Wall clock time and date at job start Tue Mar 31 2020 18:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47325 * 2 1 4 4 N 1.46504 * 109.47260 * 119.99925 * 2 1 3 5 5 C 1.34775 * 119.99924 * 275.00080 * 4 2 1 6 6 O 1.21281 * 120.00116 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00191 * 180.02562 * 5 4 2 8 8 C 1.54897 * 129.08482 * 299.94107 * 7 5 4 9 9 C 1.57168 * 77.91198 * 180.16052 * 8 7 5 10 10 C 1.53000 * 129.24765 * 179.19364 * 9 8 7 11 11 F 1.39899 * 109.47265 * 301.28492 * 10 9 8 12 12 F 1.39899 * 109.47455 * 61.28457 * 10 9 8 13 13 F 1.39898 * 109.47428 * 181.28551 * 10 9 8 14 14 C 1.54405 * 129.01553 * 180.02562 * 7 5 4 15 15 C 1.54882 * 83.77577 * 317.35417 * 9 8 7 16 16 C 1.52995 * 109.47343 * 240.00285 * 2 1 3 17 17 C 1.53491 * 114.20857 * 64.99411 * 16 2 1 18 18 N 1.47062 * 87.98637 * 220.14932 * 17 16 2 19 19 C 1.36942 * 136.05672 * 207.07979 * 18 17 16 20 20 H 1.07998 * 119.99727 * 7.56050 * 19 18 17 21 21 C 1.38811 * 119.99866 * 187.55040 * 19 18 17 22 22 N 1.31622 * 120.00072 * 174.37798 * 21 19 18 23 23 Si 1.86796 * 120.00091 * 354.38490 * 21 19 18 24 24 H 1.48503 * 109.47078 * 174.94885 * 23 21 19 25 25 H 1.48498 * 109.47332 * 294.94653 * 23 21 19 26 26 H 1.48499 * 109.47409 * 54.94989 * 23 21 19 27 27 C 1.47064 * 87.88500 * 27.34268 * 18 17 16 28 28 H 1.08997 * 109.47334 * 60.00106 * 1 2 3 29 29 H 1.09008 * 109.46759 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47032 * 299.99525 * 1 2 3 31 31 H 0.96997 * 119.99854 * 95.00695 * 4 2 1 32 32 H 1.08999 * 114.97496 * 291.95214 * 8 7 5 33 33 H 1.09000 * 114.97908 * 67.12871 * 8 7 5 34 34 H 1.09000 * 114.93495 * 293.12954 * 14 7 5 35 35 H 1.09005 * 114.93379 * 68.09747 * 14 7 5 36 36 H 1.09000 * 116.12313 * 290.12515 * 15 9 8 37 37 H 1.09001 * 113.83615 * 154.96117 * 15 9 8 38 38 H 1.09003 * 113.28316 * 198.06633 * 16 2 1 39 39 H 1.09008 * 113.46703 * 105.37266 * 17 16 2 40 40 H 1.08994 * 113.52122 * 334.94341 * 17 16 2 41 41 H 0.97007 * 119.99699 * 354.88690 * 22 21 19 42 42 H 1.09003 * 113.46476 * 87.43619 * 27 18 17 43 43 H 1.09000 * 113.46584 * 217.87658 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8582 1.1584 2.4117 7 6 2.6500 -0.7284 3.5875 8 6 2.0470 -1.9497 4.3252 9 6 3.3195 -1.6364 5.1929 10 6 3.8279 -2.3379 6.4540 11 9 2.8452 -2.2803 7.4480 12 9 4.1158 -3.6750 6.1599 13 9 4.9875 -1.7000 6.9072 14 6 2.8750 -0.1691 5.0090 15 6 4.0036 -1.4457 3.8165 16 6 2.0400 -0.7212 -1.2492 17 6 1.6919 -0.0177 -2.5683 18 7 1.4191 -1.3435 -3.1432 19 6 1.4516 -1.9018 -4.3932 20 1 1.8528 -1.3414 -5.2247 21 6 0.9691 -3.1882 -4.5915 22 7 0.8975 -3.6839 -5.8087 23 14 0.4213 -4.2157 -3.1309 24 1 -0.1618 -5.4928 -3.6150 25 1 1.5904 -4.5035 -2.2617 26 1 -0.6004 -3.4679 -2.3549 27 6 1.0896 -1.8041 -1.7860 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 2.2491 -1.6317 1.1526 32 1 1.0972 -1.7619 4.8261 33 1 2.0729 -2.8845 3.7654 34 1 3.6746 0.5670 5.0919 35 1 1.9659 0.1070 5.5434 36 1 4.1517 -2.3491 3.2249 37 1 4.8733 -0.7893 3.8441 38 1 3.0811 -1.0345 -1.1710 39 1 2.5412 0.4882 -3.0277 40 1 0.8084 0.6172 -2.5027 41 1 1.1113 -3.1260 -6.5729 42 1 0.0470 -1.6404 -1.5133 43 1 1.4256 -2.8201 -1.5789 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970926777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:16 Heat of formation + Delta-G solvation = -45.163500 kcal Electronic energy + Delta-G solvation = -28826.393504 eV Core-core repulsion = 24268.861983 eV Total energy + Delta-G solvation = -4557.531521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -51.08125 -48.63584 -48.62451 -43.19729 -41.06296 -39.69053 -36.22901 -34.50458 -32.07188 -29.43604 -29.04967 -27.02636 -26.96354 -26.91112 -26.37129 -24.98004 -22.70835 -21.65422 -20.75904 -19.81981 -19.42036 -19.40802 -19.39481 -18.66273 -17.40253 -17.26258 -17.08440 -16.07264 -16.02740 -15.65481 -15.61999 -15.59162 -15.23814 -15.22720 -15.10350 -15.05836 -14.83038 -14.78503 -14.78444 -14.32045 -13.75939 -13.24899 -13.21282 -12.98103 -12.86186 -12.73755 -12.70482 -12.62913 -12.29588 -12.07203 -11.99439 -11.83370 -11.52390 -11.46441 -11.27062 -11.04672 -10.90727 -10.75425 -10.12085 -9.16679 -8.60208 -5.45648 1.39560 1.40187 1.51923 1.55057 1.71238 2.05297 2.45624 2.54047 2.58674 2.75063 3.01197 3.02517 3.21116 3.22411 3.35239 3.50200 3.60116 3.63753 3.77297 3.96651 4.13218 4.37840 4.40778 4.48814 4.50613 4.57326 4.64638 4.72307 4.73066 4.79753 4.79923 4.84366 4.84755 4.87354 4.93859 5.02610 5.22737 5.30099 5.44512 5.54180 5.96988 6.54852 6.71877 7.20259 7.34567 8.30059 8.91359 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.018243 B = 0.002648 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.482063 B =10572.586187 C =11472.569355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.165 3.835 3 H 0.087 0.913 4 N -0.703 5.703 5 C 0.580 3.420 6 O -0.571 6.571 7 C -0.162 4.162 8 C -0.063 4.063 9 C -0.222 4.222 10 C 0.524 3.476 11 F -0.180 7.180 12 F -0.178 7.178 13 F -0.181 7.181 14 C -0.067 4.067 15 C -0.064 4.064 16 C -0.107 4.107 17 C 0.124 3.876 18 N -0.663 5.663 19 C -0.291 4.291 20 H 0.045 0.955 21 C -0.090 4.090 22 N -0.974 5.974 23 Si 1.110 2.890 24 H -0.310 1.310 25 H -0.263 1.263 26 H -0.256 1.256 27 C 0.088 3.912 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.415 0.585 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.244 0.756 42 H 0.069 0.931 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.046 4.035 29.252 29.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.060 3.940 3 H 0.105 0.895 4 N -0.354 5.354 5 C 0.367 3.633 6 O -0.450 6.450 7 C -0.166 4.166 8 C -0.100 4.100 9 C -0.224 4.224 10 C 0.470 3.530 11 F -0.162 7.162 12 F -0.160 7.160 13 F -0.163 7.163 14 C -0.105 4.105 15 C -0.101 4.101 16 C -0.127 4.127 17 C -0.002 4.002 18 N -0.391 5.391 19 C -0.419 4.419 20 H 0.063 0.937 21 C -0.281 4.281 22 N -0.619 5.619 23 Si 0.935 3.065 24 H -0.238 1.238 25 H -0.189 1.189 26 H -0.181 1.181 27 C -0.036 4.036 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.252 0.748 32 H 0.116 0.884 33 H 0.132 0.868 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.112 0.888 38 H 0.128 0.872 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.321 3.303 29.492 29.989 hybrid contribution 0.773 1.180 -1.182 1.840 sum 5.094 4.482 28.310 29.112 Atomic orbital electron populations 1.22283 0.94835 1.02805 1.02250 1.20679 0.94286 0.96737 0.82276 0.89451 1.45893 1.66022 1.14832 1.08634 1.18687 0.76302 0.85528 0.82810 1.90719 1.51623 1.17361 1.85251 1.23537 1.00498 0.98767 0.93761 1.24557 0.95052 0.97130 0.93286 1.25163 1.02968 1.00688 0.93557 1.18466 0.74831 0.76417 0.83267 1.93197 1.62539 1.96202 1.64243 1.93206 1.93571 1.35850 1.93332 1.93197 1.50806 1.81903 1.90363 1.23768 1.02343 0.92256 0.92105 1.24080 0.94819 1.01121 0.90099 1.23244 1.00231 0.96808 0.92413 1.22566 0.98452 0.88591 0.90558 1.46018 1.81022 1.09395 1.02680 1.20010 1.36992 1.00166 0.84683 0.93680 1.27214 0.99091 0.97629 1.04158 1.71031 1.53769 1.38925 0.98175 0.83290 0.77400 0.73970 0.71813 1.23803 1.18928 1.18089 1.23325 0.98605 0.97881 0.83778 0.91493 0.91273 0.92349 0.74825 0.88449 0.86774 0.89106 0.88905 0.86794 0.88791 0.87240 0.93678 0.92595 0.94690 0.91350 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 8.22 71.98 0.59 -3.11 16 2 C 0.17 3.69 2.76 44.99 0.12 3.81 16 3 H 0.09 2.11 7.58 -2.39 -0.02 2.09 16 4 N -0.70 -12.45 5.08 -442.54 -2.25 -14.69 16 5 C 0.58 11.41 7.90 87.66 0.69 12.10 16 6 O -0.57 -15.94 16.76 -3.03 -0.05 -15.99 16 7 C -0.16 -2.14 3.36 -63.69 -0.21 -2.35 16 8 C -0.06 -0.59 7.95 31.89 0.25 -0.34 16 9 C -0.22 -2.46 3.03 -62.13 -0.19 -2.65 16 10 C 0.52 7.13 3.63 71.98 0.26 7.39 16 11 F -0.18 -2.73 17.32 44.97 0.78 -1.95 16 12 F -0.18 -2.63 17.32 44.97 0.78 -1.85 16 13 F -0.18 -2.78 17.32 44.97 0.78 -2.00 16 14 C -0.07 -0.84 7.78 30.60 0.24 -0.61 16 15 C -0.06 -0.62 7.84 31.08 0.24 -0.38 16 16 C -0.11 -2.93 4.14 -10.38 -0.04 -2.98 16 17 C 0.12 4.35 8.10 83.17 0.67 5.02 16 18 N -0.66 -30.41 3.69 -738.03 -2.72 -33.13 16 19 C -0.29 -16.73 11.08 84.03 0.93 -15.80 16 20 H 0.05 2.84 8.06 -2.91 -0.02 2.81 16 21 C -0.09 -5.31 5.50 84.86 0.47 -4.85 16 22 N -0.97 -62.89 13.70 21.65 0.30 -62.59 16 23 Si 1.11 50.99 25.16 68.60 1.73 52.71 16 24 H -0.31 -14.87 7.11 99.48 0.71 -14.16 16 25 H -0.26 -10.67 6.51 99.48 0.65 -10.02 16 26 H -0.26 -10.31 6.20 99.48 0.62 -9.70 16 27 C 0.09 3.09 4.83 83.26 0.40 3.49 16 28 H 0.07 1.60 6.77 -2.39 -0.02 1.58 16 29 H 0.07 1.52 6.33 -2.38 -0.02 1.51 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 31 H 0.42 5.41 8.60 -92.71 -0.80 4.61 16 32 H 0.10 0.87 7.91 -2.39 -0.02 0.85 16 33 H 0.11 0.71 7.97 -2.39 -0.02 0.69 16 34 H 0.09 1.14 7.95 -2.39 -0.02 1.12 16 35 H 0.09 1.14 7.91 -2.38 -0.02 1.12 16 36 H 0.11 0.75 7.97 -2.39 -0.02 0.73 16 37 H 0.09 0.89 7.93 -2.39 -0.02 0.87 16 38 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.06 1.83 6.75 -2.39 -0.02 1.82 16 41 H 0.24 15.92 8.73 -92.70 -0.81 15.11 16 42 H 0.07 2.29 4.97 -2.39 -0.01 2.28 16 43 H 0.05 1.80 4.73 -2.39 -0.01 1.79 16 Total: -1.00 -73.85 356.85 3.85 -70.00 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.08 Total: 10.76 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 4.43 Total: -1.25 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -4.67 Total: -110.42 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.05 Total: -15.99 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 2.34 Total: -5.80 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 1.73 Total: 52.71 kcal Total: -73.85 3.85 -70.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970926777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.832 kcal (2) G-P(sol) polarization free energy of solvation -73.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds