Wall clock time and date at job start Tue Mar 31 2020 18:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 N 1.46494 * 109.47388 * 239.99868 * 2 1 3 5 5 C 1.34778 * 119.99891 * 84.99712 * 4 2 1 6 6 O 1.21278 * 120.00050 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99835 * 180.02562 * 5 4 2 8 8 C 1.54889 * 129.09199 * 299.93943 * 7 5 4 9 9 C 1.57162 * 77.91784 * 180.16781 * 8 7 5 10 10 C 1.53008 * 129.25019 * 179.19945 * 9 8 7 11 11 F 1.39897 * 109.46826 * 301.27885 * 10 9 8 12 12 F 1.39895 * 109.47039 * 61.28249 * 10 9 8 13 13 F 1.39902 * 109.46785 * 181.28318 * 10 9 8 14 14 C 1.54416 * 83.73259 * 42.47493 * 9 8 7 15 15 C 1.54889 * 129.09138 * 60.06713 * 7 5 4 16 16 C 1.52997 * 109.46716 * 119.99680 * 2 1 3 17 17 C 1.53493 * 114.21093 * 300.00230 * 16 2 1 18 18 N 1.47063 * 87.98878 * 87.52231 * 17 16 2 19 19 C 1.36937 * 136.06294 * 207.09193 * 18 17 16 20 20 H 1.08002 * 119.99154 * 8.42658 * 19 18 17 21 21 C 1.38809 * 120.00444 * 188.43562 * 19 18 17 22 22 N 1.31615 * 120.00184 * 174.84707 * 21 19 18 23 23 Si 1.86804 * 119.99817 * 354.84535 * 21 19 18 24 24 H 1.48500 * 109.46921 * 174.85685 * 23 21 19 25 25 H 1.48499 * 109.46931 * 294.85807 * 23 21 19 26 26 H 1.48497 * 109.47301 * 54.85270 * 23 21 19 27 27 C 1.47077 * 87.88326 * 27.34112 * 18 17 16 28 28 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47114 * 300.00219 * 1 2 3 30 30 H 1.08997 * 109.46839 * 60.00326 * 1 2 3 31 31 H 0.96998 * 120.00027 * 265.00288 * 4 2 1 32 32 H 1.08998 * 114.97817 * 291.96286 * 8 7 5 33 33 H 1.08995 * 114.97864 * 67.13145 * 8 7 5 34 34 H 1.09000 * 114.93237 * 205.05846 * 14 9 8 35 35 H 1.08998 * 114.98091 * 70.03615 * 14 9 8 36 36 H 1.08998 * 114.97668 * 292.86485 * 15 7 5 37 37 H 1.09000 * 114.97861 * 68.04309 * 15 7 5 38 38 H 1.09006 * 113.40935 * 166.79909 * 16 2 1 39 39 H 1.08997 * 113.46804 * 332.73869 * 17 16 2 40 40 H 1.09009 * 113.52158 * 202.31079 * 17 16 2 41 41 H 0.97003 * 120.00032 * 357.02883 * 22 21 19 42 42 H 1.09000 * 113.46243 * 87.44347 * 27 18 17 43 43 H 1.08997 * 113.46338 * 217.88020 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8590 1.1586 -2.4115 7 6 2.6489 -0.7288 -3.5876 8 6 4.0019 -1.4470 -3.8172 9 6 3.2851 -1.6453 -5.2017 10 6 3.7928 -2.3471 -6.4630 11 9 4.9733 -1.7332 -6.8950 12 9 4.0445 -3.6935 -6.1783 13 9 2.8248 -2.2562 -7.4689 14 6 2.8743 -0.1693 -5.0091 15 6 2.0448 -1.9494 -4.3253 16 6 2.0399 -0.7212 1.2493 17 6 1.5897 -0.0846 2.5714 18 7 0.3743 -0.9090 2.4946 19 6 -0.9131 -0.8126 2.9511 20 1 -1.2576 0.1048 3.4051 21 6 -1.7752 -1.8938 2.8304 22 7 -2.9793 -1.8377 3.3588 23 14 -1.2263 -3.4286 1.9178 24 1 -2.2726 -4.4757 2.0364 25 1 -1.0124 -3.1026 0.4850 26 1 0.0424 -3.9275 2.5067 27 6 1.1519 -1.8859 1.7172 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2491 -1.6317 -1.1525 32 1 4.8722 -0.7913 -3.8452 33 1 4.1496 -2.3505 -3.2258 34 1 1.9671 0.1275 -5.5353 35 1 3.6884 0.5502 -5.0960 36 1 2.0703 -2.8844 -3.7655 37 1 1.0950 -1.7610 -4.8257 38 1 3.1025 -0.9609 1.2076 39 1 1.3943 0.9849 2.4939 40 1 2.2318 -0.3354 3.4159 41 1 -3.2490 -1.0583 3.8695 42 1 1.6788 -2.6123 2.3359 43 1 0.5833 -2.3509 0.9119 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970926775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:12 Heat of formation + Delta-G solvation = -18.827267 kcal Electronic energy + Delta-G solvation = -29280.884890 eV Core-core repulsion = 24724.495393 eV Total energy + Delta-G solvation = -4556.389496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.42533 -47.97252 -47.96438 -42.55723 -39.86717 -38.46692 -34.70331 -32.43574 -30.26192 -28.43645 -28.03016 -26.41057 -26.32363 -25.48927 -24.99444 -23.53989 -21.38621 -20.65637 -19.54805 -18.75354 -18.75207 -18.60626 -17.98461 -17.45516 -16.25922 -16.01892 -15.31311 -15.10163 -15.01210 -14.98375 -14.85762 -14.65333 -14.45909 -14.39447 -14.11998 -14.11893 -13.91803 -13.76281 -13.22272 -12.72146 -12.31373 -12.13356 -12.01453 -11.89660 -11.76595 -11.74714 -11.39908 -11.24871 -10.95461 -10.88485 -10.84908 -10.62553 -10.34987 -10.15136 -9.88127 -9.26977 -9.12997 -8.93743 -8.89746 -7.13925 -6.32862 -3.25855 2.20150 2.33990 2.99260 3.03427 3.14566 3.31381 3.37320 3.40085 3.58590 3.66501 3.85926 4.03953 4.21996 4.25278 4.54745 4.60009 4.72753 4.93961 5.01269 5.03373 5.08910 5.19079 5.33980 5.36863 5.38772 5.41545 5.49093 5.63061 5.79806 5.95428 6.13345 6.17226 6.22919 6.32628 6.37730 6.49716 6.71539 6.85688 7.08770 7.21537 7.52882 8.18537 8.21628 8.94915 9.47365 10.34100 11.17992 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.019426 B = 0.002862 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.049289 B = 9782.656382 C =10373.194815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.172 3.828 3 H 0.086 0.914 4 N -0.712 5.712 5 C 0.576 3.424 6 O -0.529 6.529 7 C -0.151 4.151 8 C -0.072 4.072 9 C -0.226 4.226 10 C 0.523 3.477 11 F -0.176 7.176 12 F -0.176 7.176 13 F -0.176 7.176 14 C -0.063 4.063 15 C -0.073 4.073 16 C -0.146 4.146 17 C 0.131 3.869 18 N -0.623 5.623 19 C -0.300 4.300 20 H 0.082 0.918 21 C -0.024 4.024 22 N -0.935 5.935 23 Si 1.069 2.931 24 H -0.297 1.297 25 H -0.292 1.292 26 H -0.288 1.288 27 C 0.097 3.903 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.036 0.964 31 H 0.399 0.601 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.041 0.959 41 H 0.261 0.739 42 H 0.044 0.956 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.032 -1.267 -18.321 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.069 3.931 3 H 0.104 0.896 4 N -0.362 5.362 5 C 0.360 3.640 6 O -0.406 6.406 7 C -0.154 4.154 8 C -0.110 4.110 9 C -0.227 4.227 10 C 0.469 3.531 11 F -0.158 7.158 12 F -0.157 7.157 13 F -0.157 7.157 14 C -0.101 4.101 15 C -0.110 4.110 16 C -0.166 4.166 17 C 0.004 3.996 18 N -0.352 5.352 19 C -0.426 4.426 20 H 0.100 0.900 21 C -0.223 4.223 22 N -0.577 5.577 23 Si 0.902 3.098 24 H -0.224 1.224 25 H -0.220 1.220 26 H -0.215 1.215 27 C -0.028 4.028 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.055 0.945 31 H 0.233 0.767 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.046 -1.883 -18.759 24.757 hybrid contribution 0.780 0.745 0.380 1.143 sum 16.826 -1.139 -18.379 24.944 Atomic orbital electron populations 1.22233 0.93073 1.03407 1.02217 1.20674 0.95582 0.95748 0.81133 0.89639 1.46069 1.66370 1.14084 1.09673 1.18296 0.77491 0.86085 0.82146 1.90733 1.49787 1.15539 1.84493 1.23751 0.98808 0.97868 0.94981 1.24487 0.95594 1.00472 0.90414 1.25340 1.02604 1.01100 0.93667 1.18399 0.75092 0.76502 0.83119 1.93201 1.48798 1.82891 1.90864 1.93206 1.94212 1.34749 1.93535 1.93209 1.63379 1.95989 1.63122 1.23693 1.02402 0.91552 0.92466 1.24036 0.95624 0.97464 0.93924 1.23251 0.98388 0.99650 0.95290 1.22287 0.88392 0.96219 0.92687 1.46065 1.05055 1.20569 1.63463 1.20078 0.83867 1.00536 1.38129 0.89990 1.25662 0.94874 1.00685 1.01066 1.70909 1.19215 1.31652 1.35910 0.83750 0.74431 0.76198 0.75413 1.22408 1.22026 1.21532 1.22870 0.92239 0.93123 0.94593 0.91976 0.88861 0.94456 0.76728 0.88939 0.88668 0.89016 0.89018 0.88554 0.88976 0.90343 0.93439 0.94166 0.92884 0.93829 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.06 37.16 0.30 -2.55 16 2 C 0.17 2.64 2.76 -67.93 -0.19 2.45 16 3 H 0.09 1.37 7.58 -51.93 -0.39 0.97 16 4 N -0.71 -8.92 5.08 -53.81 -0.27 -9.19 16 5 C 0.58 7.49 7.90 -10.99 -0.09 7.40 16 6 O -0.53 -8.99 16.76 5.56 0.09 -8.89 16 7 C -0.15 -1.40 3.36 -172.27 -0.58 -1.98 16 8 C -0.07 -0.50 7.95 -24.72 -0.20 -0.70 16 9 C -0.23 -1.73 3.03 -169.84 -0.51 -2.25 16 10 C 0.52 4.40 3.63 37.16 0.13 4.54 16 11 F -0.18 -1.56 17.32 2.25 0.04 -1.52 16 12 F -0.18 -1.56 17.32 2.25 0.04 -1.52 16 13 F -0.18 -1.62 17.32 2.25 0.04 -1.58 16 14 C -0.06 -0.53 7.78 -26.71 -0.21 -0.74 16 15 C -0.07 -0.57 7.84 -25.98 -0.20 -0.77 16 16 C -0.15 -2.21 4.25 -89.97 -0.38 -2.60 16 17 C 0.13 2.35 7.86 -8.51 -0.07 2.29 16 18 N -0.62 -13.99 2.09 -184.59 -0.39 -14.38 16 19 C -0.30 -8.13 9.92 -15.06 -0.15 -8.28 16 20 H 0.08 2.38 8.05 -52.49 -0.42 1.96 16 21 C -0.02 -0.68 5.50 -17.43 -0.10 -0.78 16 22 N -0.93 -28.83 13.71 55.49 0.76 -28.07 16 23 Si 1.07 25.65 24.89 -169.99 -4.23 21.42 16 24 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.29 -6.46 5.95 56.52 0.34 -6.12 16 26 H -0.29 -6.44 6.22 56.52 0.35 -6.09 16 27 C 0.10 1.83 4.68 -8.36 -0.04 1.80 16 28 H 0.06 1.27 5.50 -51.93 -0.29 0.99 16 29 H 0.09 2.00 5.93 -51.93 -0.31 1.69 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.40 4.01 8.60 -40.82 -0.35 3.66 16 32 H 0.09 0.59 7.91 -51.93 -0.41 0.18 16 33 H 0.09 0.53 7.97 -51.93 -0.41 0.11 16 34 H 0.09 0.77 7.94 -51.93 -0.41 0.36 16 35 H 0.09 0.72 7.91 -51.93 -0.41 0.31 16 36 H 0.10 0.63 7.97 -51.93 -0.41 0.22 16 37 H 0.09 0.72 7.93 -51.93 -0.41 0.31 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 40 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 41 H 0.26 7.98 8.73 -40.82 -0.36 7.63 16 42 H 0.04 0.82 7.61 -51.93 -0.40 0.42 16 43 H 0.06 1.07 3.47 -51.93 -0.18 0.89 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -31.95 353.89 -6.63 -38.58 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -5.77 Total: 1.99 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -2.27 Total: -2.17 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.10 Total: -51.64 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.12 Total: -4.63 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -4.23 Total: 21.42 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.95 -6.63 -38.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970926775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.750 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds