Wall clock time and date at job start Tue Mar 31 2020 17:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.00212 * 2 1 4 4 C 1.54325 * 109.88437 * 121.09679 * 2 1 3 5 5 H 1.09000 * 110.72530 * 215.76404 * 4 2 1 6 6 N 1.46507 * 110.71796 * 338.86017 * 4 2 1 7 7 C 1.36929 * 119.99895 * 204.99910 * 6 4 2 8 8 H 1.07997 * 120.00314 * 359.97438 * 7 6 4 9 9 C 1.38812 * 119.99797 * 180.02562 * 7 6 4 10 10 N 1.31616 * 120.00198 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00036 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46977 * 180.02562 * 11 9 7 13 13 H 1.48502 * 109.46780 * 299.99474 * 11 9 7 14 14 H 1.48489 * 109.47362 * 59.99511 * 11 9 7 15 15 C 1.55158 * 102.94330 * 97.22142 * 4 2 1 16 16 C 1.54912 * 101.58013 * 35.50454 * 15 4 2 17 17 N 1.47021 * 109.88141 * 238.90210 * 2 1 3 18 18 C 1.34775 * 125.64819 * 59.49328 * 17 2 1 19 19 O 1.21594 * 120.00341 * 174.49223 * 18 17 2 20 20 C 1.47552 * 120.00014 * 354.49158 * 18 17 2 21 21 C 1.39767 * 120.14078 * 25.74676 * 20 18 17 22 22 C 1.37738 * 119.95127 * 179.97438 * 21 20 18 23 23 C 1.38491 * 120.33110 * 0.06668 * 22 21 20 24 24 C 1.38589 * 120.41415 * 0.02562 * 23 22 21 25 25 C 1.38996 * 119.89645 * 359.57916 * 24 23 22 26 26 O 1.35821 * 120.87076 * 180.62293 * 25 24 23 27 27 C 1.43180 * 116.70947 * 342.80379 * 26 25 24 28 28 C 1.53471 * 108.23491 * 46.29580 * 27 26 25 29 29 O 1.36131 * 119.37913 * 179.61720 * 24 23 22 30 30 H 1.09001 * 109.47076 * 318.06244 * 1 2 3 31 31 H 1.09005 * 109.47240 * 78.05513 * 1 2 3 32 32 H 1.09000 * 109.47525 * 198.05605 * 1 2 3 33 33 H 0.96999 * 119.99656 * 24.99762 * 6 4 2 34 34 H 0.97006 * 120.00418 * 179.97438 * 10 9 7 35 35 H 1.09001 * 111.00483 * 153.58010 * 15 4 2 36 36 H 1.09009 * 111.00583 * 277.43180 * 15 4 2 37 37 H 1.09000 * 110.36325 * 204.15301 * 16 15 4 38 38 H 1.08999 * 110.36487 * 81.82798 * 16 15 4 39 39 H 1.08003 * 120.02056 * 359.95531 * 21 20 18 40 40 H 1.08004 * 119.83775 * 180.08707 * 22 21 20 41 41 H 1.08002 * 119.79143 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.70888 * 165.97976 * 27 26 25 43 43 H 1.09000 * 109.71047 * 286.60931 * 27 26 25 44 44 H 1.08997 * 109.70450 * 60.02204 * 28 27 26 45 45 H 1.08995 * 109.70630 * 180.64532 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.9639 -0.2814 1.6201 6 7 1.0292 -0.8026 2.2875 7 6 1.3953 -0.9388 3.5999 8 1 2.4400 -1.0075 3.8648 9 6 0.4235 -0.9896 4.5898 10 7 -0.8498 -0.9064 4.2670 11 14 0.9229 -1.1746 6.3804 12 1 -0.2928 -1.2034 7.2328 13 1 1.6793 -2.4406 6.5549 14 1 1.7790 -0.0279 6.7766 15 6 2.3518 -2.1695 0.6924 16 6 2.8567 -1.8498 -0.7368 17 7 2.0299 -0.7141 -1.1839 18 6 1.7742 -0.3853 -2.4657 19 8 2.3220 -0.9876 -3.3688 20 6 0.8295 0.7056 -2.7731 21 6 0.6117 1.7278 -1.8450 22 6 -0.2707 2.7445 -2.1363 23 6 -0.9460 2.7596 -3.3453 24 6 -0.7425 1.7523 -4.2752 25 6 0.1511 0.7243 -3.9986 26 8 0.3751 -0.2660 -4.9007 27 6 -0.5938 -0.4174 -5.9440 28 6 -0.9039 0.9722 -6.5168 29 8 -1.4233 1.7838 -5.4536 30 1 -0.3633 0.7645 0.6868 31 1 -0.3634 0.2127 -1.0055 32 1 -0.3634 -0.9770 0.3185 33 1 0.0908 -0.7413 2.0496 34 1 -1.5289 -0.9423 4.9587 35 1 3.1269 -2.6619 1.2796 36 1 1.4450 -2.7737 0.6603 37 1 2.7086 -2.7081 -1.3922 38 1 3.9090 -1.5668 -0.7128 39 1 1.1347 1.7201 -0.9001 40 1 -0.4366 3.5342 -1.4183 41 1 -1.6363 3.5608 -3.5644 42 1 -0.1914 -1.0573 -6.7293 43 1 -1.5040 -0.8596 -5.5390 44 1 0.0074 1.4164 -6.9171 45 1 -1.6494 0.8860 -7.3072 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986334116.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:49 Heat of formation + Delta-G solvation = -26.074384 kcal Electronic energy + Delta-G solvation = -29541.793406 eV Core-core repulsion = 25526.946391 eV Total energy + Delta-G solvation = -4014.847015 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.54694 -40.14990 -37.72805 -37.62044 -37.04403 -34.11470 -32.35296 -31.49100 -31.26545 -29.97547 -28.86923 -28.43682 -25.36657 -24.99377 -24.26852 -23.48782 -21.98959 -21.19226 -19.90852 -19.55227 -18.37852 -17.98034 -17.43636 -17.03185 -16.27895 -15.74146 -15.51054 -15.36874 -15.02961 -14.88755 -14.53772 -14.40371 -14.24687 -13.97669 -13.63822 -13.51197 -13.20441 -12.79881 -12.53411 -12.34659 -11.99592 -11.98503 -11.80603 -11.59967 -11.32806 -11.25914 -11.04168 -10.86584 -10.81192 -10.76473 -10.42382 -10.24703 -10.07338 -9.75183 -9.55142 -8.97513 -8.69998 -8.32657 -8.15795 -7.06230 -5.84975 -3.14864 0.79975 1.21354 2.78454 2.97594 3.05431 3.16536 3.39802 3.45039 3.45464 3.74728 3.99339 4.37756 4.52654 4.56334 4.65127 4.74293 4.85499 4.95638 5.02020 5.13809 5.20628 5.23156 5.29594 5.41672 5.49746 5.56295 5.58075 5.66006 5.78857 5.90130 5.96489 6.02124 6.14408 6.18183 6.28064 6.30284 6.40326 6.45469 6.57176 6.62258 6.71126 6.74411 6.93276 7.23843 7.63141 7.78134 8.33195 8.40574 9.45287 9.99228 10.34437 11.37205 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.003155 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.696878 B = 8873.818252 C = 9719.957008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.111 3.889 3 H 0.080 0.920 4 C 0.175 3.825 5 H 0.068 0.932 6 N -0.716 5.716 7 C -0.246 4.246 8 H 0.071 0.929 9 C -0.009 4.009 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.291 1.291 13 H -0.286 1.286 14 H -0.285 1.285 15 C -0.154 4.154 16 C 0.109 3.891 17 N -0.605 5.605 18 C 0.577 3.423 19 O -0.531 6.531 20 C -0.131 4.131 21 C -0.085 4.085 22 C -0.131 4.131 23 C -0.088 4.088 24 C 0.029 3.971 25 C 0.106 3.894 26 O -0.277 6.277 27 C 0.015 3.985 28 C 0.020 3.980 29 O -0.307 6.307 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.391 0.609 34 H 0.257 0.743 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.160 0.840 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.122 0.878 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.191 5.762 -19.090 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.007 3.993 3 H 0.098 0.902 4 C 0.063 3.937 5 H 0.086 0.914 6 N -0.359 5.359 7 C -0.377 4.377 8 H 0.089 0.911 9 C -0.205 4.205 10 N -0.579 5.579 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.196 4.196 16 C -0.014 4.014 17 N -0.339 5.339 18 C 0.366 3.634 19 O -0.408 6.408 20 C -0.135 4.135 21 C -0.102 4.102 22 C -0.149 4.149 23 C -0.107 4.107 24 C -0.015 4.015 25 C 0.058 3.942 26 O -0.189 6.189 27 C -0.061 4.061 28 C -0.055 4.055 29 O -0.222 6.222 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.228 0.772 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.177 0.823 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.140 0.860 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.506 5.405 -19.518 20.259 hybrid contribution -0.254 -0.240 0.748 0.826 sum 0.252 5.165 -18.770 19.469 Atomic orbital electron populations 1.22495 0.94378 1.04073 1.02172 1.22304 0.95388 0.95658 0.85928 0.90221 1.21194 0.93273 0.92145 0.87115 0.91372 1.42618 1.04419 1.87143 1.01733 1.19199 0.92563 1.42853 0.83063 0.91081 1.24740 0.95222 1.02526 0.98051 1.69641 0.98870 1.56863 1.32486 0.86262 0.77032 0.77961 0.84862 1.21706 1.21238 1.21193 1.23574 1.01752 1.01066 0.93182 1.22245 0.94223 0.88602 0.96308 1.48434 1.50237 1.30619 1.04590 1.17539 0.81453 0.83018 0.81363 1.90778 1.51259 1.53935 1.44863 1.19222 1.02751 0.99026 0.92512 1.22123 0.96959 0.91969 0.99192 1.20880 0.97728 0.99680 0.96617 1.20604 1.00579 0.96532 0.92970 1.18717 0.98354 0.95868 0.88595 1.18824 0.97244 0.88286 0.89801 1.86562 1.46229 1.49135 1.37008 1.23709 0.93746 0.97594 0.91064 1.23680 1.01724 0.90910 0.89220 1.86390 1.50835 1.65920 1.19059 0.90400 0.91765 0.91220 0.77169 0.93322 0.90464 0.90768 0.91172 0.91770 0.82316 0.84268 0.84587 0.85992 0.90422 0.90352 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 6.70 37.15 0.25 -2.57 16 2 C 0.11 1.76 2.74 -66.96 -0.18 1.58 16 3 H 0.08 1.14 5.80 -51.93 -0.30 0.84 16 4 C 0.17 3.19 3.44 -66.09 -0.23 2.96 16 5 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 6 N -0.72 -16.43 4.99 -51.65 -0.26 -16.69 16 7 C -0.25 -6.38 9.96 -15.06 -0.15 -6.53 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 10 N -0.93 -26.72 13.06 55.49 0.72 -26.00 16 11 Si 0.91 21.47 29.55 -169.99 -5.02 16.44 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 15 C -0.15 -2.60 6.77 -24.58 -0.17 -2.77 16 16 C 0.11 1.69 6.89 -2.53 -0.02 1.68 16 17 N -0.60 -9.88 3.08 -164.23 -0.51 -10.39 16 18 C 0.58 10.16 7.44 -12.46 -0.09 10.07 16 19 O -0.53 -10.78 15.84 -15.22 -0.24 -11.02 16 20 C -0.13 -2.03 4.62 -104.84 -0.48 -2.52 16 21 C -0.08 -1.10 6.37 -39.19 -0.25 -1.35 16 22 C -0.13 -1.46 10.02 -39.67 -0.40 -1.85 16 23 C -0.09 -1.00 9.95 -39.36 -0.39 -1.39 16 24 C 0.03 0.38 6.49 -39.17 -0.25 0.13 16 25 C 0.11 1.59 6.48 -38.61 -0.25 1.34 16 26 O -0.28 -4.15 8.73 -46.56 -0.41 -4.56 16 27 C 0.01 0.14 7.25 37.40 0.27 0.41 16 28 C 0.02 0.17 7.28 37.40 0.27 0.44 16 29 O -0.31 -3.57 10.43 -32.98 -0.34 -3.91 16 30 H 0.08 1.28 7.92 -51.93 -0.41 0.87 16 31 H 0.06 0.99 4.37 -51.93 -0.23 0.76 16 32 H 0.07 1.29 6.95 -51.93 -0.36 0.92 16 33 H 0.39 9.43 5.05 -40.82 -0.21 9.22 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.37 8.14 -51.92 -0.42 0.94 16 37 H 0.07 1.11 8.09 -51.93 -0.42 0.69 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.16 2.00 3.59 -52.48 -0.19 1.81 16 40 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 41 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -32.76 354.01 -8.77 -41.53 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.89 Total: 9.97 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -2.17 Total: -0.71 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.04 Total: -53.08 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.99 Total: -19.50 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.76 -8.77 -41.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986334116.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.460 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds