Wall clock time and date at job start Tue Mar 31 2020 17:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.00053 * 2 1 4 4 C 1.54323 * 109.88066 * 121.09506 * 2 1 3 5 5 H 1.08992 * 110.72336 * 23.24589 * 4 2 1 6 6 N 1.46506 * 110.72166 * 259.96939 * 4 2 1 7 7 C 1.36934 * 119.99976 * 160.02110 * 6 4 2 8 8 H 1.07996 * 120.00100 * 0.02562 * 7 6 4 9 9 C 1.38807 * 119.99901 * 180.02562 * 7 6 4 10 10 N 1.31628 * 120.00371 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00306 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46899 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46971 * 119.99688 * 11 9 7 14 14 H 1.48491 * 109.47304 * 240.00501 * 11 9 7 15 15 C 1.55161 * 102.94417 * 141.61066 * 4 2 1 16 16 C 1.54910 * 101.57925 * 324.49959 * 15 4 2 17 17 N 1.47025 * 109.88325 * 238.90154 * 2 1 3 18 18 C 1.34776 * 125.64821 * 61.67829 * 17 2 1 19 19 O 1.21586 * 119.99676 * 356.32521 * 18 17 2 20 20 C 1.47611 * 120.00247 * 176.31881 * 18 17 2 21 21 C 1.39710 * 120.09339 * 27.36408 * 20 18 17 22 22 C 1.37719 * 119.96535 * 180.02562 * 21 20 18 23 23 C 1.39015 * 120.26873 * 359.97438 * 22 21 20 24 24 C 1.39256 * 120.04401 * 359.90260 * 23 22 21 25 25 C 1.38284 * 119.96393 * 359.89248 * 24 23 22 26 26 O 1.36151 * 120.76119 * 180.22746 * 24 23 22 27 27 C 1.43165 * 116.69099 * 342.68658 * 26 24 23 28 28 C 1.53467 * 108.22331 * 46.24428 * 27 26 24 29 29 O 1.35966 * 119.24347 * 179.66853 * 23 22 21 30 30 H 1.08996 * 109.47254 * 298.90815 * 1 2 3 31 31 H 1.09006 * 109.46781 * 58.90527 * 1 2 3 32 32 H 1.08999 * 109.47106 * 178.90443 * 1 2 3 33 33 H 0.97003 * 119.99895 * 340.03373 * 6 4 2 34 34 H 0.96992 * 120.00292 * 180.02562 * 10 9 7 35 35 H 1.08995 * 111.00611 * 206.42369 * 15 4 2 36 36 H 1.09003 * 111.03694 * 82.57977 * 15 4 2 37 37 H 1.09003 * 110.36916 * 155.84986 * 16 15 4 38 38 H 1.09003 * 110.36294 * 278.17227 * 16 15 4 39 39 H 1.07993 * 120.01809 * 0.03008 * 21 20 18 40 40 H 1.07996 * 119.86567 * 180.02562 * 22 21 20 41 41 H 1.08007 * 120.02719 * 180.19918 * 25 24 23 42 42 H 1.08998 * 109.71478 * 165.92238 * 27 26 24 43 43 H 1.09002 * 109.71432 * 286.51761 * 27 26 24 44 44 H 1.09000 * 109.70753 * 59.89132 * 28 27 26 45 45 H 1.09004 * 109.70708 * 180.46909 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0547 -0.7495 1.2427 5 1 1.3051 -1.4459 1.6183 6 7 2.4555 0.1961 2.2875 7 6 2.5574 -0.2225 3.5873 8 1 2.3428 -1.2498 3.8422 9 6 2.9366 0.6735 4.5773 10 7 3.1976 1.9258 4.2668 11 14 3.0764 0.1024 6.3504 12 1 2.7329 -1.3399 6.4344 13 1 4.4672 0.3082 6.8285 14 1 2.1408 0.8846 7.1977 15 6 3.2876 -1.5143 0.6925 16 6 2.8145 -1.8794 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.8085 -0.3614 -2.4657 19 8 1.0891 0.5852 -2.7200 20 6 2.4394 -1.1241 -3.5607 21 6 2.7676 -2.4699 -3.3785 22 6 3.3567 -3.1789 -4.4018 23 6 3.6264 -2.5612 -5.6176 24 6 3.2993 -1.2208 -5.8063 25 6 2.7039 -0.5046 -4.7842 26 8 3.5528 -0.6025 -6.9926 27 6 4.4857 -1.2465 -7.8670 28 6 4.1301 -2.7379 -7.9339 29 8 4.2146 -3.2790 -6.6113 30 1 -0.3633 0.4968 0.8996 31 1 -0.3633 0.5308 -0.8801 32 1 -0.3633 -1.0275 -0.0196 33 1 2.6484 1.1188 2.0586 34 1 3.4629 2.5518 4.9585 35 1 3.4851 -2.4110 1.2797 36 1 4.1658 -0.8694 0.6604 37 1 3.6716 -2.0339 -1.3922 38 1 2.1885 -2.7715 -0.7127 39 1 2.5595 -2.9539 -2.4359 40 1 3.6093 -4.2191 -4.2594 41 1 2.4469 0.5342 -4.9306 42 1 4.4197 -0.8078 -8.8626 43 1 5.4971 -1.1261 -7.4786 44 1 3.1161 -2.8572 -8.3156 45 1 4.8323 -3.2542 -8.5885 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987506006.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:40 Heat of formation + Delta-G solvation = -49.680406 kcal Electronic energy + Delta-G solvation = -28415.011423 eV Core-core repulsion = 24399.140775 eV Total energy + Delta-G solvation = -4015.870649 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.61537 -40.20599 -37.95019 -37.62113 -37.04813 -34.18994 -32.22442 -31.23516 -31.00801 -30.85631 -29.37380 -28.48081 -25.58197 -25.13525 -23.83237 -23.11105 -22.55163 -21.32971 -20.29773 -19.48758 -18.62037 -17.91278 -17.58015 -17.20994 -16.36982 -16.00305 -15.55829 -15.43667 -15.09767 -14.78350 -14.69971 -14.35418 -14.14593 -13.91464 -13.82335 -13.45131 -13.38478 -13.14299 -12.82045 -12.56034 -12.31664 -12.10841 -11.88199 -11.49344 -11.45042 -11.39792 -11.12001 -11.03664 -10.88175 -10.77405 -10.58447 -10.24025 -10.01956 -9.79001 -9.63509 -8.98710 -8.93903 -8.46040 -8.33901 -7.03728 -5.82266 -3.12794 0.65840 1.03100 2.56866 2.72400 2.84945 3.19573 3.40477 3.46126 3.48492 3.61048 3.78881 4.24986 4.36859 4.43799 4.51330 4.54228 4.72771 4.86457 4.95815 5.00711 5.06723 5.10284 5.25493 5.32739 5.45641 5.50913 5.55458 5.64182 5.78075 5.78472 5.83056 5.93106 6.07487 6.08196 6.12675 6.22505 6.30052 6.45486 6.50690 6.58233 6.63025 6.74270 6.92223 7.04164 7.65474 7.71635 8.30177 8.35229 9.46587 10.01041 10.35666 11.39961 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025759 B = 0.002382 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.720422 B =11750.565235 C =12107.911601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.128 3.872 3 H 0.079 0.921 4 C 0.176 3.824 5 H 0.066 0.934 6 N -0.715 5.715 7 C -0.242 4.242 8 H 0.073 0.927 9 C -0.011 4.011 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.157 4.157 16 C 0.089 3.911 17 N -0.601 5.601 18 C 0.573 3.427 19 O -0.537 6.537 20 C -0.119 4.119 21 C -0.092 4.092 22 C -0.121 4.121 23 C 0.070 3.930 24 C 0.040 3.960 25 C -0.056 4.056 26 O -0.305 6.305 27 C 0.020 3.980 28 C 0.020 3.980 29 O -0.305 6.305 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.152 0.848 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.123 0.877 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.130 -11.969 -24.460 27.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.025 3.975 3 H 0.097 0.903 4 C 0.065 3.935 5 H 0.083 0.917 6 N -0.355 5.355 7 C -0.373 4.373 8 H 0.091 0.909 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.218 1.218 15 C -0.198 4.198 16 C -0.034 4.034 17 N -0.334 5.334 18 C 0.362 3.638 19 O -0.416 6.416 20 C -0.123 4.123 21 C -0.111 4.111 22 C -0.140 4.140 23 C 0.024 3.976 24 C -0.005 4.005 25 C -0.075 4.075 26 O -0.220 6.220 27 C -0.056 4.056 28 C -0.056 4.056 29 O -0.220 6.220 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.169 0.831 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.141 0.859 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.744 -11.504 -24.527 27.147 hybrid contribution 0.429 -0.033 0.616 0.751 sum 2.172 -11.536 -23.911 26.638 Atomic orbital electron populations 1.22059 0.94714 1.01688 1.02851 1.21940 0.94561 0.96905 0.84138 0.90297 1.21252 0.93522 0.91633 0.87130 0.91657 1.42356 1.80922 1.09130 1.03132 1.19235 1.39135 0.95146 0.83791 0.90923 1.24774 1.02138 0.95645 0.98172 1.69675 1.52580 1.02995 1.32468 0.86112 0.77270 0.77691 0.85041 1.20491 1.21855 1.21826 1.23612 1.01489 1.01850 0.92874 1.22769 0.94879 0.88297 0.97479 1.48417 1.51664 1.28537 1.04761 1.17674 0.81137 0.83707 0.81245 1.90777 1.38227 1.29354 1.83206 1.19625 1.03708 0.94692 0.94244 1.21690 0.96608 0.93262 0.99522 1.20375 1.01981 1.00822 0.90786 1.19152 0.98867 0.89145 0.90435 1.18673 1.03824 0.90159 0.87808 1.20408 0.97435 1.00701 0.88978 1.86357 1.60864 1.48483 1.26250 1.23644 0.93054 0.93210 0.95678 1.23666 1.04085 0.94866 0.82972 1.86277 1.72781 1.47356 1.15535 0.91107 0.91781 0.93060 0.77962 0.93417 0.90439 0.90500 0.90399 0.91254 0.83056 0.84125 0.83648 0.85928 0.90331 0.90289 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.09 37.15 0.34 -2.26 16 2 C 0.13 2.26 3.23 -66.95 -0.22 2.04 16 3 H 0.08 1.57 7.69 -51.93 -0.40 1.17 16 4 C 0.18 3.31 3.12 -66.09 -0.21 3.10 16 5 H 0.07 1.22 7.83 -51.93 -0.41 0.81 16 6 N -0.71 -17.14 5.25 -51.65 -0.27 -17.41 16 7 C -0.24 -6.41 9.98 -15.06 -0.15 -6.56 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 10 N -0.93 -27.53 13.06 55.49 0.72 -26.80 16 11 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 C -0.16 -2.49 6.77 -24.58 -0.17 -2.66 16 16 C 0.09 1.13 5.02 -2.53 -0.01 1.12 16 17 N -0.60 -9.35 3.06 -164.20 -0.50 -9.85 16 18 C 0.57 9.35 7.45 -12.44 -0.09 9.25 16 19 O -0.54 -10.43 15.57 5.29 0.08 -10.35 16 20 C -0.12 -1.61 5.70 -104.99 -0.60 -2.21 16 21 C -0.09 -1.00 7.91 -39.22 -0.31 -1.31 16 22 C -0.12 -1.21 9.94 -39.48 -0.39 -1.61 16 23 C 0.07 0.76 6.51 -38.92 -0.25 0.51 16 24 C 0.04 0.48 6.48 -39.19 -0.25 0.23 16 25 C -0.06 -0.74 9.50 -39.03 -0.37 -1.11 16 26 O -0.30 -3.29 10.42 -32.98 -0.34 -3.63 16 27 C 0.02 0.13 7.26 37.40 0.27 0.40 16 28 C 0.02 0.12 7.26 37.40 0.27 0.39 16 29 O -0.31 -2.91 10.41 -32.39 -0.34 -3.25 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.12 6.79 -51.93 -0.35 0.77 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.39 10.04 7.51 -40.82 -0.31 9.73 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.08 0.87 6.17 -51.93 -0.32 0.55 16 38 H 0.07 0.73 7.28 -51.93 -0.38 0.35 16 39 H 0.15 1.40 4.57 -52.49 -0.24 1.16 16 40 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.15 1.98 7.87 -52.48 -0.41 1.57 16 42 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.12 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -32.91 364.39 -8.59 -41.49 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.17 Total: 8.61 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.24 Total: -1.09 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.05 Total: -54.06 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.60 Total: -17.23 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.91 -8.59 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987506006.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.187 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds