Wall clock time and date at job start Tue Mar 31 2020 17:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.00179 * 2 1 4 4 C 1.54319 * 109.77676 * 121.15581 * 2 1 3 5 5 H 1.09004 * 110.92403 * 23.47028 * 4 2 1 6 6 N 1.46499 * 110.58868 * 260.14879 * 4 2 1 7 7 C 1.36939 * 119.99652 * 160.19431 * 6 4 2 8 8 H 1.07995 * 120.00367 * 359.97438 * 7 6 4 9 9 C 1.38810 * 119.99739 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00543 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00247 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46808 * 59.99941 * 11 9 7 13 13 H 1.48498 * 109.47524 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47188 * 300.00431 * 11 9 7 15 15 C 1.55149 * 102.86538 * 141.88398 * 4 2 1 16 16 C 1.54906 * 101.58311 * 324.30698 * 15 4 2 17 17 N 1.47023 * 109.88286 * 238.90534 * 2 1 3 18 18 C 1.34770 * 125.64955 * 61.67603 * 17 2 1 19 19 O 1.21588 * 119.99705 * 5.04583 * 18 17 2 20 20 C 1.47542 * 120.00504 * 185.03531 * 18 17 2 21 21 C 1.39772 * 120.13518 * 36.68915 * 20 18 17 22 22 C 1.37757 * 119.95027 * 179.97438 * 21 20 18 23 23 C 1.38485 * 120.32779 * 0.06473 * 22 21 20 24 24 C 1.38594 * 120.41416 * 0.02562 * 23 22 21 25 25 C 1.38990 * 119.90102 * 359.87012 * 24 23 22 26 26 O 1.35821 * 120.86791 * 180.23318 * 25 24 23 27 27 C 1.43174 * 116.72114 * 342.64149 * 26 25 24 28 28 C 1.53474 * 108.23239 * 46.25413 * 27 26 25 29 29 O 1.36137 * 119.37523 * 179.64517 * 24 23 22 30 30 H 1.09002 * 109.47013 * 179.64456 * 1 2 3 31 31 H 1.09004 * 109.46706 * 299.64036 * 1 2 3 32 32 H 1.08999 * 109.46769 * 59.64304 * 1 2 3 33 33 H 0.96996 * 120.00015 * 340.18539 * 6 4 2 34 34 H 0.96996 * 120.00540 * 180.02562 * 10 9 7 35 35 H 1.08999 * 111.00448 * 206.23117 * 15 4 2 36 36 H 1.09001 * 111.03639 * 82.39402 * 15 4 2 37 37 H 1.09000 * 110.36481 * 278.17081 * 16 15 4 38 38 H 1.08997 * 110.37112 * 155.84733 * 16 15 4 39 39 H 1.07997 * 120.02753 * 0.02562 * 21 20 18 40 40 H 1.07995 * 119.83285 * 180.33658 * 22 21 20 41 41 H 1.07996 * 119.79222 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.71123 * 165.94232 * 27 26 25 43 43 H 1.09001 * 109.71315 * 286.57071 * 27 26 25 44 44 H 1.09000 * 109.70351 * 60.00868 * 28 27 26 45 45 H 1.09000 * 109.70841 * 180.58094 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0522 -0.7513 1.2427 5 1 1.3050 -1.4513 1.6168 6 7 2.4473 0.1953 2.2887 7 6 2.5496 -0.2240 3.5883 8 1 2.3387 -1.2522 3.8422 9 6 2.9245 0.6728 4.5793 10 7 3.1821 1.9259 4.2699 11 14 3.0634 0.1012 6.3523 12 1 4.0764 -0.9807 6.4456 13 1 3.4773 1.2413 7.2091 14 1 1.7477 -0.4117 6.8116 15 6 3.2889 -1.5101 0.6933 16 6 2.8192 -1.8762 -0.7367 17 7 2.0300 -0.7140 -1.1839 18 6 1.8086 -0.3613 -2.4656 19 8 1.2227 0.6736 -2.7187 20 6 2.2772 -1.2307 -3.5617 21 6 2.2322 -2.6208 -3.4229 22 6 2.6703 -3.4289 -4.4489 23 6 3.1572 -2.8712 -5.6192 24 6 3.2100 -1.4946 -5.7715 25 6 2.7695 -0.6667 -4.7457 26 8 2.8079 0.6847 -4.8758 27 6 3.6493 1.2083 -5.9091 28 6 3.3923 0.4045 -7.1910 29 8 3.6994 -0.9690 -6.9280 30 1 -0.3633 -1.0277 -0.0064 31 1 -0.3633 0.5083 0.8932 32 1 -0.3633 0.5194 -0.8868 33 1 2.6365 1.1188 2.0607 34 1 3.4444 2.5524 4.9624 35 1 3.4897 -2.4065 1.2801 36 1 4.1643 -0.8614 0.6629 37 1 2.1972 -2.7711 -0.7142 38 1 3.6777 -2.0264 -1.3913 39 1 1.8536 -3.0610 -2.5123 40 1 2.6296 -4.5028 -4.3417 41 1 3.4988 -3.5129 -6.4179 42 1 3.4118 2.2584 -6.0798 43 1 4.6948 1.1102 -5.6170 44 1 2.3455 0.4983 -7.4800 45 1 4.0297 0.7774 -7.9927 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986334124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:56 Heat of formation + Delta-G solvation = -76.002166 kcal Electronic energy + Delta-G solvation = -28977.714550 eV Core-core repulsion = 24960.702504 eV Total energy + Delta-G solvation = -4017.012046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.42700 -41.20548 -39.00068 -38.52097 -38.03586 -35.91752 -33.58915 -32.49234 -32.18857 -31.79808 -30.47000 -29.49108 -26.88222 -25.96728 -25.34529 -24.79990 -23.29256 -22.03516 -21.65380 -20.66075 -19.55755 -19.07970 -18.66593 -18.15704 -17.68343 -17.18623 -16.62769 -16.33289 -16.18158 -16.10419 -15.67612 -15.43910 -15.37516 -15.26901 -14.90167 -14.70243 -14.47267 -14.19508 -14.03429 -13.61476 -13.31281 -13.18262 -13.09554 -12.89919 -12.86202 -12.61650 -12.52337 -12.22632 -12.14280 -12.09291 -12.04982 -11.72229 -11.66373 -11.54930 -10.92916 -10.84619 -9.82418 -9.60549 -9.15784 -9.01927 -7.92399 -5.22904 -0.18583 0.25775 1.50172 1.53345 1.59110 1.67176 1.89100 2.01371 2.24579 2.58533 2.68088 3.15619 3.37470 3.45375 3.67168 3.74719 3.80792 3.86521 3.92805 4.02713 4.12206 4.18312 4.23306 4.30718 4.36676 4.40919 4.48800 4.52331 4.53111 4.64830 4.69440 4.71273 4.92487 5.00164 5.04516 5.08344 5.20449 5.22949 5.34798 5.35515 5.46501 5.56123 5.62058 5.85369 6.27220 6.31183 6.52299 7.10839 7.33500 8.05387 8.29591 9.31174 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022223 B = 0.002725 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.632130 B =10271.142875 C =10688.269123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.134 3.866 3 H 0.039 0.961 4 C 0.173 3.827 5 H 0.078 0.922 6 N -0.731 5.731 7 C -0.236 4.236 8 H 0.086 0.914 9 C -0.078 4.078 10 N -0.974 5.974 11 Si 0.975 3.025 12 H -0.274 1.274 13 H -0.302 1.302 14 H -0.276 1.276 15 C -0.148 4.148 16 C 0.104 3.896 17 N -0.604 5.604 18 C 0.571 3.429 19 O -0.572 6.572 20 C -0.151 4.151 21 C -0.080 4.080 22 C -0.108 4.108 23 C -0.087 4.087 24 C 0.027 3.973 25 C 0.077 3.923 26 O -0.320 6.320 27 C 0.006 3.994 28 C 0.022 3.978 29 O -0.314 6.314 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.369 0.631 34 H 0.250 0.750 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.159 0.841 40 H 0.181 0.819 41 H 0.165 0.835 42 H 0.142 0.858 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 -13.644 -24.702 28.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 H 0.057 0.943 4 C 0.064 3.936 5 H 0.096 0.904 6 N -0.370 5.370 7 C -0.367 4.367 8 H 0.104 0.896 9 C -0.270 4.270 10 N -0.624 5.624 11 Si 0.804 3.196 12 H -0.200 1.200 13 H -0.228 1.228 14 H -0.202 1.202 15 C -0.189 4.189 16 C -0.017 4.017 17 N -0.337 5.337 18 C 0.362 3.638 19 O -0.452 6.452 20 C -0.154 4.154 21 C -0.099 4.099 22 C -0.126 4.126 23 C -0.106 4.106 24 C -0.018 4.018 25 C 0.030 3.970 26 O -0.234 6.234 27 C -0.069 4.069 28 C -0.053 4.053 29 O -0.229 6.229 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.201 0.799 34 H 0.058 0.942 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.177 0.823 40 H 0.198 0.802 41 H 0.183 0.817 42 H 0.159 0.841 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.660 -13.113 -24.779 28.042 hybrid contribution 0.274 1.433 1.019 1.779 sum 0.934 -11.679 -23.760 26.492 Atomic orbital electron populations 1.21929 0.93974 1.02740 1.01479 1.21631 0.95013 0.95285 0.85154 0.94299 1.21439 0.95008 0.91043 0.86128 0.90448 1.42546 1.81562 1.09115 1.03756 1.19608 1.37044 0.95384 0.84703 0.89584 1.25609 1.03230 0.95814 1.02311 1.69839 1.54931 1.04221 1.33429 0.85187 0.78158 0.76518 0.79734 1.20037 1.22847 1.20222 1.23415 0.98875 1.01464 0.95156 1.22704 0.95582 0.88312 0.95147 1.48455 1.51945 1.29424 1.03897 1.18127 0.79095 0.84835 0.81762 1.90749 1.44172 1.26439 1.83850 1.19264 1.08990 0.94991 0.92194 1.21586 0.97650 0.89422 1.01232 1.21299 0.98064 1.02046 0.91199 1.21052 0.98991 0.90398 1.00120 1.19019 1.03133 0.93799 0.85818 1.19133 1.00948 0.83408 0.93501 1.86472 1.64385 1.17670 1.54838 1.24028 0.94967 1.01019 0.86867 1.23880 1.04168 0.78935 0.98297 1.86290 1.72206 1.28336 1.36033 0.90584 0.92087 0.93476 0.79887 0.94168 0.88582 0.93202 0.87607 0.89321 0.82315 0.80201 0.81701 0.84069 0.90192 0.90357 0.82242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 9.10 71.98 0.66 -4.32 16 2 C 0.13 5.01 3.18 45.34 0.14 5.16 16 3 H 0.04 1.75 7.68 -2.39 -0.02 1.74 16 4 C 0.17 6.59 3.11 46.18 0.14 6.73 16 5 H 0.08 2.78 7.84 -2.39 -0.02 2.77 16 6 N -0.73 -36.41 5.25 -317.35 -1.67 -38.08 16 7 C -0.24 -12.62 9.98 84.03 0.84 -11.78 16 8 H 0.09 4.27 7.83 -2.91 -0.02 4.25 16 9 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 10 N -0.97 -60.07 13.06 21.65 0.28 -59.78 16 11 Si 0.98 45.36 29.55 68.60 2.03 47.39 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 14 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 15 C -0.15 -4.67 6.76 31.98 0.22 -4.45 16 16 C 0.10 2.54 5.21 86.85 0.45 2.99 16 17 N -0.60 -19.57 3.06 -791.78 -2.43 -22.00 16 18 C 0.57 20.27 7.09 86.70 0.61 20.88 16 19 O -0.57 -25.18 15.19 13.11 0.20 -24.99 16 20 C -0.15 -4.23 5.41 -20.01 -0.11 -4.34 16 21 C -0.08 -1.49 8.18 22.53 0.18 -1.31 16 22 C -0.11 -1.40 10.02 22.21 0.22 -1.18 16 23 C -0.09 -1.35 9.95 22.41 0.22 -1.13 16 24 C 0.03 0.60 6.49 22.54 0.15 0.75 16 25 C 0.08 2.17 6.48 22.90 0.15 2.32 16 26 O -0.32 -9.81 9.02 -66.61 -0.60 -10.41 16 27 C 0.01 0.11 7.26 72.14 0.52 0.63 16 28 C 0.02 0.31 7.26 72.14 0.52 0.84 16 29 O -0.31 -6.12 10.42 -82.84 -0.86 -6.98 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.05 1.75 7.06 -2.39 -0.02 1.73 16 33 H 0.37 20.60 7.50 -92.71 -0.70 19.91 16 34 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.11 1.81 6.92 -2.39 -0.02 1.80 16 38 H 0.09 1.91 7.28 -2.39 -0.02 1.89 16 39 H 0.16 2.27 5.78 -2.91 -0.02 2.25 16 40 H 0.18 0.86 8.06 -2.91 -0.02 0.83 16 41 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 42 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.16 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -79.11 365.30 2.67 -76.43 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.33 Total: 30.56 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 5.40 Total: 7.86 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -3.81 Total: -119.86 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -1.27 Total: -42.38 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -79.11 2.67 -76.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986334124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.432 kcal (2) G-P(sol) polarization free energy of solvation -79.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds