Wall clock time and date at job start Tue Mar 31 2020 17:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.00212 * 2 1 4 4 C 1.54325 * 109.88437 * 121.09679 * 2 1 3 5 5 H 1.09000 * 110.72530 * 215.76404 * 4 2 1 6 6 N 1.46507 * 110.71796 * 338.86017 * 4 2 1 7 7 C 1.36929 * 119.99895 * 204.99910 * 6 4 2 8 8 H 1.07997 * 120.00314 * 359.97438 * 7 6 4 9 9 C 1.38812 * 119.99797 * 180.02562 * 7 6 4 10 10 N 1.31616 * 120.00198 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00036 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46977 * 180.02562 * 11 9 7 13 13 H 1.48502 * 109.46780 * 299.99474 * 11 9 7 14 14 H 1.48489 * 109.47362 * 59.99511 * 11 9 7 15 15 C 1.55158 * 102.94330 * 97.22142 * 4 2 1 16 16 C 1.54912 * 101.58013 * 35.50454 * 15 4 2 17 17 N 1.47021 * 109.88141 * 238.90210 * 2 1 3 18 18 C 1.34775 * 125.64819 * 59.49328 * 17 2 1 19 19 O 1.21594 * 120.00341 * 174.49223 * 18 17 2 20 20 C 1.47552 * 120.00014 * 354.49158 * 18 17 2 21 21 C 1.39767 * 120.14078 * 25.74676 * 20 18 17 22 22 C 1.37738 * 119.95127 * 179.97438 * 21 20 18 23 23 C 1.38491 * 120.33110 * 0.06668 * 22 21 20 24 24 C 1.38589 * 120.41415 * 0.02562 * 23 22 21 25 25 C 1.38996 * 119.89645 * 359.57916 * 24 23 22 26 26 O 1.35821 * 120.87076 * 180.62293 * 25 24 23 27 27 C 1.43180 * 116.70947 * 342.80379 * 26 25 24 28 28 C 1.53471 * 108.23491 * 46.29580 * 27 26 25 29 29 O 1.36131 * 119.37913 * 179.61720 * 24 23 22 30 30 H 1.09001 * 109.47076 * 318.06244 * 1 2 3 31 31 H 1.09005 * 109.47240 * 78.05513 * 1 2 3 32 32 H 1.09000 * 109.47525 * 198.05605 * 1 2 3 33 33 H 0.96999 * 119.99656 * 24.99762 * 6 4 2 34 34 H 0.97006 * 120.00418 * 179.97438 * 10 9 7 35 35 H 1.09001 * 111.00483 * 153.58010 * 15 4 2 36 36 H 1.09009 * 111.00583 * 277.43180 * 15 4 2 37 37 H 1.09000 * 110.36325 * 204.15301 * 16 15 4 38 38 H 1.08999 * 110.36487 * 81.82798 * 16 15 4 39 39 H 1.08003 * 120.02056 * 359.95531 * 21 20 18 40 40 H 1.08004 * 119.83775 * 180.08707 * 22 21 20 41 41 H 1.08002 * 119.79143 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.70888 * 165.97976 * 27 26 25 43 43 H 1.09000 * 109.71047 * 286.60931 * 27 26 25 44 44 H 1.08997 * 109.70450 * 60.02204 * 28 27 26 45 45 H 1.08995 * 109.70630 * 180.64532 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.9639 -0.2814 1.6201 6 7 1.0292 -0.8026 2.2875 7 6 1.3953 -0.9388 3.5999 8 1 2.4400 -1.0075 3.8648 9 6 0.4235 -0.9896 4.5898 10 7 -0.8498 -0.9064 4.2670 11 14 0.9229 -1.1746 6.3804 12 1 -0.2928 -1.2034 7.2328 13 1 1.6793 -2.4406 6.5549 14 1 1.7790 -0.0279 6.7766 15 6 2.3518 -2.1695 0.6924 16 6 2.8567 -1.8498 -0.7368 17 7 2.0299 -0.7141 -1.1839 18 6 1.7742 -0.3853 -2.4657 19 8 2.3220 -0.9876 -3.3688 20 6 0.8295 0.7056 -2.7731 21 6 0.6117 1.7278 -1.8450 22 6 -0.2707 2.7445 -2.1363 23 6 -0.9460 2.7596 -3.3453 24 6 -0.7425 1.7523 -4.2752 25 6 0.1511 0.7243 -3.9986 26 8 0.3751 -0.2660 -4.9007 27 6 -0.5938 -0.4174 -5.9440 28 6 -0.9039 0.9722 -6.5168 29 8 -1.4233 1.7838 -5.4536 30 1 -0.3633 0.7645 0.6868 31 1 -0.3634 0.2127 -1.0055 32 1 -0.3634 -0.9770 0.3185 33 1 0.0908 -0.7413 2.0496 34 1 -1.5289 -0.9423 4.9587 35 1 3.1269 -2.6619 1.2796 36 1 1.4450 -2.7737 0.6603 37 1 2.7086 -2.7081 -1.3922 38 1 3.9090 -1.5668 -0.7128 39 1 1.1347 1.7201 -0.9001 40 1 -0.4366 3.5342 -1.4183 41 1 -1.6363 3.5608 -3.5644 42 1 -0.1914 -1.0573 -6.7293 43 1 -1.5040 -0.8596 -5.5390 44 1 0.0074 1.4164 -6.9171 45 1 -1.6494 0.8860 -7.3072 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986334116.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:48 Heat of formation + Delta-G solvation = -46.279627 kcal Electronic energy + Delta-G solvation = -29542.669571 eV Core-core repulsion = 25526.946391 eV Total energy + Delta-G solvation = -4015.723180 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.52503 -41.37223 -39.02157 -38.61580 -38.10095 -35.86455 -33.57664 -33.18016 -32.14311 -31.12356 -30.45647 -29.38654 -26.87292 -25.91724 -25.51501 -25.14458 -23.19970 -22.06891 -21.30855 -20.75680 -19.47172 -19.39088 -18.76084 -18.06409 -17.42705 -17.02066 -16.77028 -16.51578 -16.29545 -15.99321 -15.83210 -15.55241 -15.33544 -15.24779 -14.92000 -14.77311 -14.57191 -13.96371 -13.91068 -13.54877 -13.28284 -13.11900 -13.09861 -12.98574 -12.82875 -12.73831 -12.49664 -12.16193 -12.07690 -12.00449 -11.74989 -11.67953 -11.56850 -11.49692 -10.91013 -10.85761 -9.85019 -9.53800 -9.11538 -8.96785 -7.89547 -5.17790 -0.23229 0.25916 1.53343 1.54606 1.60394 1.68413 1.89863 2.02541 2.25169 2.60464 2.69899 3.14507 3.39343 3.43409 3.65199 3.70192 3.75230 3.90031 3.93017 4.01134 4.13383 4.15543 4.21688 4.25209 4.37474 4.42643 4.50498 4.55959 4.57365 4.67059 4.73433 4.79033 4.85542 4.96011 5.02610 5.09441 5.17310 5.26731 5.34422 5.36571 5.47893 5.58689 5.59579 5.85573 6.30787 6.32377 6.46606 7.07888 7.40501 8.12866 8.37640 9.33351 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.003155 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.696878 B = 8873.818252 C = 9719.957008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.121 3.879 3 H 0.105 0.895 4 C 0.168 3.832 5 H 0.078 0.922 6 N -0.726 5.726 7 C -0.239 4.239 8 H 0.080 0.920 9 C -0.070 4.070 10 N -0.967 5.967 11 Si 0.968 3.032 12 H -0.301 1.301 13 H -0.282 1.282 14 H -0.277 1.277 15 C -0.144 4.144 16 C 0.112 3.888 17 N -0.604 5.604 18 C 0.574 3.426 19 O -0.567 6.567 20 C -0.158 4.158 21 C -0.088 4.088 22 C -0.123 4.123 23 C -0.082 4.082 24 C 0.023 3.977 25 C 0.087 3.913 26 O -0.310 6.310 27 C 0.005 3.995 28 C 0.020 3.980 29 O -0.315 6.315 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.383 0.617 34 H 0.250 0.750 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.162 0.838 40 H 0.171 0.829 41 H 0.164 0.836 42 H 0.146 0.854 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.462 7.295 -19.810 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.017 3.983 3 H 0.122 0.878 4 C 0.057 3.943 5 H 0.096 0.904 6 N -0.369 5.369 7 C -0.371 4.371 8 H 0.098 0.902 9 C -0.263 4.263 10 N -0.617 5.617 11 Si 0.798 3.202 12 H -0.227 1.227 13 H -0.208 1.208 14 H -0.203 1.203 15 C -0.185 4.185 16 C -0.010 4.010 17 N -0.338 5.338 18 C 0.365 3.635 19 O -0.447 6.447 20 C -0.162 4.162 21 C -0.106 4.106 22 C -0.141 4.141 23 C -0.101 4.101 24 C -0.022 4.022 25 C 0.040 3.960 26 O -0.223 6.223 27 C -0.069 4.069 28 C -0.055 4.055 29 O -0.230 6.230 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.219 0.781 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.179 0.821 40 H 0.188 0.812 41 H 0.181 0.819 42 H 0.164 0.836 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.818 6.938 -20.258 21.429 hybrid contribution -0.332 -0.728 0.821 1.146 sum 0.486 6.211 -19.437 20.411 Atomic orbital electron populations 1.22366 0.94674 1.02325 1.02524 1.22223 0.95012 0.96411 0.84622 0.87792 1.21395 0.92553 0.93273 0.87048 0.90419 1.42748 1.05015 1.87202 1.01885 1.19597 0.92820 1.40382 0.84303 0.90246 1.25455 0.95334 1.03812 1.01665 1.69791 0.99707 1.59196 1.33040 0.85296 0.76249 0.78096 0.80583 1.22720 1.20826 1.20291 1.23396 1.01172 0.99844 0.94123 1.22250 0.95112 0.88531 0.95115 1.48466 1.50118 1.30648 1.04524 1.17940 0.81323 0.83221 0.81036 1.90741 1.52744 1.55474 1.45740 1.19228 1.03602 0.99467 0.93899 1.22160 0.97564 0.92065 0.98769 1.21242 0.96302 0.99478 0.97035 1.21012 1.00223 0.96461 0.92377 1.18928 0.97958 0.95725 0.89571 1.19051 0.97988 0.89081 0.89882 1.86500 1.48135 1.49556 1.38143 1.24048 0.93178 0.99124 0.90598 1.23963 1.03168 0.89413 0.88934 1.86373 1.50977 1.66500 1.19122 0.90550 0.90768 0.93981 0.78114 0.94125 0.89459 0.92847 0.91566 0.89850 0.82124 0.81173 0.81866 0.83597 0.90397 0.90038 0.82331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.23 6.70 71.98 0.48 -4.75 16 2 C 0.12 3.73 2.74 45.34 0.12 3.85 16 3 H 0.10 2.77 5.80 -2.39 -0.01 2.75 16 4 C 0.17 5.98 3.44 46.18 0.16 6.13 16 5 H 0.08 2.66 8.09 -2.39 -0.02 2.64 16 6 N -0.73 -33.23 4.99 -317.32 -1.58 -34.81 16 7 C -0.24 -12.27 9.96 84.03 0.84 -11.43 16 8 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 9 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 10 N -0.97 -56.30 13.06 21.65 0.28 -56.02 16 11 Si 0.97 44.10 29.55 68.60 2.03 46.13 16 12 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 14 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 15 C -0.14 -4.80 6.77 31.99 0.22 -4.58 16 16 C 0.11 3.43 6.89 86.86 0.60 4.03 16 17 N -0.60 -19.53 3.08 -791.76 -2.44 -21.97 16 18 C 0.57 20.35 7.44 86.70 0.65 20.99 16 19 O -0.57 -23.51 15.84 15.59 0.25 -23.27 16 20 C -0.16 -4.86 4.62 -20.00 -0.09 -4.95 16 21 C -0.09 -2.16 6.37 22.52 0.14 -2.02 16 22 C -0.12 -2.40 10.02 22.21 0.22 -2.18 16 23 C -0.08 -1.65 9.95 22.41 0.22 -1.43 16 24 C 0.02 0.57 6.49 22.54 0.15 0.72 16 25 C 0.09 2.60 6.48 22.90 0.15 2.75 16 26 O -0.31 -9.39 8.73 -65.36 -0.57 -9.96 16 27 C 0.01 0.10 7.25 72.14 0.52 0.62 16 28 C 0.02 0.29 7.28 72.14 0.52 0.82 16 29 O -0.31 -6.71 10.43 -82.79 -0.86 -7.57 16 30 H 0.08 2.49 7.92 -2.39 -0.02 2.47 16 31 H 0.07 2.27 4.37 -2.38 -0.01 2.26 16 32 H 0.04 1.59 6.95 -2.39 -0.02 1.57 16 33 H 0.38 18.74 5.05 -92.71 -0.47 18.27 16 34 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 35 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.07 2.09 8.09 -2.39 -0.02 2.07 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.16 3.76 3.59 -2.91 -0.01 3.75 16 40 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 41 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 42 H 0.15 1.84 8.14 -2.39 -0.02 1.83 16 43 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.16 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -71.79 354.01 3.04 -68.75 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: 0.57 Total: 33.48 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 5.37 Total: 5.24 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -3.74 Total: -112.80 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -1.19 Total: -40.79 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -71.79 3.04 -68.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986334116.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.473 kcal (2) G-P(sol) polarization free energy of solvation -71.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds