Wall clock time and date at job start Tue Mar 31 2020 18:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 N 1.46494 * 109.47388 * 239.99868 * 2 1 3 5 5 C 1.34778 * 119.99891 * 84.99712 * 4 2 1 6 6 O 1.21278 * 120.00050 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99835 * 180.02562 * 5 4 2 8 8 C 1.54889 * 129.09199 * 299.93943 * 7 5 4 9 9 C 1.57162 * 77.91784 * 180.16781 * 8 7 5 10 10 C 1.53008 * 129.25019 * 179.19945 * 9 8 7 11 11 F 1.39897 * 109.46826 * 301.27885 * 10 9 8 12 12 F 1.39895 * 109.47039 * 61.28249 * 10 9 8 13 13 F 1.39902 * 109.46785 * 181.28318 * 10 9 8 14 14 C 1.54416 * 83.73259 * 42.47493 * 9 8 7 15 15 C 1.54889 * 129.09138 * 60.06713 * 7 5 4 16 16 C 1.52997 * 109.46716 * 119.99680 * 2 1 3 17 17 C 1.53493 * 114.21093 * 300.00230 * 16 2 1 18 18 N 1.47063 * 87.98878 * 87.52231 * 17 16 2 19 19 C 1.36937 * 136.06294 * 207.09193 * 18 17 16 20 20 H 1.08002 * 119.99154 * 8.42658 * 19 18 17 21 21 C 1.38809 * 120.00444 * 188.43562 * 19 18 17 22 22 N 1.31615 * 120.00184 * 174.84707 * 21 19 18 23 23 Si 1.86804 * 119.99817 * 354.84535 * 21 19 18 24 24 H 1.48500 * 109.46921 * 174.85685 * 23 21 19 25 25 H 1.48499 * 109.46931 * 294.85807 * 23 21 19 26 26 H 1.48497 * 109.47301 * 54.85270 * 23 21 19 27 27 C 1.47077 * 87.88326 * 27.34112 * 18 17 16 28 28 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47114 * 300.00219 * 1 2 3 30 30 H 1.08997 * 109.46839 * 60.00326 * 1 2 3 31 31 H 0.96998 * 120.00027 * 265.00288 * 4 2 1 32 32 H 1.08998 * 114.97817 * 291.96286 * 8 7 5 33 33 H 1.08995 * 114.97864 * 67.13145 * 8 7 5 34 34 H 1.09000 * 114.93237 * 205.05846 * 14 9 8 35 35 H 1.08998 * 114.98091 * 70.03615 * 14 9 8 36 36 H 1.08998 * 114.97668 * 292.86485 * 15 7 5 37 37 H 1.09000 * 114.97861 * 68.04309 * 15 7 5 38 38 H 1.09006 * 113.40935 * 166.79909 * 16 2 1 39 39 H 1.08997 * 113.46804 * 332.73869 * 17 16 2 40 40 H 1.09009 * 113.52158 * 202.31079 * 17 16 2 41 41 H 0.97003 * 120.00032 * 357.02883 * 22 21 19 42 42 H 1.09000 * 113.46243 * 87.44347 * 27 18 17 43 43 H 1.08997 * 113.46338 * 217.88020 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8590 1.1586 -2.4115 7 6 2.6489 -0.7288 -3.5876 8 6 4.0019 -1.4470 -3.8172 9 6 3.2851 -1.6453 -5.2017 10 6 3.7928 -2.3471 -6.4630 11 9 4.9733 -1.7332 -6.8950 12 9 4.0445 -3.6935 -6.1783 13 9 2.8248 -2.2562 -7.4689 14 6 2.8743 -0.1693 -5.0091 15 6 2.0448 -1.9494 -4.3253 16 6 2.0399 -0.7212 1.2493 17 6 1.5897 -0.0846 2.5714 18 7 0.3743 -0.9090 2.4946 19 6 -0.9131 -0.8126 2.9511 20 1 -1.2576 0.1048 3.4051 21 6 -1.7752 -1.8938 2.8304 22 7 -2.9793 -1.8377 3.3588 23 14 -1.2263 -3.4286 1.9178 24 1 -2.2726 -4.4757 2.0364 25 1 -1.0124 -3.1026 0.4850 26 1 0.0424 -3.9275 2.5067 27 6 1.1519 -1.8859 1.7172 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2491 -1.6317 -1.1525 32 1 4.8722 -0.7913 -3.8452 33 1 4.1496 -2.3505 -3.2258 34 1 1.9671 0.1275 -5.5353 35 1 3.6884 0.5502 -5.0960 36 1 2.0703 -2.8844 -3.7655 37 1 1.0950 -1.7610 -4.8257 38 1 3.1025 -0.9609 1.2076 39 1 1.3943 0.9849 2.4939 40 1 2.2318 -0.3354 3.4159 41 1 -3.2490 -1.0583 3.8695 42 1 1.6788 -2.6123 2.3359 43 1 0.5833 -2.3509 0.9119 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970926775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:11 Heat of formation + Delta-G solvation = -39.348129 kcal Electronic energy + Delta-G solvation = -29281.774741 eV Core-core repulsion = 24724.495393 eV Total energy + Delta-G solvation = -4557.279348 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.08057 -48.63629 -48.62109 -43.20742 -41.20455 -39.69536 -35.99446 -34.46325 -31.61700 -29.84892 -29.11392 -26.98637 -26.98036 -26.90274 -26.16934 -24.91336 -22.80554 -21.68042 -20.75304 -19.86664 -19.40690 -19.39996 -19.24060 -18.63648 -17.34108 -17.26637 -16.91132 -16.22642 -15.96436 -15.74382 -15.63346 -15.60377 -15.26890 -15.20032 -15.08847 -15.05652 -14.92807 -14.78322 -14.78194 -14.06272 -13.55989 -13.34819 -13.08007 -12.95584 -12.89379 -12.77080 -12.67137 -12.47695 -12.30271 -12.14989 -12.01636 -11.66864 -11.53361 -11.47137 -11.20811 -11.04777 -10.85491 -10.77720 -10.12315 -9.05967 -8.54928 -5.38116 1.38540 1.39481 1.51270 1.54487 1.69689 2.04241 2.45487 2.52458 2.60524 2.74275 3.01653 3.08705 3.21664 3.29979 3.35435 3.53048 3.59870 3.63414 3.75729 3.85955 4.26541 4.45438 4.48939 4.49434 4.51512 4.64196 4.71579 4.74363 4.78211 4.79336 4.82733 4.84611 4.86560 4.89674 5.02190 5.06240 5.29991 5.35653 5.50207 5.62756 6.02893 6.55659 6.77842 7.21100 7.41410 8.36814 8.98299 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.019426 B = 0.002862 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.049289 B = 9782.656382 C =10373.194815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.180 3.820 3 H 0.083 0.917 4 N -0.701 5.701 5 C 0.578 3.422 6 O -0.575 6.575 7 C -0.165 4.165 8 C -0.055 4.055 9 C -0.220 4.220 10 C 0.526 3.474 11 F -0.179 7.179 12 F -0.177 7.177 13 F -0.183 7.183 14 C -0.069 4.069 15 C -0.068 4.068 16 C -0.111 4.111 17 C 0.124 3.876 18 N -0.654 5.654 19 C -0.272 4.272 20 H 0.043 0.957 21 C -0.090 4.090 22 N -0.979 5.979 23 Si 1.106 2.894 24 H -0.316 1.316 25 H -0.265 1.265 26 H -0.255 1.255 27 C 0.090 3.910 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.416 0.584 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.130 0.870 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.243 0.757 42 H 0.062 0.938 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.795 -3.024 -19.835 28.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.076 3.924 3 H 0.101 0.899 4 N -0.351 5.351 5 C 0.364 3.636 6 O -0.454 6.454 7 C -0.168 4.168 8 C -0.092 4.092 9 C -0.221 4.221 10 C 0.472 3.528 11 F -0.160 7.160 12 F -0.158 7.158 13 F -0.164 7.164 14 C -0.107 4.107 15 C -0.106 4.106 16 C -0.130 4.130 17 C -0.002 4.002 18 N -0.384 5.384 19 C -0.400 4.400 20 H 0.061 0.939 21 C -0.280 4.280 22 N -0.626 5.626 23 Si 0.932 3.068 24 H -0.245 1.245 25 H -0.191 1.191 26 H -0.180 1.180 27 C -0.034 4.034 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.253 0.747 32 H 0.119 0.881 33 H 0.137 0.863 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.134 0.866 37 H 0.105 0.895 38 H 0.147 0.853 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.080 0.920 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 19.898 -3.640 -20.292 28.652 hybrid contribution -0.363 1.463 0.840 1.725 sum 19.535 -2.177 -19.452 27.654 Atomic orbital electron populations 1.22055 0.96090 1.01538 1.00169 1.20370 0.92930 0.96328 0.82783 0.89923 1.45839 1.65830 1.14800 1.08677 1.18786 0.76314 0.85581 0.82928 1.90719 1.51690 1.17765 1.85254 1.23528 1.01061 0.98647 0.93565 1.24524 0.94210 1.01060 0.89390 1.25139 1.03027 1.00167 0.93766 1.18423 0.74852 0.76449 0.83126 1.93198 1.48961 1.82931 1.90936 1.93204 1.94208 1.34865 1.93514 1.93199 1.63654 1.96015 1.63540 1.23782 1.02449 0.92438 0.92038 1.24107 0.95457 0.97437 0.93566 1.23019 1.00375 0.96533 0.93094 1.22559 0.86677 0.95765 0.95158 1.46123 1.04807 1.23253 1.64172 1.19840 0.86527 0.98516 1.35141 0.93901 1.27012 0.94554 1.04105 1.02365 1.71026 1.21263 1.31514 1.38776 0.83363 0.74893 0.72393 0.76120 1.24469 1.19119 1.17978 1.23116 0.92149 0.93930 0.94207 0.93563 0.92278 0.95201 0.74711 0.88062 0.86260 0.89663 0.88597 0.86552 0.89462 0.85268 0.93926 0.92044 0.94807 0.92032 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 8.06 71.98 0.58 -4.64 16 2 C 0.18 5.06 2.76 44.99 0.12 5.18 16 3 H 0.08 2.46 7.58 -2.39 -0.02 2.45 16 4 N -0.70 -15.00 5.08 -442.55 -2.25 -17.25 16 5 C 0.58 13.60 7.90 87.66 0.69 14.29 16 6 O -0.58 -18.94 16.76 -3.02 -0.05 -18.99 16 7 C -0.16 -2.56 3.36 -63.68 -0.21 -2.78 16 8 C -0.05 -0.52 7.95 31.90 0.25 -0.27 16 9 C -0.22 -2.69 3.03 -62.12 -0.19 -2.88 16 10 C 0.53 7.50 3.63 71.98 0.26 7.76 16 11 F -0.18 -2.74 17.32 44.97 0.78 -1.97 16 12 F -0.18 -2.62 17.32 44.97 0.78 -1.85 16 13 F -0.18 -3.04 17.32 44.97 0.78 -2.26 16 14 C -0.07 -1.03 7.78 30.61 0.24 -0.79 16 15 C -0.07 -0.84 7.84 31.08 0.24 -0.60 16 16 C -0.11 -2.87 4.25 -10.37 -0.04 -2.92 16 17 C 0.12 4.13 7.86 83.18 0.65 4.78 16 18 N -0.65 -28.57 2.09 -737.90 -1.54 -30.11 16 19 C -0.27 -15.15 9.92 84.03 0.83 -14.32 16 20 H 0.04 2.65 8.05 -2.91 -0.02 2.63 16 21 C -0.09 -5.22 5.50 84.86 0.47 -4.76 16 22 N -0.98 -63.22 13.71 21.65 0.30 -62.92 16 23 Si 1.11 51.00 24.89 68.60 1.71 52.70 16 24 H -0.32 -15.49 7.11 99.48 0.71 -14.78 16 25 H -0.26 -10.86 5.95 99.48 0.59 -10.27 16 26 H -0.25 -10.25 6.22 99.48 0.62 -9.63 16 27 C 0.09 3.04 4.68 83.27 0.39 3.43 16 28 H 0.05 1.84 5.50 -2.39 -0.01 1.83 16 29 H 0.06 2.59 5.93 -2.39 -0.01 2.57 16 30 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.42 6.21 8.60 -92.71 -0.80 5.41 16 32 H 0.10 0.85 7.91 -2.39 -0.02 0.83 16 33 H 0.12 0.63 7.97 -2.39 -0.02 0.61 16 34 H 0.08 1.34 7.94 -2.39 -0.02 1.32 16 35 H 0.10 1.31 7.91 -2.39 -0.02 1.30 16 36 H 0.12 0.99 7.97 -2.39 -0.02 0.97 16 37 H 0.09 1.17 7.93 -2.39 -0.02 1.15 16 38 H 0.13 2.25 8.14 -2.38 -0.02 2.23 16 39 H 0.04 1.45 8.12 -2.39 -0.02 1.43 16 40 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.24 15.86 8.73 -92.71 -0.81 15.06 16 42 H 0.06 1.94 7.61 -2.39 -0.02 1.93 16 43 H 0.05 1.82 3.47 -2.39 -0.01 1.81 16 Total: -1.00 -74.16 353.89 4.82 -69.35 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.02 Total: 11.77 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 4.29 Total: 1.52 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -3.49 Total: -110.28 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.05 Total: -18.99 kcal Atomic # 9 Polarization: -8.41 SS G_CDS: 2.34 Total: -6.07 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 1.71 Total: 52.70 kcal Total: -74.16 4.82 -69.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970926775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.997 kcal (2) G-P(sol) polarization free energy of solvation -74.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds