Wall clock time and date at job start Tue Mar 31 2020 18:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47325 * 2 1 4 4 N 1.46504 * 109.47260 * 119.99925 * 2 1 3 5 5 C 1.34775 * 119.99924 * 275.00080 * 4 2 1 6 6 O 1.21281 * 120.00116 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00191 * 180.02562 * 5 4 2 8 8 C 1.54897 * 129.08482 * 299.94107 * 7 5 4 9 9 C 1.57168 * 77.91198 * 180.16052 * 8 7 5 10 10 C 1.53000 * 129.24765 * 179.19364 * 9 8 7 11 11 F 1.39899 * 109.47265 * 301.28492 * 10 9 8 12 12 F 1.39899 * 109.47455 * 61.28457 * 10 9 8 13 13 F 1.39898 * 109.47428 * 181.28551 * 10 9 8 14 14 C 1.54405 * 129.01553 * 180.02562 * 7 5 4 15 15 C 1.54882 * 83.77577 * 317.35417 * 9 8 7 16 16 C 1.52995 * 109.47343 * 240.00285 * 2 1 3 17 17 C 1.53491 * 114.20857 * 64.99411 * 16 2 1 18 18 N 1.47062 * 87.98637 * 220.14932 * 17 16 2 19 19 C 1.36942 * 136.05672 * 207.07979 * 18 17 16 20 20 H 1.07998 * 119.99727 * 7.56050 * 19 18 17 21 21 C 1.38811 * 119.99866 * 187.55040 * 19 18 17 22 22 N 1.31622 * 120.00072 * 174.37798 * 21 19 18 23 23 Si 1.86796 * 120.00091 * 354.38490 * 21 19 18 24 24 H 1.48503 * 109.47078 * 174.94885 * 23 21 19 25 25 H 1.48498 * 109.47332 * 294.94653 * 23 21 19 26 26 H 1.48499 * 109.47409 * 54.94989 * 23 21 19 27 27 C 1.47064 * 87.88500 * 27.34268 * 18 17 16 28 28 H 1.08997 * 109.47334 * 60.00106 * 1 2 3 29 29 H 1.09008 * 109.46759 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47032 * 299.99525 * 1 2 3 31 31 H 0.96997 * 119.99854 * 95.00695 * 4 2 1 32 32 H 1.08999 * 114.97496 * 291.95214 * 8 7 5 33 33 H 1.09000 * 114.97908 * 67.12871 * 8 7 5 34 34 H 1.09000 * 114.93495 * 293.12954 * 14 7 5 35 35 H 1.09005 * 114.93379 * 68.09747 * 14 7 5 36 36 H 1.09000 * 116.12313 * 290.12515 * 15 9 8 37 37 H 1.09001 * 113.83615 * 154.96117 * 15 9 8 38 38 H 1.09003 * 113.28316 * 198.06633 * 16 2 1 39 39 H 1.09008 * 113.46703 * 105.37266 * 17 16 2 40 40 H 1.08994 * 113.52122 * 334.94341 * 17 16 2 41 41 H 0.97007 * 119.99699 * 354.88690 * 22 21 19 42 42 H 1.09003 * 113.46476 * 87.43619 * 27 18 17 43 43 H 1.09000 * 113.46584 * 217.87658 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8582 1.1584 2.4117 7 6 2.6500 -0.7284 3.5875 8 6 2.0470 -1.9497 4.3252 9 6 3.3195 -1.6364 5.1929 10 6 3.8279 -2.3379 6.4540 11 9 2.8452 -2.2803 7.4480 12 9 4.1158 -3.6750 6.1599 13 9 4.9875 -1.7000 6.9072 14 6 2.8750 -0.1691 5.0090 15 6 4.0036 -1.4457 3.8165 16 6 2.0400 -0.7212 -1.2492 17 6 1.6919 -0.0177 -2.5683 18 7 1.4191 -1.3435 -3.1432 19 6 1.4516 -1.9018 -4.3932 20 1 1.8528 -1.3414 -5.2247 21 6 0.9691 -3.1882 -4.5915 22 7 0.8975 -3.6839 -5.8087 23 14 0.4213 -4.2157 -3.1309 24 1 -0.1618 -5.4928 -3.6150 25 1 1.5904 -4.5035 -2.2617 26 1 -0.6004 -3.4679 -2.3549 27 6 1.0896 -1.8041 -1.7860 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 2.2491 -1.6317 1.1526 32 1 1.0972 -1.7619 4.8261 33 1 2.0729 -2.8845 3.7654 34 1 3.6746 0.5670 5.0919 35 1 1.9659 0.1070 5.5434 36 1 4.1517 -2.3491 3.2249 37 1 4.8733 -0.7893 3.8441 38 1 3.0811 -1.0345 -1.1710 39 1 2.5412 0.4882 -3.0277 40 1 0.8084 0.6172 -2.5027 41 1 1.1113 -3.1260 -6.5729 42 1 0.0470 -1.6404 -1.5133 43 1 1.4256 -2.8201 -1.5789 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970926777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:17 Heat of formation + Delta-G solvation = -23.225924 kcal Electronic energy + Delta-G solvation = -28825.442219 eV Core-core repulsion = 24268.861983 eV Total energy + Delta-G solvation = -4556.580237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.46293 -48.00940 -48.00165 -42.63204 -39.84810 -38.50903 -35.04546 -32.51309 -30.82643 -28.55869 -27.63245 -26.47968 -26.39623 -25.52192 -25.30719 -23.76291 -21.36245 -20.69724 -19.61633 -18.79297 -18.79089 -18.71966 -18.06991 -17.50854 -16.41045 -16.17888 -15.60323 -15.22637 -15.04425 -14.97639 -14.71098 -14.69635 -14.56188 -14.43060 -14.17965 -14.15547 -14.15409 -13.61300 -13.23119 -13.06225 -12.42850 -12.35928 -12.15009 -12.13190 -11.95666 -11.83052 -11.54869 -11.44578 -11.07802 -11.02409 -10.94938 -10.58976 -10.43948 -10.35890 -9.98439 -9.27234 -9.17298 -9.11251 -8.92292 -7.18685 -6.33386 -3.27261 2.15520 2.20639 2.87321 2.98248 3.09051 3.32937 3.34699 3.37885 3.58870 3.59607 3.78244 3.94557 4.17112 4.20635 4.48634 4.55025 4.64690 4.86936 4.95026 4.97835 5.08336 5.13685 5.26090 5.28768 5.30164 5.31983 5.40441 5.44034 5.49756 5.75756 5.79782 5.99184 6.07557 6.17131 6.23231 6.33833 6.38220 6.47283 6.86357 7.07727 7.37222 8.03673 8.20075 8.93726 9.45851 10.32424 11.16509 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.018243 B = 0.002648 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.482063 B =10572.586187 C =11472.569355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.154 3.846 3 H 0.090 0.910 4 N -0.712 5.712 5 C 0.577 3.423 6 O -0.530 6.530 7 C -0.152 4.152 8 C -0.073 4.073 9 C -0.225 4.225 10 C 0.523 3.477 11 F -0.176 7.176 12 F -0.175 7.175 13 F -0.176 7.176 14 C -0.063 4.063 15 C -0.072 4.072 16 C -0.143 4.143 17 C 0.132 3.868 18 N -0.628 5.628 19 C -0.303 4.303 20 H 0.083 0.917 21 C -0.026 4.026 22 N -0.934 5.934 23 Si 1.072 2.928 24 H -0.295 1.295 25 H -0.294 1.294 26 H -0.287 1.287 27 C 0.094 3.906 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.402 0.598 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.261 0.739 42 H 0.057 0.943 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.932 4.430 26.198 27.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.050 3.950 3 H 0.108 0.892 4 N -0.362 5.362 5 C 0.361 3.639 6 O -0.406 6.406 7 C -0.156 4.156 8 C -0.110 4.110 9 C -0.227 4.227 10 C 0.469 3.531 11 F -0.157 7.157 12 F -0.156 7.156 13 F -0.157 7.157 14 C -0.101 4.101 15 C -0.110 4.110 16 C -0.163 4.163 17 C 0.005 3.995 18 N -0.356 5.356 19 C -0.430 4.430 20 H 0.100 0.900 21 C -0.225 4.225 22 N -0.577 5.577 23 Si 0.905 3.095 24 H -0.223 1.223 25 H -0.222 1.222 26 H -0.214 1.214 27 C -0.031 4.031 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.237 0.763 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.177 3.663 26.388 26.967 hybrid contribution 0.763 0.903 -0.223 1.203 sum 4.940 4.566 26.165 27.016 Atomic orbital electron populations 1.22323 0.95041 1.02688 1.02382 1.20969 0.94290 0.97156 0.82599 0.89167 1.46053 1.66406 1.14304 1.09408 1.18343 0.77318 0.86044 0.82200 1.90731 1.49854 1.15482 1.84581 1.23741 0.98957 0.97959 0.94897 1.24505 0.95224 0.97342 0.93960 1.25326 1.02373 1.01183 0.93786 1.18392 0.75097 0.76548 0.83089 1.93205 1.62395 1.96193 1.63919 1.93212 1.93548 1.35554 1.93328 1.93206 1.50461 1.81828 1.90240 1.23693 1.02188 0.91792 0.92413 1.24030 0.95703 1.00696 0.90555 1.23594 1.00507 0.99343 0.92838 1.22313 0.97886 0.89994 0.89322 1.45914 1.80436 1.06473 1.02752 1.20162 1.39160 1.00432 0.83214 0.89971 1.25735 0.98487 0.95722 1.02554 1.70915 1.50556 1.38661 0.97521 0.83689 0.75963 0.75863 0.74010 1.22254 1.22204 1.21430 1.23087 0.97058 0.96681 0.86292 0.90903 0.91607 0.92584 0.76333 0.88868 0.88537 0.89037 0.88993 0.88501 0.89030 0.88282 0.93595 0.94070 0.92908 0.92601 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 8.22 37.16 0.31 -1.84 16 2 C 0.15 1.97 2.76 -67.93 -0.19 1.78 16 3 H 0.09 1.22 7.58 -51.93 -0.39 0.82 16 4 N -0.71 -7.59 5.08 -53.81 -0.27 -7.87 16 5 C 0.58 6.47 7.90 -10.98 -0.09 6.39 16 6 O -0.53 -7.91 16.76 5.56 0.09 -7.82 16 7 C -0.15 -1.23 3.36 -172.27 -0.58 -1.81 16 8 C -0.07 -0.47 7.95 -24.73 -0.20 -0.67 16 9 C -0.23 -1.56 3.03 -169.86 -0.51 -2.08 16 10 C 0.52 4.13 3.63 37.16 0.13 4.26 16 11 F -0.18 -1.49 17.32 2.25 0.04 -1.46 16 12 F -0.18 -1.50 17.32 2.25 0.04 -1.46 16 13 F -0.18 -1.50 17.32 2.25 0.04 -1.46 16 14 C -0.06 -0.47 7.78 -26.71 -0.21 -0.68 16 15 C -0.07 -0.47 7.84 -25.97 -0.20 -0.68 16 16 C -0.14 -2.19 4.14 -89.98 -0.37 -2.56 16 17 C 0.13 2.43 8.10 -8.52 -0.07 2.36 16 18 N -0.63 -14.82 3.69 -184.62 -0.68 -15.51 16 19 C -0.30 -8.60 11.08 -15.06 -0.17 -8.77 16 20 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 21 C -0.03 -0.77 5.50 -17.43 -0.10 -0.87 16 22 N -0.93 -29.23 13.70 55.49 0.76 -28.47 16 23 Si 1.07 25.98 25.16 -169.99 -4.28 21.70 16 24 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.29 -6.61 6.51 56.52 0.37 -6.25 16 26 H -0.29 -6.41 6.20 56.52 0.35 -6.06 16 27 C 0.09 1.81 4.83 -8.38 -0.04 1.77 16 28 H 0.07 0.97 6.77 -51.93 -0.35 0.62 16 29 H 0.07 0.85 6.33 -51.92 -0.33 0.52 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.40 3.53 8.60 -40.82 -0.35 3.18 16 32 H 0.09 0.57 7.91 -51.93 -0.41 0.16 16 33 H 0.10 0.52 7.97 -51.93 -0.41 0.11 16 34 H 0.09 0.65 7.95 -51.93 -0.41 0.24 16 35 H 0.09 0.65 7.91 -51.93 -0.41 0.24 16 36 H 0.10 0.53 7.97 -51.93 -0.41 0.11 16 37 H 0.09 0.57 7.93 -51.93 -0.41 0.16 16 38 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 40 H 0.04 0.72 6.75 -51.93 -0.35 0.37 16 41 H 0.26 8.07 8.73 -40.82 -0.36 7.71 16 42 H 0.06 1.05 4.97 -51.93 -0.26 0.79 16 43 H 0.05 0.98 4.73 -51.93 -0.25 0.73 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -33.18 356.85 -6.84 -40.02 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.68 Total: 0.31 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -2.28 Total: -3.37 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.19 Total: -51.84 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.09 Total: -7.82 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.12 Total: -4.38 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -4.28 Total: 21.70 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.18 -6.84 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970926777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.794 kcal (2) G-P(sol) polarization free energy of solvation -33.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds