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.848 -6.632 34.095 35.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.055 3.945 3 H 0.087 0.913 4 N -0.353 5.353 5 C 0.351 3.649 6 O -0.461 6.461 7 C -0.145 4.145 8 C -0.086 4.086 9 C -0.138 4.138 10 C 0.025 3.975 11 C -0.014 4.014 12 C -0.091 4.091 13 O -0.241 6.241 14 C -0.062 4.062 15 C -0.061 4.061 16 O -0.228 6.228 17 C -0.123 4.123 18 C 0.001 3.999 19 N -0.391 5.391 20 C -0.418 4.418 21 H 0.068 0.932 22 C -0.280 4.280 23 N -0.616 5.616 24 Si 0.932 3.068 25 H -0.234 1.234 26 H -0.188 1.188 27 H -0.190 1.190 28 C -0.028 4.028 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.253 0.747 33 H 0.184 0.816 34 H 0.184 0.816 35 H 0.149 0.851 36 H 0.171 0.829 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.176 0.824 40 H 0.141 0.859 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.944 -5.167 32.954 34.071 hybrid contribution 2.026 -0.759 0.753 2.290 sum -4.918 -5.926 33.706 34.575 Atomic orbital electron populations 1.22100 0.93422 1.03356 1.02500 1.20808 0.95186 0.96161 0.82366 0.91275 1.45780 1.66307 1.14703 1.08468 1.18298 0.76986 0.85963 0.83624 1.90766 1.52327 1.17347 1.85640 1.19544 1.06896 0.95188 0.92884 1.21354 0.95686 0.92007 0.99561 1.20696 1.02400 1.02172 0.88560 1.19374 0.98476 0.90356 0.89246 1.18750 1.03681 0.91060 0.87900 1.20438 0.97782 1.00821 0.90031 1.86329 1.89205 1.35093 1.13503 1.24017 1.00919 0.95428 0.85849 1.24018 0.96973 0.94646 0.90442 1.86276 1.77361 1.35032 1.24107 1.23285 0.95974 1.00490 0.92523 1.22504 0.95164 0.99001 0.83262 1.46123 1.21040 1.69946 1.01968 1.20026 1.07250 1.28858 0.85667 0.93170 1.27114 1.08703 1.01065 0.91083 1.71026 1.11992 1.48902 1.29716 0.83309 0.72271 0.76464 0.74728 1.23418 1.18832 1.18952 1.22953 0.88508 0.96464 0.94880 0.90350 0.92983 0.90836 0.74731 0.81553 0.81576 0.85120 0.82922 0.89859 0.90054 0.82367 0.85944 0.92528 0.94589 0.94556 0.93377 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 9.48 71.98 0.68 -2.71 16 2 C 0.16 4.07 2.35 44.99 0.11 4.17 16 3 H 0.07 2.13 7.41 -2.39 -0.02 2.11 16 4 N -0.70 -15.10 4.89 -445.61 -2.18 -17.28 16 5 C 0.56 14.69 7.73 86.72 0.67 15.36 16 6 O -0.58 -19.90 16.00 -4.00 -0.06 -19.97 16 7 C -0.14 -3.09 5.87 -20.11 -0.12 -3.21 16 8 C -0.07 -1.03 9.53 22.50 0.21 -0.81 16 9 C -0.12 -1.78 9.94 22.33 0.22 -1.55 16 10 C 0.07 1.29 6.50 22.70 0.15 1.43 16 11 C 0.03 0.65 6.49 22.53 0.15 0.80 16 12 C -0.07 -1.69 9.50 22.63 0.22 -1.47 16 13 O -0.33 -6.18 10.42 -83.07 -0.87 -7.05 16 14 C 0.01 0.11 7.26 72.14 0.52 0.63 16 15 C 0.01 0.11 7.26 72.14 0.52 0.63 16 16 O -0.31 -4.70 10.41 -80.99 -0.84 -5.54 16 17 C -0.10 -3.00 3.52 -10.37 -0.04 -3.04 16 18 C 0.13 4.59 8.12 83.18 0.68 5.27 16 19 N -0.66 -31.85 3.69 -737.87 -2.72 -34.57 16 20 C -0.29 -17.09 11.08 84.03 0.93 -16.16 16 21 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 22 C -0.09 -5.35 5.50 84.86 0.47 -4.89 16 23 N -0.97 -63.72 13.70 21.65 0.30 -63.42 16 24 Si 1.11 53.75 25.16 68.60 1.73 55.47 16 25 H -0.31 -15.31 7.11 99.48 0.71 -14.61 16 26 H -0.26 -11.35 6.51 99.48 0.65 -10.71 16 27 H -0.26 -11.73 6.21 99.48 0.62 -11.11 16 28 C 0.10 3.79 5.27 83.27 0.44 4.23 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.41 6.28 6.62 -92.71 -0.61 5.67 16 33 H 0.17 1.48 6.39 -2.91 -0.02 1.46 16 34 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 35 H 0.13 3.45 7.64 -2.91 -0.02 3.42 16 36 H 0.15 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.16 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.12 3.11 8.14 -2.39 -0.02 3.10 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.04 1.35 8.11 -2.39 -0.02 1.33 16 43 H 0.25 16.17 8.73 -92.70 -0.81 15.36 16 44 H 0.05 1.89 7.50 -2.39 -0.02 1.87 16 45 H 0.06 2.20 4.72 -2.39 -0.01 2.18 16 Total: -1.00 -82.52 366.01 1.37 -81.14 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.22 Total: 12.53 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 5.81 Total: -1.32 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -4.61 Total: -115.27 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -1.77 Total: -32.55 kcal Atomic # 14 Polarization: 53.75 SS G_CDS: 1.73 Total: 55.47 kcal Total: -82.52 1.37 -81.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970867867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.216 kcal (2) G-P(sol) polarization free energy of solvation -82.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds