Wall clock time and date at job start Tue Mar 31 2020 17:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 109.99802 * 2 1 4 4 C 1.54320 * 109.87911 * 238.90094 * 2 1 3 5 5 H 1.08993 * 110.87598 * 336.82312 * 4 2 1 6 6 N 1.46510 * 110.71626 * 100.02904 * 4 2 1 7 7 C 1.36939 * 119.99743 * 199.97118 * 6 4 2 8 8 H 1.08000 * 120.00057 * 0.02562 * 7 6 4 9 9 C 1.38806 * 119.99825 * 179.97438 * 7 6 4 10 10 N 1.31619 * 119.99939 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00012 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46817 * 60.00421 * 11 9 7 13 13 H 1.48495 * 109.47245 * 300.00191 * 11 9 7 14 14 H 1.48503 * 109.46903 * 179.97438 * 11 9 7 15 15 C 1.55165 * 102.94200 * 218.38951 * 4 2 1 16 16 C 1.54909 * 101.57828 * 35.50329 * 15 4 2 17 17 N 1.47024 * 109.88080 * 121.09396 * 2 1 3 18 18 C 1.34771 * 125.64824 * 298.32457 * 17 2 1 19 19 O 1.21585 * 119.99529 * 176.75761 * 18 17 2 20 20 C 1.47603 * 120.00435 * 356.75563 * 18 17 2 21 21 C 1.39707 * 120.09549 * 354.86612 * 20 18 17 22 22 C 1.37717 * 119.96577 * 179.81187 * 21 20 18 23 23 C 1.39013 * 120.27084 * 0.53519 * 22 21 20 24 24 C 1.39257 * 120.04534 * 359.63673 * 23 22 21 25 25 C 1.38290 * 119.96055 * 0.12092 * 24 23 22 26 26 O 1.36145 * 120.76446 * 180.26984 * 24 23 22 27 27 C 1.43164 * 116.70545 * 342.85697 * 26 24 23 28 28 C 1.53458 * 108.23801 * 46.14494 * 27 26 24 29 29 O 1.35969 * 119.24128 * 179.55126 * 23 22 21 30 30 H 1.08999 * 109.46612 * 161.86041 * 1 2 3 31 31 H 1.08997 * 109.46914 * 281.85670 * 1 2 3 32 32 H 1.08994 * 109.46807 * 41.86392 * 1 2 3 33 33 H 0.96998 * 119.99961 * 19.97382 * 6 4 2 34 34 H 0.96996 * 120.00584 * 359.97438 * 10 9 7 35 35 H 1.08996 * 111.00141 * 153.58095 * 15 4 2 36 36 H 1.09008 * 111.00012 * 277.43318 * 15 4 2 37 37 H 1.09006 * 110.36468 * 81.83206 * 16 15 4 38 38 H 1.08996 * 110.36370 * 204.03993 * 16 15 4 39 39 H 1.07993 * 120.01656 * 0.08018 * 21 20 18 40 40 H 1.08004 * 119.86567 * 180.26809 * 22 21 20 41 41 H 1.08001 * 120.02799 * 179.97438 * 25 24 23 42 42 H 1.09004 * 109.71133 * 165.83013 * 27 26 24 43 43 H 1.09004 * 109.71405 * 286.40879 * 27 26 24 44 44 H 1.09001 * 109.71207 * 59.87061 * 28 27 26 45 45 H 1.09005 * 109.71088 * 180.45474 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 1.3065 -1.4459 -1.6210 6 7 2.4555 0.1961 -2.2875 7 6 2.5576 -0.2226 -3.5873 8 1 2.3423 -1.2498 -3.8423 9 6 2.9366 0.6734 -4.5773 10 7 3.1985 1.9253 -4.2667 11 14 3.0752 0.1025 -6.3506 12 1 1.7579 -0.4051 -6.8115 13 1 4.0842 -0.9830 -6.4437 14 1 3.4928 1.2421 -7.2063 15 6 3.2877 -1.5143 -0.6923 16 6 2.8145 -1.8794 0.7369 17 7 2.0301 -0.7140 1.1840 18 6 1.8085 -0.3612 2.4657 19 8 2.2232 -1.0612 3.3692 20 6 1.0626 0.8749 2.7726 21 6 0.6784 1.7356 1.7414 22 6 -0.0209 2.8863 2.0304 23 6 -0.3375 3.2019 3.3467 24 6 0.0457 2.3500 4.3795 25 6 0.7437 1.1905 4.0953 26 8 -0.2614 2.6421 5.6733 27 6 -0.6371 3.9944 5.9559 28 6 -1.6477 4.4443 4.8923 29 8 -1.0206 4.3479 3.6090 30 1 -0.3632 -0.9766 -0.3200 31 1 -0.3633 0.2111 1.0057 32 1 -0.3633 0.7653 -0.6858 33 1 2.6485 1.1187 -2.0586 34 1 3.1262 2.2219 -3.3460 35 1 3.4852 -2.4111 -1.2796 36 1 4.1655 -0.8688 -0.6603 37 1 2.1886 -2.7715 0.7129 38 1 3.6717 -2.0357 1.3918 39 1 0.9259 1.4965 0.7177 40 1 -0.3209 3.5483 1.2316 41 1 1.0418 0.5293 4.8955 42 1 -1.0939 4.0502 6.9440 43 1 0.2438 4.6355 5.9216 44 1 -2.5251 3.7982 4.9222 45 1 -1.9445 5.4762 5.0805 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987506007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:44 Heat of formation + Delta-G solvation = -20.236637 kcal Electronic energy + Delta-G solvation = -29014.021894 eV Core-core repulsion = 24999.428023 eV Total energy + Delta-G solvation = -4014.593871 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.60949 -40.51676 -37.88114 -37.54837 -37.32627 -34.50155 -32.66593 -31.59052 -31.01970 -30.68216 -29.06292 -28.41645 -25.54095 -24.97502 -23.77899 -23.18657 -22.51065 -21.33866 -20.54111 -19.64912 -18.58835 -18.13536 -17.48542 -17.36917 -16.22307 -16.07989 -15.65473 -15.49084 -15.25352 -14.81463 -14.65870 -14.44701 -14.12043 -14.00321 -13.86333 -13.66602 -13.30751 -13.23459 -12.80065 -12.67761 -12.44543 -12.13813 -11.83254 -11.59496 -11.46369 -11.39339 -11.02025 -10.91443 -10.74500 -10.67281 -10.61319 -10.22137 -10.04339 -9.85723 -9.27407 -9.01150 -8.87443 -8.52345 -8.24237 -7.17649 -6.19762 -3.22487 0.68188 1.14003 2.59498 2.80343 2.89027 3.15625 3.47768 3.50230 3.67944 3.70680 3.86014 4.33251 4.41238 4.45166 4.53601 4.59097 4.74634 4.85499 4.96637 5.00996 5.06652 5.08576 5.18163 5.27394 5.37654 5.40874 5.55459 5.61059 5.65844 5.73216 5.79232 5.90894 5.93937 6.03066 6.10519 6.16909 6.18631 6.28429 6.34018 6.44804 6.52909 6.60520 6.77931 7.12581 7.60775 7.71301 8.22710 8.64785 9.07827 9.94491 10.07137 11.27903 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.003033 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.033563 B = 9229.180726 C =10578.913602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.104 3.896 3 H 0.092 0.908 4 C 0.183 3.817 5 H 0.070 0.930 6 N -0.726 5.726 7 C -0.335 4.335 8 H 0.067 0.933 9 C -0.040 4.040 10 N -0.940 5.940 11 Si 1.079 2.921 12 H -0.294 1.294 13 H -0.295 1.295 14 H -0.285 1.285 15 C -0.155 4.155 16 C 0.107 3.893 17 N -0.601 5.601 18 C 0.578 3.422 19 O -0.546 6.546 20 C -0.133 4.133 21 C -0.110 4.110 22 C -0.127 4.127 23 C 0.077 3.923 24 C 0.031 3.969 25 C -0.052 4.052 26 O -0.306 6.306 27 C 0.020 3.980 28 C 0.019 3.981 29 O -0.304 6.304 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.368 0.632 34 H 0.255 0.745 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.183 0.817 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.122 0.878 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 2.774 17.941 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.000 4.000 3 H 0.109 0.891 4 C 0.072 3.928 5 H 0.088 0.912 6 N -0.368 5.368 7 C -0.466 4.466 8 H 0.085 0.915 9 C -0.238 4.238 10 N -0.584 5.584 11 Si 0.910 3.090 12 H -0.222 1.222 13 H -0.222 1.222 14 H -0.210 1.210 15 C -0.197 4.197 16 C -0.015 4.015 17 N -0.334 5.334 18 C 0.368 3.632 19 O -0.425 6.425 20 C -0.137 4.137 21 C -0.127 4.127 22 C -0.145 4.145 23 C 0.031 3.969 24 C -0.013 4.013 25 C -0.071 4.071 26 O -0.221 6.221 27 C -0.056 4.056 28 C -0.056 4.056 29 O -0.218 6.218 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.202 0.798 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.199 0.801 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.140 0.860 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.039 2.740 16.874 19.338 hybrid contribution -0.440 -0.010 1.893 1.943 sum -9.479 2.730 18.767 21.201 Atomic orbital electron populations 1.22663 0.94311 1.03554 1.02635 1.22392 0.94566 0.96816 0.86206 0.89125 1.21240 0.93921 0.91356 0.86329 0.91239 1.42342 1.82233 1.08314 1.03949 1.19983 1.44808 0.97064 0.84733 0.91510 1.25779 0.99331 0.94432 1.04255 1.70900 1.51482 1.15827 1.20211 0.83252 0.75943 0.74882 0.74951 1.22177 1.22186 1.21024 1.23575 1.01004 1.01894 0.93183 1.22292 0.95050 0.87841 0.96307 1.48370 1.51879 1.28616 1.04527 1.17660 0.79614 0.84685 0.81256 1.90756 1.52772 1.54119 1.44890 1.19541 1.04041 0.96886 0.93192 1.23044 0.94864 0.92148 1.02636 1.20479 1.02459 0.98271 0.93323 1.19243 0.96188 0.87728 0.93756 1.18635 1.02340 0.97323 0.83033 1.20406 0.95119 0.95046 0.96536 1.86333 1.83891 1.28769 1.23099 1.23628 0.99094 0.82554 1.00278 1.23663 0.95237 1.04716 0.82024 1.86304 1.65410 1.34835 1.35247 0.91725 0.91356 0.90447 0.79816 0.93343 0.90268 0.90707 0.91599 0.90813 0.80113 0.83979 0.83637 0.86008 0.90408 0.90310 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 7.82 37.16 0.29 -2.06 16 2 C 0.10 1.59 2.45 -66.95 -0.16 1.43 16 3 H 0.09 1.41 5.57 -51.93 -0.29 1.12 16 4 C 0.18 3.28 3.11 -66.09 -0.21 3.08 16 5 H 0.07 1.27 7.55 -51.93 -0.39 0.88 16 6 N -0.73 -16.41 5.25 -51.65 -0.27 -16.68 16 7 C -0.34 -8.72 9.98 -15.06 -0.15 -8.87 16 8 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 9 C -0.04 -1.09 5.50 -17.43 -0.10 -1.19 16 10 N -0.94 -27.55 13.70 55.49 0.76 -26.79 16 11 Si 1.08 24.71 29.92 -169.99 -5.09 19.63 16 12 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C -0.16 -2.57 6.77 -24.58 -0.17 -2.74 16 16 C 0.11 1.62 6.89 -2.53 -0.02 1.60 16 17 N -0.60 -9.42 3.06 -167.51 -0.51 -9.94 16 18 C 0.58 9.62 7.56 -12.44 -0.09 9.53 16 19 O -0.55 -10.46 16.63 5.29 0.09 -10.37 16 20 C -0.13 -1.97 5.28 -104.99 -0.55 -2.52 16 21 C -0.11 -1.46 6.52 -39.22 -0.26 -1.72 16 22 C -0.13 -1.59 9.94 -39.48 -0.39 -1.98 16 23 C 0.08 0.97 6.50 -38.92 -0.25 0.71 16 24 C 0.03 0.41 6.48 -39.18 -0.25 0.15 16 25 C -0.05 -0.73 9.50 -39.02 -0.37 -1.10 16 26 O -0.31 -3.54 10.41 -32.95 -0.34 -3.88 16 27 C 0.02 0.15 7.26 37.40 0.27 0.42 16 28 C 0.02 0.14 7.26 37.40 0.27 0.41 16 29 O -0.30 -3.39 10.41 -32.39 -0.34 -3.73 16 30 H 0.06 0.86 7.69 -51.93 -0.40 0.46 16 31 H 0.07 0.89 4.87 -51.93 -0.25 0.64 16 32 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 33 H 0.37 8.57 6.34 -40.82 -0.26 8.32 16 34 H 0.26 7.31 6.77 -40.82 -0.28 7.03 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 39 H 0.18 2.42 2.08 -56.95 -0.12 2.30 16 40 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.15 2.06 7.65 -52.49 -0.40 1.66 16 42 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -32.61 357.11 -8.28 -40.89 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -5.82 Total: 10.34 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -2.14 Total: -4.84 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.02 Total: -53.41 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.59 Total: -17.98 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.09 Total: 19.63 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.61 -8.28 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987506007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.648 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds