Wall clock time and date at job start Tue Mar 31 2020 17:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.00053 * 2 1 4 4 C 1.54323 * 109.88066 * 121.09506 * 2 1 3 5 5 H 1.08992 * 110.72336 * 23.24589 * 4 2 1 6 6 N 1.46506 * 110.72166 * 259.96939 * 4 2 1 7 7 C 1.36934 * 119.99976 * 160.02110 * 6 4 2 8 8 H 1.07996 * 120.00100 * 0.02562 * 7 6 4 9 9 C 1.38807 * 119.99901 * 180.02562 * 7 6 4 10 10 N 1.31628 * 120.00371 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00306 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46899 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46971 * 119.99688 * 11 9 7 14 14 H 1.48491 * 109.47304 * 240.00501 * 11 9 7 15 15 C 1.55161 * 102.94417 * 141.61066 * 4 2 1 16 16 C 1.54910 * 101.57925 * 324.49959 * 15 4 2 17 17 N 1.47025 * 109.88325 * 238.90154 * 2 1 3 18 18 C 1.34776 * 125.64821 * 61.67829 * 17 2 1 19 19 O 1.21586 * 119.99676 * 356.32521 * 18 17 2 20 20 C 1.47611 * 120.00247 * 176.31881 * 18 17 2 21 21 C 1.39710 * 120.09339 * 27.36408 * 20 18 17 22 22 C 1.37719 * 119.96535 * 180.02562 * 21 20 18 23 23 C 1.39015 * 120.26873 * 359.97438 * 22 21 20 24 24 C 1.39256 * 120.04401 * 359.90260 * 23 22 21 25 25 C 1.38284 * 119.96393 * 359.89248 * 24 23 22 26 26 O 1.36151 * 120.76119 * 180.22746 * 24 23 22 27 27 C 1.43165 * 116.69099 * 342.68658 * 26 24 23 28 28 C 1.53467 * 108.22331 * 46.24428 * 27 26 24 29 29 O 1.35966 * 119.24347 * 179.66853 * 23 22 21 30 30 H 1.08996 * 109.47254 * 298.90815 * 1 2 3 31 31 H 1.09006 * 109.46781 * 58.90527 * 1 2 3 32 32 H 1.08999 * 109.47106 * 178.90443 * 1 2 3 33 33 H 0.97003 * 119.99895 * 340.03373 * 6 4 2 34 34 H 0.96992 * 120.00292 * 180.02562 * 10 9 7 35 35 H 1.08995 * 111.00611 * 206.42369 * 15 4 2 36 36 H 1.09003 * 111.03694 * 82.57977 * 15 4 2 37 37 H 1.09003 * 110.36916 * 155.84986 * 16 15 4 38 38 H 1.09003 * 110.36294 * 278.17227 * 16 15 4 39 39 H 1.07993 * 120.01809 * 0.03008 * 21 20 18 40 40 H 1.07996 * 119.86567 * 180.02562 * 22 21 20 41 41 H 1.08007 * 120.02719 * 180.19918 * 25 24 23 42 42 H 1.08998 * 109.71478 * 165.92238 * 27 26 24 43 43 H 1.09002 * 109.71432 * 286.51761 * 27 26 24 44 44 H 1.09000 * 109.70753 * 59.89132 * 28 27 26 45 45 H 1.09004 * 109.70708 * 180.46909 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0547 -0.7495 1.2427 5 1 1.3051 -1.4459 1.6183 6 7 2.4555 0.1961 2.2875 7 6 2.5574 -0.2225 3.5873 8 1 2.3428 -1.2498 3.8422 9 6 2.9366 0.6735 4.5773 10 7 3.1976 1.9258 4.2668 11 14 3.0764 0.1024 6.3504 12 1 2.7329 -1.3399 6.4344 13 1 4.4672 0.3082 6.8285 14 1 2.1408 0.8846 7.1977 15 6 3.2876 -1.5143 0.6925 16 6 2.8145 -1.8794 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.8085 -0.3614 -2.4657 19 8 1.0891 0.5852 -2.7200 20 6 2.4394 -1.1241 -3.5607 21 6 2.7676 -2.4699 -3.3785 22 6 3.3567 -3.1789 -4.4018 23 6 3.6264 -2.5612 -5.6176 24 6 3.2993 -1.2208 -5.8063 25 6 2.7039 -0.5046 -4.7842 26 8 3.5528 -0.6025 -6.9926 27 6 4.4857 -1.2465 -7.8670 28 6 4.1301 -2.7379 -7.9339 29 8 4.2146 -3.2790 -6.6113 30 1 -0.3633 0.4968 0.8996 31 1 -0.3633 0.5308 -0.8801 32 1 -0.3633 -1.0275 -0.0196 33 1 2.6484 1.1188 2.0586 34 1 3.4629 2.5518 4.9585 35 1 3.4851 -2.4110 1.2797 36 1 4.1658 -0.8694 0.6604 37 1 3.6716 -2.0339 -1.3922 38 1 2.1885 -2.7715 -0.7127 39 1 2.5595 -2.9539 -2.4359 40 1 3.6093 -4.2191 -4.2594 41 1 2.4469 0.5342 -4.9306 42 1 4.4197 -0.8078 -8.8626 43 1 5.4971 -1.1261 -7.4786 44 1 3.1161 -2.8572 -8.3156 45 1 4.8323 -3.2542 -8.5885 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987506006.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:39 Heat of formation + Delta-G solvation = -71.627972 kcal Electronic energy + Delta-G solvation = -28415.963141 eV Core-core repulsion = 24399.140775 eV Total energy + Delta-G solvation = -4016.822367 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.38388 -41.40650 -39.10997 -38.34936 -38.17636 -35.94674 -33.62612 -32.57156 -31.95421 -31.86641 -30.79835 -29.43232 -26.96621 -26.11946 -25.14837 -24.47298 -23.63341 -22.22005 -21.64407 -20.63943 -19.49173 -19.14419 -18.81626 -18.28399 -17.62521 -17.03279 -16.61064 -16.40539 -16.32136 -15.92673 -15.56979 -15.47644 -15.41654 -14.98517 -14.95956 -14.80714 -14.62757 -14.34602 -14.03876 -13.72080 -13.48018 -13.33509 -13.17150 -12.95533 -12.85291 -12.55853 -12.37474 -12.26583 -12.09297 -12.03526 -12.02211 -11.67841 -11.53976 -11.50079 -11.02355 -10.87164 -9.88840 -9.64803 -9.21648 -9.00143 -7.92058 -5.22011 -0.27402 0.18379 1.50913 1.51564 1.61390 1.63777 1.74217 2.03478 2.26566 2.59048 2.64572 3.18660 3.35276 3.44761 3.59181 3.68430 3.79292 3.93635 3.99768 4.03612 4.06486 4.14056 4.20031 4.28932 4.36659 4.41093 4.51016 4.56795 4.58171 4.67597 4.68190 4.71846 4.91061 4.93999 4.99875 5.05805 5.18451 5.24518 5.26075 5.31322 5.43957 5.49201 5.57920 5.81132 6.28234 6.29367 6.48647 7.04506 7.34620 8.06736 8.30312 9.31837 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025759 B = 0.002382 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.720422 B =11750.565235 C =12107.911601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.133 3.867 3 H 0.045 0.955 4 C 0.171 3.829 5 H 0.075 0.925 6 N -0.730 5.730 7 C -0.231 4.231 8 H 0.086 0.914 9 C -0.079 4.079 10 N -0.973 5.973 11 Si 0.973 3.027 12 H -0.260 1.260 13 H -0.297 1.297 14 H -0.299 1.299 15 C -0.149 4.149 16 C 0.093 3.907 17 N -0.600 5.600 18 C 0.570 3.430 19 O -0.581 6.581 20 C -0.136 4.136 21 C -0.082 4.082 22 C -0.115 4.115 23 C 0.072 3.928 24 C 0.034 3.966 25 C -0.075 4.075 26 O -0.326 6.326 27 C 0.011 3.989 28 C 0.015 3.985 29 O -0.312 6.312 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.370 0.630 34 H 0.249 0.751 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.174 0.826 40 H 0.172 0.828 41 H 0.126 0.874 42 H 0.154 0.846 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.881 -16.043 -25.897 30.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 H 0.063 0.937 4 C 0.062 3.938 5 H 0.093 0.907 6 N -0.369 5.369 7 C -0.363 4.363 8 H 0.104 0.896 9 C -0.271 4.271 10 N -0.624 5.624 11 Si 0.802 3.198 12 H -0.184 1.184 13 H -0.225 1.225 14 H -0.226 1.226 15 C -0.189 4.189 16 C -0.028 4.028 17 N -0.332 5.332 18 C 0.361 3.639 19 O -0.463 6.463 20 C -0.140 4.140 21 C -0.100 4.100 22 C -0.133 4.133 23 C 0.026 3.974 24 C -0.011 4.011 25 C -0.095 4.095 26 O -0.242 6.242 27 C -0.063 4.063 28 C -0.060 4.060 29 O -0.226 6.226 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.202 0.798 34 H 0.058 0.942 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.191 0.809 40 H 0.189 0.811 41 H 0.144 0.856 42 H 0.171 0.829 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.501 -15.662 -26.007 30.462 hybrid contribution 0.226 1.192 0.833 1.471 sum 2.727 -14.471 -25.174 29.165 Atomic orbital electron populations 1.21950 0.94042 1.02646 1.01672 1.21668 0.95028 0.95430 0.85009 0.93713 1.21453 0.95086 0.91072 0.86219 0.90678 1.42548 1.81289 1.09340 1.03757 1.19662 1.36496 0.95401 0.84702 0.89599 1.25591 1.03400 0.95877 1.02212 1.69846 1.55016 1.04291 1.33239 0.85073 0.76435 0.78066 0.80179 1.18357 1.22460 1.22637 1.23432 0.98907 1.01524 0.95063 1.23007 0.96078 0.88183 0.95521 1.48425 1.51695 1.29109 1.03993 1.18169 0.80548 0.83314 0.81827 1.90746 1.40248 1.31393 1.83863 1.19411 1.05457 0.95853 0.93250 1.21847 0.95744 0.91772 1.00654 1.20720 1.00682 1.02006 0.89875 1.19347 0.97992 0.88696 0.91340 1.18680 1.03745 0.90731 0.87951 1.20341 0.98897 1.00269 0.89974 1.86327 1.61944 1.49647 1.26238 1.24030 0.92286 0.93772 0.96258 1.24018 1.05540 0.94684 0.81729 1.86272 1.72266 1.47452 1.16589 0.92193 0.93015 0.90920 0.79804 0.94207 0.88602 0.92756 0.88018 0.87399 0.80919 0.81054 0.85596 0.82866 0.90049 0.89854 0.82281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 9.09 71.98 0.65 -4.26 16 2 C 0.13 4.77 3.23 45.34 0.15 4.92 16 3 H 0.04 1.91 7.69 -2.39 -0.02 1.89 16 4 C 0.17 6.30 3.12 46.18 0.14 6.45 16 5 H 0.08 2.65 7.83 -2.39 -0.02 2.63 16 6 N -0.73 -35.55 5.25 -317.33 -1.67 -37.22 16 7 C -0.23 -12.18 9.98 84.03 0.84 -11.34 16 8 H 0.09 4.23 7.83 -2.91 -0.02 4.20 16 9 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 10 N -0.97 -59.49 13.06 21.65 0.28 -59.20 16 11 Si 0.97 45.12 29.55 68.60 2.03 47.15 16 12 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 13 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 14 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 15 C -0.15 -4.42 6.77 31.99 0.22 -4.20 16 16 C 0.09 2.09 5.02 86.86 0.44 2.53 16 17 N -0.60 -18.24 3.06 -791.69 -2.43 -20.67 16 18 C 0.57 18.80 7.45 86.72 0.65 19.45 16 19 O -0.58 -23.74 15.57 -3.99 -0.06 -23.80 16 20 C -0.14 -3.60 5.70 -20.10 -0.11 -3.72 16 21 C -0.08 -1.53 7.91 22.50 0.18 -1.35 16 22 C -0.11 -1.88 9.94 22.33 0.22 -1.66 16 23 C 0.07 1.41 6.51 22.70 0.15 1.56 16 24 C 0.03 0.79 6.48 22.53 0.15 0.93 16 25 C -0.08 -2.05 9.50 22.63 0.21 -1.83 16 26 O -0.33 -6.81 10.42 -83.07 -0.87 -7.68 16 27 C 0.01 0.11 7.26 72.14 0.52 0.64 16 28 C 0.01 0.13 7.26 72.14 0.52 0.65 16 29 O -0.31 -4.94 10.41 -80.97 -0.84 -5.78 16 30 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 31 H 0.05 1.88 6.79 -2.38 -0.02 1.86 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.37 20.15 7.51 -92.71 -0.70 19.45 16 34 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 35 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.10 1.88 6.17 -2.39 -0.01 1.86 16 38 H 0.11 1.69 7.28 -2.39 -0.02 1.68 16 39 H 0.17 2.37 4.57 -2.91 -0.01 2.36 16 40 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.13 3.78 7.87 -2.91 -0.02 3.76 16 42 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.16 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -75.25 364.39 2.17 -73.08 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.33 Total: 29.33 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 5.39 Total: 4.78 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -3.81 Total: -117.09 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -1.77 Total: -37.26 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -75.25 2.17 -73.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987506006.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.456 kcal (2) G-P(sol) polarization free energy of solvation -75.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds