Wall clock time and date at job start Tue Mar 31 2020 17:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.99934 * 2 1 4 4 C 1.54333 * 109.99317 * 238.96383 * 2 1 3 5 5 H 1.08994 * 110.85593 * 100.20136 * 4 2 1 6 6 N 1.46503 * 110.66796 * 337.04568 * 4 2 1 7 7 C 1.36937 * 119.99667 * 96.26001 * 6 4 2 8 8 H 1.07997 * 120.00580 * 0.02562 * 7 6 4 9 9 C 1.38822 * 120.00027 * 179.97438 * 7 6 4 10 10 N 1.31618 * 119.99362 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99809 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47271 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46569 * 120.00415 * 11 9 7 14 14 H 1.48499 * 109.46909 * 239.99863 * 11 9 7 15 15 C 1.55165 * 103.02186 * 218.66872 * 4 2 1 16 16 C 1.54908 * 101.57817 * 35.30230 * 15 4 2 17 17 N 1.47028 * 109.88094 * 121.09485 * 2 1 3 18 18 C 1.34769 * 125.64675 * 298.39807 * 17 2 1 19 19 O 1.21590 * 120.00320 * 3.02756 * 18 17 2 20 20 C 1.47605 * 120.00041 * 183.03276 * 18 17 2 21 21 C 1.39709 * 120.09883 * 326.85685 * 20 18 17 22 22 C 1.37715 * 119.96902 * 180.02562 * 21 20 18 23 23 C 1.39009 * 120.26702 * 0.02562 * 22 21 20 24 24 C 1.39256 * 120.04911 * 359.85903 * 23 22 21 25 25 C 1.38285 * 119.96085 * 0.17885 * 24 23 22 26 26 O 1.36150 * 120.76156 * 180.22380 * 24 23 22 27 27 C 1.43169 * 116.70566 * 342.81330 * 26 24 23 28 28 C 1.53478 * 108.23461 * 46.15320 * 27 26 24 29 29 O 1.36057 * 119.21116 * 179.67843 * 23 22 21 30 30 H 1.08994 * 109.47121 * 295.64941 * 1 2 3 31 31 H 1.09008 * 109.46638 * 55.64738 * 1 2 3 32 32 H 1.08997 * 109.47034 * 175.64229 * 1 2 3 33 33 H 0.97004 * 120.00338 * 276.26730 * 6 4 2 34 34 H 0.97002 * 119.98999 * 179.97438 * 10 9 7 35 35 H 1.08997 * 111.00002 * 277.23020 * 15 4 2 36 36 H 1.08999 * 111.00740 * 153.37632 * 15 4 2 37 37 H 1.09008 * 110.36784 * 204.15223 * 16 15 4 38 38 H 1.09009 * 110.45867 * 81.88279 * 16 15 4 39 39 H 1.08001 * 120.01164 * 0.08298 * 21 20 18 40 40 H 1.08003 * 119.86761 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.02403 * 179.86289 * 25 24 23 42 42 H 1.08998 * 109.71681 * 286.46703 * 27 26 24 43 43 H 1.09002 * 109.74656 * 165.85678 * 27 26 24 44 44 H 1.09001 * 109.70978 * 59.87941 * 28 27 26 45 45 H 1.08999 * 109.70403 * 180.45752 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 1 2.3599 -0.0450 -2.0191 6 7 1.0483 -1.6788 -1.7532 7 6 0.2255 -1.3008 -2.7804 8 1 0.3208 -0.3165 -3.2145 9 6 -0.7306 -2.1832 -3.2646 10 7 -0.8464 -3.3830 -2.7359 11 14 -1.8526 -1.6678 -4.6663 12 1 -1.5216 -0.2808 -5.0809 13 1 -1.6613 -2.5869 -5.8169 14 1 -3.2663 -1.7263 -4.2158 15 6 3.2864 -1.5184 -0.6914 16 6 2.8099 -1.8825 0.7369 17 7 2.0300 -0.7141 1.1840 18 6 1.8073 -0.3621 2.4657 19 8 1.0961 0.5909 2.7197 20 6 2.4267 -1.1333 3.5612 21 6 2.6320 -2.5082 3.4212 22 6 3.2097 -3.2252 4.4452 23 6 3.5899 -2.5868 5.6201 24 6 3.3903 -1.2163 5.7650 25 6 2.8100 -0.4908 4.7407 26 8 3.7613 -0.5755 6.9075 27 6 3.9970 -1.3952 8.0574 28 6 4.8619 -2.5881 7.6278 29 8 4.1527 -3.3173 6.6205 30 1 -0.3633 0.4448 0.9263 31 1 -0.3633 0.5800 -0.8485 32 1 -0.3633 -1.0247 -0.0781 33 1 0.9628 -2.5630 -1.3635 34 1 -1.5148 -3.9994 -3.0740 35 1 4.1670 -0.8769 -0.6579 36 1 3.4807 -2.4157 -1.2790 37 1 3.6655 -2.0412 1.3934 38 1 2.1805 -2.7723 0.7133 39 1 2.3386 -3.0081 2.5100 40 1 3.3672 -4.2881 4.3354 41 1 2.6526 0.5718 4.8529 42 1 3.0473 -1.7539 8.4543 43 1 4.5196 -0.8181 8.8203 44 1 5.8086 -2.2292 7.2239 45 1 5.0496 -3.2338 8.4856 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987506005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:36 Heat of formation + Delta-G solvation = -49.566870 kcal Electronic energy + Delta-G solvation = -28821.338784 eV Core-core repulsion = 24805.473059 eV Total energy + Delta-G solvation = -4015.865725 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.53725 -40.07349 -37.93535 -37.55459 -36.95660 -34.04590 -32.02491 -31.19800 -30.93092 -30.65204 -29.23693 -28.22519 -25.57559 -25.04839 -23.74684 -23.25226 -22.54403 -21.29222 -20.14437 -19.06384 -18.49446 -17.84743 -17.48803 -17.32969 -16.11085 -16.00550 -15.59664 -15.33025 -14.96189 -14.71496 -14.60607 -14.25174 -14.07466 -13.78088 -13.72561 -13.51721 -13.37497 -12.94950 -12.80852 -12.54271 -12.38752 -11.95724 -11.57433 -11.42176 -11.36204 -11.25988 -10.89680 -10.87111 -10.79828 -10.61863 -10.40105 -10.10790 -10.02585 -9.69822 -9.50883 -8.96924 -8.88039 -8.34400 -8.19761 -7.04459 -5.82893 -3.12025 0.76613 1.10990 2.59323 2.83896 2.99120 3.35748 3.41151 3.47711 3.49208 3.66935 3.84431 4.31719 4.41682 4.50264 4.54564 4.62470 4.80130 4.93495 5.02375 5.05277 5.09793 5.17497 5.30978 5.41132 5.58077 5.58659 5.70139 5.71223 5.87453 5.88444 5.91483 6.09650 6.18624 6.22817 6.29488 6.31643 6.45664 6.56782 6.59030 6.68007 6.88147 7.05926 7.10784 7.40620 7.66880 7.89113 8.34509 8.46163 9.47015 10.00269 10.35592 11.39236 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025992 B = 0.002616 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.985988 B =10702.108730 C =11051.548414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.109 3.891 3 H 0.060 0.940 4 C 0.170 3.830 5 H 0.076 0.924 6 N -0.708 5.708 7 C -0.238 4.238 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.905 3.095 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C -0.146 4.146 16 C 0.096 3.904 17 N -0.596 5.596 18 C 0.571 3.429 19 O -0.539 6.539 20 C -0.116 4.116 21 C -0.086 4.086 22 C -0.119 4.119 23 C 0.067 3.933 24 C 0.040 3.960 25 C -0.059 4.059 26 O -0.306 6.306 27 C 0.020 3.980 28 C 0.020 3.980 29 O -0.305 6.305 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.078 0.922 43 H 0.122 0.878 44 H 0.078 0.922 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.325 0.404 19.575 24.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.004 3.996 3 H 0.078 0.922 4 C 0.057 3.943 5 H 0.093 0.907 6 N -0.347 5.347 7 C -0.369 4.369 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.736 3.264 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.186 4.186 16 C -0.027 4.027 17 N -0.329 5.329 18 C 0.360 3.640 19 O -0.418 6.418 20 C -0.120 4.120 21 C -0.105 4.105 22 C -0.138 4.138 23 C 0.021 3.979 24 C -0.005 4.005 25 C -0.079 4.079 26 O -0.221 6.221 27 C -0.056 4.056 28 C -0.056 4.056 29 O -0.220 6.220 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.219 0.781 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.166 0.834 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.096 0.904 43 H 0.140 0.860 44 H 0.097 0.903 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.848 1.002 19.651 24.061 hybrid contribution -0.627 -0.181 -0.279 0.710 sum 13.221 0.820 19.372 23.468 Atomic orbital electron populations 1.21826 0.93647 1.03888 1.00256 1.22759 0.96316 0.95382 0.85150 0.92150 1.21261 0.88469 0.92270 0.92272 0.90652 1.42346 1.37977 1.14456 1.39933 1.19241 1.10453 0.98676 1.08569 0.90992 1.24723 0.99760 0.96185 0.99927 1.69660 1.37309 1.06596 1.44210 0.86154 0.80710 0.77602 0.81931 1.20519 1.21928 1.21886 1.23183 0.98631 1.01879 0.94871 1.22581 0.94843 0.89006 0.96235 1.48487 1.51411 1.28106 1.04851 1.17679 0.81090 0.83875 0.81381 1.90769 1.38429 1.29342 1.83266 1.19692 1.03200 0.94136 0.94957 1.21522 0.96831 0.92916 0.99214 1.20385 1.02289 1.00986 0.90106 1.19146 0.98953 0.89631 0.90127 1.18658 1.02599 0.90466 0.88729 1.20368 0.96116 1.00978 0.90406 1.86340 1.84244 1.34339 1.17138 1.23633 1.00991 0.93436 0.87492 1.23652 0.94801 0.95178 0.91969 1.86312 1.67279 1.34202 1.34159 0.93826 0.92089 0.90715 0.78079 0.93514 0.90977 0.89397 0.90892 0.90875 0.83404 0.84103 0.83868 0.90401 0.85998 0.90332 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.20 37.16 0.30 -2.58 16 2 C 0.11 2.00 3.45 -66.94 -0.23 1.77 16 3 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 4 C 0.17 3.09 3.53 -66.08 -0.23 2.86 16 5 H 0.08 1.36 8.06 -51.93 -0.42 0.95 16 6 N -0.71 -16.02 3.65 -51.64 -0.19 -16.21 16 7 C -0.24 -6.13 8.80 -15.06 -0.13 -6.26 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -26.73 13.06 55.49 0.72 -26.01 16 11 Si 0.90 21.76 29.55 -169.99 -5.02 16.74 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 C -0.15 -2.10 6.70 -24.58 -0.16 -2.27 16 16 C 0.10 1.34 5.02 -2.53 -0.01 1.32 16 17 N -0.60 -9.93 3.06 -164.19 -0.50 -10.43 16 18 C 0.57 10.02 7.38 -12.44 -0.09 9.93 16 19 O -0.54 -11.20 15.65 5.29 0.08 -11.12 16 20 C -0.12 -1.70 5.58 -104.99 -0.59 -2.28 16 21 C -0.09 -1.07 7.90 -39.22 -0.31 -1.38 16 22 C -0.12 -1.34 9.94 -39.49 -0.39 -1.73 16 23 C 0.07 0.79 6.51 -38.92 -0.25 0.54 16 24 C 0.04 0.51 6.48 -39.19 -0.25 0.25 16 25 C -0.06 -0.82 9.51 -39.03 -0.37 -1.20 16 26 O -0.31 -3.42 10.42 -32.91 -0.34 -3.77 16 27 C 0.02 0.14 7.26 37.41 0.27 0.41 16 28 C 0.02 0.13 7.25 37.41 0.27 0.40 16 29 O -0.31 -3.14 10.41 -32.61 -0.34 -3.48 16 30 H 0.04 0.93 6.65 -51.93 -0.35 0.58 16 31 H 0.06 1.30 7.82 -51.92 -0.41 0.89 16 32 H 0.07 1.75 7.06 -51.93 -0.37 1.39 16 33 H 0.38 9.32 7.85 -40.82 -0.32 9.00 16 34 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.07 0.85 6.51 -51.92 -0.34 0.51 16 38 H 0.07 1.05 7.19 -51.92 -0.37 0.67 16 39 H 0.15 1.72 5.14 -52.49 -0.27 1.45 16 40 H 0.14 1.30 8.06 -52.48 -0.42 0.87 16 41 H 0.14 2.01 7.97 -52.49 -0.42 1.59 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.12 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 361.56 15.07 5.45 5.45 Total: -1.00 -32.14 361.56 -8.61 -40.75 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.18 Total: 8.66 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -2.28 Total: -0.59 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.03 Total: -52.65 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.60 Total: -18.36 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.14 -8.61 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987506005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.818 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds