Wall clock time and date at job start Tue Mar 31 2020 17:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.99934 * 2 1 4 4 C 1.54333 * 109.99317 * 238.96383 * 2 1 3 5 5 H 1.08994 * 110.85593 * 100.20136 * 4 2 1 6 6 N 1.46503 * 110.66796 * 337.04568 * 4 2 1 7 7 C 1.36937 * 119.99667 * 96.26001 * 6 4 2 8 8 H 1.07997 * 120.00580 * 0.02562 * 7 6 4 9 9 C 1.38822 * 120.00027 * 179.97438 * 7 6 4 10 10 N 1.31618 * 119.99362 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99809 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47271 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46569 * 120.00415 * 11 9 7 14 14 H 1.48499 * 109.46909 * 239.99863 * 11 9 7 15 15 C 1.55165 * 103.02186 * 218.66872 * 4 2 1 16 16 C 1.54908 * 101.57817 * 35.30230 * 15 4 2 17 17 N 1.47028 * 109.88094 * 121.09485 * 2 1 3 18 18 C 1.34769 * 125.64675 * 298.39807 * 17 2 1 19 19 O 1.21590 * 120.00320 * 3.02756 * 18 17 2 20 20 C 1.47605 * 120.00041 * 183.03276 * 18 17 2 21 21 C 1.39709 * 120.09883 * 326.85685 * 20 18 17 22 22 C 1.37715 * 119.96902 * 180.02562 * 21 20 18 23 23 C 1.39009 * 120.26702 * 0.02562 * 22 21 20 24 24 C 1.39256 * 120.04911 * 359.85903 * 23 22 21 25 25 C 1.38285 * 119.96085 * 0.17885 * 24 23 22 26 26 O 1.36150 * 120.76156 * 180.22380 * 24 23 22 27 27 C 1.43169 * 116.70566 * 342.81330 * 26 24 23 28 28 C 1.53478 * 108.23461 * 46.15320 * 27 26 24 29 29 O 1.36057 * 119.21116 * 179.67843 * 23 22 21 30 30 H 1.08994 * 109.47121 * 295.64941 * 1 2 3 31 31 H 1.09008 * 109.46638 * 55.64738 * 1 2 3 32 32 H 1.08997 * 109.47034 * 175.64229 * 1 2 3 33 33 H 0.97004 * 120.00338 * 276.26730 * 6 4 2 34 34 H 0.97002 * 119.98999 * 179.97438 * 10 9 7 35 35 H 1.08997 * 111.00002 * 277.23020 * 15 4 2 36 36 H 1.08999 * 111.00740 * 153.37632 * 15 4 2 37 37 H 1.09008 * 110.36784 * 204.15223 * 16 15 4 38 38 H 1.09009 * 110.45867 * 81.88279 * 16 15 4 39 39 H 1.08001 * 120.01164 * 0.08298 * 21 20 18 40 40 H 1.08003 * 119.86761 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.02403 * 179.86289 * 25 24 23 42 42 H 1.08998 * 109.71681 * 286.46703 * 27 26 24 43 43 H 1.09002 * 109.74656 * 165.85678 * 27 26 24 44 44 H 1.09001 * 109.70978 * 59.87941 * 28 27 26 45 45 H 1.08999 * 109.70403 * 180.45752 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 1 2.3599 -0.0450 -2.0191 6 7 1.0483 -1.6788 -1.7532 7 6 0.2255 -1.3008 -2.7804 8 1 0.3208 -0.3165 -3.2145 9 6 -0.7306 -2.1832 -3.2646 10 7 -0.8464 -3.3830 -2.7359 11 14 -1.8526 -1.6678 -4.6663 12 1 -1.5216 -0.2808 -5.0809 13 1 -1.6613 -2.5869 -5.8169 14 1 -3.2663 -1.7263 -4.2158 15 6 3.2864 -1.5184 -0.6914 16 6 2.8099 -1.8825 0.7369 17 7 2.0300 -0.7141 1.1840 18 6 1.8073 -0.3621 2.4657 19 8 1.0961 0.5909 2.7197 20 6 2.4267 -1.1333 3.5612 21 6 2.6320 -2.5082 3.4212 22 6 3.2097 -3.2252 4.4452 23 6 3.5899 -2.5868 5.6201 24 6 3.3903 -1.2163 5.7650 25 6 2.8100 -0.4908 4.7407 26 8 3.7613 -0.5755 6.9075 27 6 3.9970 -1.3952 8.0574 28 6 4.8619 -2.5881 7.6278 29 8 4.1527 -3.3173 6.6205 30 1 -0.3633 0.4448 0.9263 31 1 -0.3633 0.5800 -0.8485 32 1 -0.3633 -1.0247 -0.0781 33 1 0.9628 -2.5630 -1.3635 34 1 -1.5148 -3.9994 -3.0740 35 1 4.1670 -0.8769 -0.6579 36 1 3.4807 -2.4157 -1.2790 37 1 3.6655 -2.0412 1.3934 38 1 2.1805 -2.7723 0.7133 39 1 2.3386 -3.0081 2.5100 40 1 3.3672 -4.2881 4.3354 41 1 2.6526 0.5718 4.8529 42 1 3.0473 -1.7539 8.4543 43 1 4.5196 -0.8181 8.8203 44 1 5.8086 -2.2292 7.2239 45 1 5.0496 -3.2338 8.4856 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987506005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:35 Heat of formation + Delta-G solvation = -70.160233 kcal Electronic energy + Delta-G solvation = -28822.231780 eV Core-core repulsion = 24805.473059 eV Total energy + Delta-G solvation = -4016.758721 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.36887 -41.35906 -39.16287 -38.33835 -38.15646 -35.77724 -33.49178 -32.43126 -31.94712 -31.87789 -30.61041 -29.34687 -26.95221 -26.06596 -25.37226 -24.55073 -23.64043 -22.23651 -21.38119 -20.29116 -19.48476 -19.31491 -18.74616 -18.28335 -17.49431 -17.08867 -16.57323 -16.40143 -16.20664 -15.90797 -15.52654 -15.40020 -15.34424 -15.19075 -14.96770 -14.80446 -14.65471 -14.36418 -13.99624 -13.77465 -13.55090 -13.14266 -13.02877 -12.85541 -12.82699 -12.40475 -12.31454 -12.27151 -12.10499 -12.01805 -11.75269 -11.63515 -11.51994 -11.46549 -11.00709 -10.86215 -9.85224 -9.60065 -9.21464 -8.96605 -7.89536 -5.15834 -0.24926 0.17112 1.48844 1.51352 1.58818 1.60941 1.88597 2.04963 2.29372 2.59323 2.60975 3.18883 3.38564 3.50235 3.59635 3.70639 3.90617 3.94302 3.98334 4.03829 4.07911 4.18164 4.26978 4.30892 4.42767 4.52827 4.57858 4.58629 4.61559 4.70221 4.75752 4.84235 4.93030 4.98251 5.03493 5.14547 5.21088 5.27888 5.30261 5.38130 5.52382 5.57735 5.63127 5.80998 6.29351 6.32297 6.56267 7.10154 7.40730 8.12995 8.37271 9.33463 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025992 B = 0.002616 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.985988 B =10702.108730 C =11051.548414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.113 3.887 3 H 0.067 0.933 4 C 0.164 3.836 5 H 0.081 0.919 6 N -0.714 5.714 7 C -0.223 4.223 8 H 0.076 0.924 9 C -0.070 4.070 10 N -0.964 5.964 11 Si 0.959 3.041 12 H -0.268 1.268 13 H -0.295 1.295 14 H -0.302 1.302 15 C -0.132 4.132 16 C 0.096 3.904 17 N -0.596 5.596 18 C 0.567 3.433 19 O -0.583 6.583 20 C -0.133 4.133 21 C -0.082 4.082 22 C -0.115 4.115 23 C 0.072 3.928 24 C 0.038 3.962 25 C -0.072 4.072 26 O -0.323 6.323 27 C 0.011 3.989 28 C 0.014 3.986 29 O -0.313 6.313 30 H 0.032 0.968 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.376 0.624 34 H 0.248 0.752 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.131 0.869 42 H 0.080 0.920 43 H 0.156 0.844 44 H 0.085 0.915 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.843 -0.258 21.018 26.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.007 3.993 3 H 0.085 0.915 4 C 0.053 3.947 5 H 0.098 0.902 6 N -0.352 5.352 7 C -0.355 4.355 8 H 0.094 0.906 9 C -0.263 4.263 10 N -0.615 5.615 11 Si 0.790 3.210 12 H -0.192 1.192 13 H -0.223 1.223 14 H -0.230 1.230 15 C -0.170 4.170 16 C -0.025 4.025 17 N -0.327 5.327 18 C 0.358 3.642 19 O -0.465 6.465 20 C -0.136 4.136 21 C -0.101 4.101 22 C -0.133 4.133 23 C 0.026 3.974 24 C -0.007 4.007 25 C -0.092 4.092 26 O -0.239 6.239 27 C -0.063 4.063 28 C -0.060 4.060 29 O -0.227 6.227 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.209 0.791 34 H 0.057 0.943 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.088 0.912 39 H 0.173 0.827 40 H 0.184 0.816 41 H 0.149 0.851 42 H 0.098 0.902 43 H 0.174 0.826 44 H 0.104 0.896 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 16.426 0.361 21.108 26.749 hybrid contribution -1.310 0.072 -0.519 1.411 sum 15.116 0.433 20.590 25.546 Atomic orbital electron populations 1.21634 0.95878 1.01477 0.99187 1.22545 0.94356 0.96102 0.86251 0.91541 1.21466 0.88966 0.92186 0.92116 0.90152 1.42433 1.38666 1.14752 1.39387 1.19539 1.09688 0.98239 1.08054 0.90650 1.25357 1.01765 0.96612 1.02530 1.69786 1.38267 1.07583 1.45896 0.85277 0.78536 0.77680 0.79525 1.19220 1.22291 1.23010 1.23119 0.97530 1.01955 0.94420 1.22752 0.95468 0.87675 0.96648 1.48508 1.51323 1.28618 1.04261 1.18182 0.80468 0.83503 0.82070 1.90734 1.40390 1.31403 1.83958 1.19446 1.04944 0.94867 0.94342 1.21557 0.96651 0.91855 1.00006 1.20638 1.01168 1.02030 0.89444 1.19272 0.98185 0.89269 0.90668 1.18642 1.02246 0.90811 0.88991 1.20311 0.97174 1.00667 0.91023 1.86317 1.84024 1.35800 1.17718 1.24034 1.01737 0.93944 0.86592 1.24032 0.94316 0.95573 0.92124 1.86308 1.67247 1.34837 1.34332 0.94907 0.93065 0.93597 0.79107 0.94318 0.88114 0.88932 0.87734 0.91217 0.82690 0.81616 0.85112 0.90219 0.82633 0.89646 0.82370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.20 71.98 0.59 -4.72 16 2 C 0.11 4.14 3.45 45.34 0.16 4.29 16 3 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.16 5.76 3.53 46.19 0.16 5.93 16 5 H 0.08 2.77 8.06 -2.39 -0.02 2.76 16 6 N -0.71 -32.27 3.65 -317.29 -1.16 -33.43 16 7 C -0.22 -11.47 8.80 84.04 0.74 -10.74 16 8 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 9 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 10 N -0.96 -56.55 13.06 21.65 0.28 -56.26 16 11 Si 0.96 45.30 29.55 68.60 2.03 47.33 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 14 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 15 C -0.13 -3.44 6.70 31.99 0.21 -3.22 16 16 C 0.10 2.49 5.02 86.86 0.44 2.93 16 17 N -0.60 -19.57 3.06 -791.65 -2.43 -21.99 16 18 C 0.57 20.14 7.38 86.72 0.64 20.78 16 19 O -0.58 -25.13 15.65 -4.00 -0.06 -25.19 16 20 C -0.13 -3.84 5.58 -20.10 -0.11 -3.95 16 21 C -0.08 -1.91 7.90 22.50 0.18 -1.73 16 22 C -0.11 -2.30 9.94 22.33 0.22 -2.08 16 23 C 0.07 1.55 6.51 22.70 0.15 1.69 16 24 C 0.04 0.92 6.48 22.53 0.15 1.07 16 25 C -0.07 -2.02 9.51 22.63 0.22 -1.80 16 26 O -0.32 -6.79 10.42 -83.13 -0.87 -7.65 16 27 C 0.01 0.12 7.26 72.14 0.52 0.65 16 28 C 0.01 0.13 7.25 72.14 0.52 0.65 16 29 O -0.31 -5.48 10.41 -82.06 -0.85 -6.33 16 30 H 0.03 1.44 6.65 -2.39 -0.02 1.43 16 31 H 0.05 2.24 7.82 -2.38 -0.02 2.22 16 32 H 0.04 2.22 7.06 -2.39 -0.02 2.20 16 33 H 0.38 18.35 7.85 -92.71 -0.73 17.62 16 34 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 35 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.10 2.10 6.51 -2.38 -0.02 2.09 16 38 H 0.07 1.89 7.19 -2.38 -0.02 1.88 16 39 H 0.16 3.33 5.14 -2.91 -0.01 3.32 16 40 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 41 H 0.13 3.86 7.97 -2.91 -0.02 3.84 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.16 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.16 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -71.80 361.56 2.49 -69.31 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.30 Total: 27.86 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 5.25 Total: 6.36 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -3.30 Total: -111.68 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -1.78 Total: -39.18 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -71.80 2.49 -69.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987506005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.848 kcal (2) G-P(sol) polarization free energy of solvation -71.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds