Wall clock time and date at job start Tue Mar 31 2020 17:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.00179 * 2 1 4 4 C 1.54319 * 109.77676 * 121.15581 * 2 1 3 5 5 H 1.09004 * 110.92403 * 23.47028 * 4 2 1 6 6 N 1.46499 * 110.58868 * 260.14879 * 4 2 1 7 7 C 1.36939 * 119.99652 * 160.19431 * 6 4 2 8 8 H 1.07995 * 120.00367 * 359.97438 * 7 6 4 9 9 C 1.38810 * 119.99739 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00543 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00247 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46808 * 59.99941 * 11 9 7 13 13 H 1.48498 * 109.47524 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47188 * 300.00431 * 11 9 7 15 15 C 1.55149 * 102.86538 * 141.88398 * 4 2 1 16 16 C 1.54906 * 101.58311 * 324.30698 * 15 4 2 17 17 N 1.47023 * 109.88286 * 238.90534 * 2 1 3 18 18 C 1.34770 * 125.64955 * 61.67603 * 17 2 1 19 19 O 1.21588 * 119.99705 * 5.04583 * 18 17 2 20 20 C 1.47542 * 120.00504 * 185.03531 * 18 17 2 21 21 C 1.39772 * 120.13518 * 36.68915 * 20 18 17 22 22 C 1.37757 * 119.95027 * 179.97438 * 21 20 18 23 23 C 1.38485 * 120.32779 * 0.06473 * 22 21 20 24 24 C 1.38594 * 120.41416 * 0.02562 * 23 22 21 25 25 C 1.38990 * 119.90102 * 359.87012 * 24 23 22 26 26 O 1.35821 * 120.86791 * 180.23318 * 25 24 23 27 27 C 1.43174 * 116.72114 * 342.64149 * 26 25 24 28 28 C 1.53474 * 108.23239 * 46.25413 * 27 26 25 29 29 O 1.36137 * 119.37523 * 179.64517 * 24 23 22 30 30 H 1.09002 * 109.47013 * 179.64456 * 1 2 3 31 31 H 1.09004 * 109.46706 * 299.64036 * 1 2 3 32 32 H 1.08999 * 109.46769 * 59.64304 * 1 2 3 33 33 H 0.96996 * 120.00015 * 340.18539 * 6 4 2 34 34 H 0.96996 * 120.00540 * 180.02562 * 10 9 7 35 35 H 1.08999 * 111.00448 * 206.23117 * 15 4 2 36 36 H 1.09001 * 111.03639 * 82.39402 * 15 4 2 37 37 H 1.09000 * 110.36481 * 278.17081 * 16 15 4 38 38 H 1.08997 * 110.37112 * 155.84733 * 16 15 4 39 39 H 1.07997 * 120.02753 * 0.02562 * 21 20 18 40 40 H 1.07995 * 119.83285 * 180.33658 * 22 21 20 41 41 H 1.07996 * 119.79222 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.71123 * 165.94232 * 27 26 25 43 43 H 1.09001 * 109.71315 * 286.57071 * 27 26 25 44 44 H 1.09000 * 109.70351 * 60.00868 * 28 27 26 45 45 H 1.09000 * 109.70841 * 180.58094 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0522 -0.7513 1.2427 5 1 1.3050 -1.4513 1.6168 6 7 2.4473 0.1953 2.2887 7 6 2.5496 -0.2240 3.5883 8 1 2.3387 -1.2522 3.8422 9 6 2.9245 0.6728 4.5793 10 7 3.1821 1.9259 4.2699 11 14 3.0634 0.1012 6.3523 12 1 4.0764 -0.9807 6.4456 13 1 3.4773 1.2413 7.2091 14 1 1.7477 -0.4117 6.8116 15 6 3.2889 -1.5101 0.6933 16 6 2.8192 -1.8762 -0.7367 17 7 2.0300 -0.7140 -1.1839 18 6 1.8086 -0.3613 -2.4656 19 8 1.2227 0.6736 -2.7187 20 6 2.2772 -1.2307 -3.5617 21 6 2.2322 -2.6208 -3.4229 22 6 2.6703 -3.4289 -4.4489 23 6 3.1572 -2.8712 -5.6192 24 6 3.2100 -1.4946 -5.7715 25 6 2.7695 -0.6667 -4.7457 26 8 2.8079 0.6847 -4.8758 27 6 3.6493 1.2083 -5.9091 28 6 3.3923 0.4045 -7.1910 29 8 3.6994 -0.9690 -6.9280 30 1 -0.3633 -1.0277 -0.0064 31 1 -0.3633 0.5083 0.8932 32 1 -0.3633 0.5194 -0.8868 33 1 2.6365 1.1188 2.0607 34 1 3.4444 2.5524 4.9624 35 1 3.4897 -2.4065 1.2801 36 1 4.1643 -0.8614 0.6629 37 1 2.1972 -2.7711 -0.7142 38 1 3.6777 -2.0264 -1.3913 39 1 1.8536 -3.0610 -2.5123 40 1 2.6296 -4.5028 -4.3417 41 1 3.4988 -3.5129 -6.4179 42 1 3.4118 2.2584 -6.0798 43 1 4.6948 1.1102 -5.6170 44 1 2.3455 0.4983 -7.4800 45 1 4.0297 0.7774 -7.9927 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986334124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:57 Heat of formation + Delta-G solvation = -53.643523 kcal Electronic energy + Delta-G solvation = -28976.745006 eV Core-core repulsion = 24960.702504 eV Total energy + Delta-G solvation = -4016.042502 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.57743 -39.94509 -37.87975 -37.61037 -36.92016 -34.11820 -32.08225 -31.44777 -31.00350 -30.58873 -28.92084 -28.70070 -25.28356 -25.04461 -24.34225 -23.06714 -22.10748 -21.22906 -20.29324 -19.44025 -18.51735 -17.79760 -17.24491 -17.21648 -16.36887 -16.04858 -15.54944 -15.33387 -15.06523 -14.85910 -14.64276 -14.48497 -14.15742 -13.69688 -13.57458 -13.42191 -13.27875 -12.95372 -12.73536 -12.38376 -12.19631 -12.05186 -11.87302 -11.57669 -11.36665 -11.36118 -11.10729 -11.01720 -10.88373 -10.80876 -10.54619 -10.26801 -10.01624 -9.75617 -9.54952 -8.94039 -8.87083 -8.37932 -8.28508 -7.02140 -5.80447 -3.10980 0.71094 1.05955 2.68667 2.90435 2.97556 3.12410 3.41952 3.46568 3.47732 3.60067 3.91182 4.30766 4.50362 4.55646 4.58673 4.65407 4.78772 4.87105 5.00858 5.07871 5.14101 5.19605 5.24257 5.38486 5.45238 5.50031 5.61547 5.67587 5.78772 5.81869 5.82409 5.98158 6.10875 6.12605 6.15565 6.30589 6.33481 6.48276 6.60225 6.61079 6.64107 6.78807 6.95133 7.13426 7.65850 7.79561 8.36523 8.41437 9.48182 10.03051 10.37801 11.41687 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022223 B = 0.002725 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.632130 B =10271.142875 C =10688.269123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.129 3.871 3 H 0.078 0.922 4 C 0.177 3.823 5 H 0.065 0.935 6 N -0.715 5.715 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.156 4.156 16 C 0.097 3.903 17 N -0.605 5.605 18 C 0.575 3.425 19 O -0.523 6.523 20 C -0.121 4.121 21 C -0.084 4.084 22 C -0.124 4.124 23 C -0.095 4.095 24 C 0.038 3.962 25 C 0.103 3.897 26 O -0.280 6.280 27 C 0.015 3.985 28 C 0.020 3.980 29 O -0.307 6.307 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.386 0.614 34 H 0.257 0.743 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.124 0.876 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.639 -9.515 -23.295 25.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.025 3.975 3 H 0.096 0.904 4 C 0.065 3.935 5 H 0.083 0.917 6 N -0.356 5.356 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.198 4.198 16 C -0.026 4.026 17 N -0.339 5.339 18 C 0.363 3.637 19 O -0.400 6.400 20 C -0.125 4.125 21 C -0.103 4.103 22 C -0.142 4.142 23 C -0.113 4.113 24 C -0.007 4.007 25 C 0.055 3.945 26 O -0.192 6.192 27 C -0.060 4.060 28 C -0.055 4.055 29 O -0.222 6.222 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.220 0.780 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.142 0.858 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.313 -8.901 -23.338 24.980 hybrid contribution 0.374 0.171 0.730 0.838 sum 0.687 -8.730 -22.608 24.245 Atomic orbital electron populations 1.22044 0.94888 1.01602 1.02679 1.21897 0.94349 0.97014 0.84215 0.90387 1.21244 0.93508 0.91610 0.87090 0.91666 1.42348 1.81171 1.08957 1.03076 1.19153 1.39449 0.95014 0.83836 0.91037 1.24765 1.02125 0.95625 0.98137 1.69655 1.52565 1.02902 1.32657 0.86258 0.77816 0.77269 0.84743 1.21222 1.21704 1.21191 1.23587 1.01454 1.01773 0.92946 1.22523 0.94554 0.88316 0.97217 1.48425 1.51916 1.28900 1.04623 1.17530 0.80003 0.85040 0.81091 1.90791 1.41932 1.24133 1.83120 1.19308 1.06429 0.93873 0.92874 1.21344 0.98148 0.90987 0.99819 1.20837 1.00417 1.00300 0.92682 1.20563 1.00552 0.91126 0.99103 1.18757 1.02987 0.93004 0.85929 1.18835 0.99715 0.83288 0.92636 1.86541 1.63107 1.16723 1.52866 1.23728 0.95473 0.99841 0.86981 1.23659 1.03219 0.80300 0.98351 1.86311 1.72152 1.27084 1.36610 0.93023 0.91031 0.92179 0.77960 0.93327 0.90513 0.90646 0.91643 0.91162 0.84053 0.84410 0.84525 0.85770 0.90315 0.90312 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.10 37.16 0.34 -2.29 16 2 C 0.13 2.35 3.18 -66.95 -0.21 2.13 16 3 H 0.08 1.62 7.68 -51.93 -0.40 1.22 16 4 C 0.18 3.40 3.11 -66.10 -0.21 3.19 16 5 H 0.07 1.24 7.84 -51.93 -0.41 0.83 16 6 N -0.72 -17.43 5.25 -51.66 -0.27 -17.70 16 7 C -0.24 -6.52 9.98 -15.06 -0.15 -6.67 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 11 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 C -0.16 -2.58 6.76 -24.59 -0.17 -2.74 16 16 C 0.10 1.31 5.21 -2.53 -0.01 1.30 16 17 N -0.60 -9.87 3.06 -164.23 -0.50 -10.37 16 18 C 0.58 9.99 7.09 -12.47 -0.09 9.90 16 19 O -0.52 -10.85 15.19 -12.60 -0.19 -11.05 16 20 C -0.12 -1.74 5.41 -104.84 -0.57 -2.31 16 21 C -0.08 -0.92 8.18 -39.18 -0.32 -1.24 16 22 C -0.12 -1.10 10.02 -39.67 -0.40 -1.49 16 23 C -0.09 -0.91 9.95 -39.36 -0.39 -1.30 16 24 C 0.04 0.45 6.49 -39.17 -0.25 0.20 16 25 C 0.10 1.44 6.48 -38.61 -0.25 1.19 16 26 O -0.28 -4.09 9.02 -45.26 -0.41 -4.50 16 27 C 0.02 0.14 7.26 37.40 0.27 0.41 16 28 C 0.02 0.16 7.26 37.40 0.27 0.43 16 29 O -0.31 -3.26 10.42 -33.00 -0.34 -3.60 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.07 7.06 -51.93 -0.37 0.70 16 33 H 0.39 10.21 7.50 -40.82 -0.31 9.90 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.07 0.73 6.92 -51.93 -0.36 0.37 16 38 H 0.07 0.86 7.28 -51.93 -0.38 0.49 16 39 H 0.14 1.34 5.78 -52.49 -0.30 1.03 16 40 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 365.30 15.07 5.51 5.51 Total: -1.00 -34.01 365.30 -9.04 -43.05 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.29 Total: 8.45 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.23 Total: 0.33 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.05 Total: -55.09 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.94 Total: -19.15 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.01 -9.04 -43.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986334124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.594 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds