Wall clock time and date at job start Tue Mar 31 2020 17:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 109.99802 * 2 1 4 4 C 1.54320 * 109.87911 * 238.90094 * 2 1 3 5 5 H 1.08993 * 110.87598 * 336.82312 * 4 2 1 6 6 N 1.46510 * 110.71626 * 100.02904 * 4 2 1 7 7 C 1.36939 * 119.99743 * 199.97118 * 6 4 2 8 8 H 1.08000 * 120.00057 * 0.02562 * 7 6 4 9 9 C 1.38806 * 119.99825 * 179.97438 * 7 6 4 10 10 N 1.31619 * 119.99939 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00012 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46817 * 60.00421 * 11 9 7 13 13 H 1.48495 * 109.47245 * 300.00191 * 11 9 7 14 14 H 1.48503 * 109.46903 * 179.97438 * 11 9 7 15 15 C 1.55165 * 102.94200 * 218.38951 * 4 2 1 16 16 C 1.54909 * 101.57828 * 35.50329 * 15 4 2 17 17 N 1.47024 * 109.88080 * 121.09396 * 2 1 3 18 18 C 1.34771 * 125.64824 * 298.32457 * 17 2 1 19 19 O 1.21585 * 119.99529 * 176.75761 * 18 17 2 20 20 C 1.47603 * 120.00435 * 356.75563 * 18 17 2 21 21 C 1.39707 * 120.09549 * 354.86612 * 20 18 17 22 22 C 1.37717 * 119.96577 * 179.81187 * 21 20 18 23 23 C 1.39013 * 120.27084 * 0.53519 * 22 21 20 24 24 C 1.39257 * 120.04534 * 359.63673 * 23 22 21 25 25 C 1.38290 * 119.96055 * 0.12092 * 24 23 22 26 26 O 1.36145 * 120.76446 * 180.26984 * 24 23 22 27 27 C 1.43164 * 116.70545 * 342.85697 * 26 24 23 28 28 C 1.53458 * 108.23801 * 46.14494 * 27 26 24 29 29 O 1.35969 * 119.24128 * 179.55126 * 23 22 21 30 30 H 1.08999 * 109.46612 * 161.86041 * 1 2 3 31 31 H 1.08997 * 109.46914 * 281.85670 * 1 2 3 32 32 H 1.08994 * 109.46807 * 41.86392 * 1 2 3 33 33 H 0.96998 * 119.99961 * 19.97382 * 6 4 2 34 34 H 0.96996 * 120.00584 * 359.97438 * 10 9 7 35 35 H 1.08996 * 111.00141 * 153.58095 * 15 4 2 36 36 H 1.09008 * 111.00012 * 277.43318 * 15 4 2 37 37 H 1.09006 * 110.36468 * 81.83206 * 16 15 4 38 38 H 1.08996 * 110.36370 * 204.03993 * 16 15 4 39 39 H 1.07993 * 120.01656 * 0.08018 * 21 20 18 40 40 H 1.08004 * 119.86567 * 180.26809 * 22 21 20 41 41 H 1.08001 * 120.02799 * 179.97438 * 25 24 23 42 42 H 1.09004 * 109.71133 * 165.83013 * 27 26 24 43 43 H 1.09004 * 109.71405 * 286.40879 * 27 26 24 44 44 H 1.09001 * 109.71207 * 59.87061 * 28 27 26 45 45 H 1.09005 * 109.71088 * 180.45474 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 1.3065 -1.4459 -1.6210 6 7 2.4555 0.1961 -2.2875 7 6 2.5576 -0.2226 -3.5873 8 1 2.3423 -1.2498 -3.8423 9 6 2.9366 0.6734 -4.5773 10 7 3.1985 1.9253 -4.2667 11 14 3.0752 0.1025 -6.3506 12 1 1.7579 -0.4051 -6.8115 13 1 4.0842 -0.9830 -6.4437 14 1 3.4928 1.2421 -7.2063 15 6 3.2877 -1.5143 -0.6923 16 6 2.8145 -1.8794 0.7369 17 7 2.0301 -0.7140 1.1840 18 6 1.8085 -0.3612 2.4657 19 8 2.2232 -1.0612 3.3692 20 6 1.0626 0.8749 2.7726 21 6 0.6784 1.7356 1.7414 22 6 -0.0209 2.8863 2.0304 23 6 -0.3375 3.2019 3.3467 24 6 0.0457 2.3500 4.3795 25 6 0.7437 1.1905 4.0953 26 8 -0.2614 2.6421 5.6733 27 6 -0.6371 3.9944 5.9559 28 6 -1.6477 4.4443 4.8923 29 8 -1.0206 4.3479 3.6090 30 1 -0.3632 -0.9766 -0.3200 31 1 -0.3633 0.2111 1.0057 32 1 -0.3633 0.7653 -0.6858 33 1 2.6485 1.1187 -2.0586 34 1 3.1262 2.2219 -3.3460 35 1 3.4852 -2.4111 -1.2796 36 1 4.1655 -0.8688 -0.6603 37 1 2.1886 -2.7715 0.7129 38 1 3.6717 -2.0357 1.3918 39 1 0.9259 1.4965 0.7177 40 1 -0.3209 3.5483 1.2316 41 1 1.0418 0.5293 4.8955 42 1 -1.0939 4.0502 6.9440 43 1 0.2438 4.6355 5.9216 44 1 -2.5251 3.7982 4.9222 45 1 -1.9445 5.4762 5.0805 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987506007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:43 Heat of formation + Delta-G solvation = -41.156052 kcal Electronic energy + Delta-G solvation = -29014.929028 eV Core-core repulsion = 24999.428023 eV Total energy + Delta-G solvation = -4015.501005 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.55250 -41.68172 -39.18109 -38.48361 -38.35289 -36.27706 -33.83157 -33.19700 -32.03653 -31.58699 -30.60131 -29.40692 -26.88185 -26.05198 -24.97222 -24.85813 -23.59097 -22.35152 -21.89037 -20.80232 -19.67741 -19.33419 -18.92456 -18.35229 -17.44929 -17.28775 -16.93762 -16.50012 -16.24951 -15.98259 -15.92665 -15.52944 -15.46836 -15.09977 -15.00285 -14.97454 -14.69944 -14.36486 -14.11850 -13.76391 -13.55098 -13.39761 -13.08563 -12.76360 -12.70166 -12.68866 -12.37454 -12.19256 -12.06177 -11.88177 -11.82604 -11.72454 -11.46379 -11.29849 -11.10022 -10.87413 -9.95829 -9.73162 -9.22881 -9.09347 -8.32020 -5.28581 -0.38903 0.12915 1.56524 1.64204 1.69720 1.72827 1.88702 1.98634 2.20483 2.60935 2.75024 3.14130 3.24029 3.39415 3.50045 3.55438 3.66735 3.81116 3.88673 3.92489 3.99117 4.00888 4.14622 4.19095 4.24733 4.28618 4.40194 4.50064 4.55034 4.62125 4.64060 4.70734 4.82539 4.83790 4.93250 4.95000 5.06128 5.11567 5.17751 5.22206 5.32818 5.38421 5.67112 5.76810 6.24993 6.32645 6.56205 6.93507 7.11515 8.00813 8.11261 9.19538 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.003033 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.033563 B = 9229.180726 C =10578.913602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.114 3.886 3 H 0.089 0.911 4 C 0.178 3.822 5 H 0.073 0.927 6 N -0.736 5.736 7 C -0.325 4.325 8 H 0.071 0.929 9 C -0.099 4.099 10 N -0.976 5.976 11 Si 1.123 2.877 12 H -0.277 1.277 13 H -0.280 1.280 14 H -0.298 1.298 15 C -0.146 4.146 16 C 0.111 3.889 17 N -0.601 5.601 18 C 0.576 3.424 19 O -0.577 6.577 20 C -0.148 4.148 21 C -0.107 4.107 22 C -0.129 4.129 23 C 0.081 3.919 24 C 0.032 3.968 25 C -0.062 4.062 26 O -0.321 6.321 27 C 0.012 3.988 28 C 0.012 3.988 29 O -0.314 6.314 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.362 0.638 34 H 0.246 0.754 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.181 0.819 40 H 0.158 0.842 41 H 0.138 0.862 42 H 0.158 0.842 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.066 3.031 18.665 21.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.010 3.990 3 H 0.106 0.894 4 C 0.068 3.932 5 H 0.091 0.909 6 N -0.378 5.378 7 C -0.457 4.457 8 H 0.089 0.911 9 C -0.291 4.291 10 N -0.624 5.624 11 Si 0.949 3.051 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.224 1.224 15 C -0.187 4.187 16 C -0.011 4.011 17 N -0.332 5.332 18 C 0.368 3.632 19 O -0.459 6.459 20 C -0.151 4.151 21 C -0.124 4.124 22 C -0.148 4.148 23 C 0.034 3.966 24 C -0.013 4.013 25 C -0.081 4.081 26 O -0.236 6.236 27 C -0.062 4.062 28 C -0.062 4.062 29 O -0.228 6.228 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.195 0.805 34 H 0.057 0.943 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.197 0.803 40 H 0.175 0.825 41 H 0.156 0.844 42 H 0.175 0.825 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.597 2.966 17.636 20.787 hybrid contribution -0.030 -0.032 1.838 1.839 sum -10.627 2.933 19.474 22.378 Atomic orbital electron populations 1.22600 0.92621 1.03966 1.03239 1.22265 0.95743 0.96153 0.84804 0.89355 1.21400 0.94494 0.90985 0.86319 0.90949 1.42446 1.82512 1.08790 1.04016 1.20291 1.42346 0.96982 0.86037 0.91119 1.27001 0.99985 0.94268 1.07830 1.70992 1.54411 1.17179 1.19769 0.82672 0.76943 0.74412 0.71104 1.20334 1.20674 1.22436 1.23404 0.99546 1.01542 0.94224 1.22294 0.95412 0.88289 0.95073 1.48392 1.51701 1.28697 1.04460 1.17955 0.79324 0.84983 0.80972 1.90729 1.54267 1.55258 1.45647 1.19417 1.05127 0.96660 0.93887 1.22936 0.95033 0.92370 1.02064 1.20660 1.02010 0.98088 0.93995 1.19315 0.95720 0.87941 0.93587 1.18629 1.01824 0.96884 0.84008 1.20397 0.95877 0.95707 0.96169 1.86315 1.83795 1.31380 1.22137 1.24031 0.99565 0.80507 1.02124 1.24062 0.94893 1.07163 0.80081 1.86293 1.65169 1.33829 1.37545 0.91334 0.90658 0.89969 0.80517 0.94320 0.89558 0.92460 0.89857 0.90775 0.80303 0.82455 0.84404 0.82453 0.90112 0.89678 0.82338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.31 7.82 71.99 0.56 -3.75 16 2 C 0.11 3.42 2.45 45.34 0.11 3.53 16 3 H 0.09 2.75 5.57 -2.39 -0.01 2.74 16 4 C 0.18 6.26 3.11 46.18 0.14 6.40 16 5 H 0.07 2.54 7.55 -2.39 -0.02 2.52 16 6 N -0.74 -33.23 5.25 -317.31 -1.67 -34.90 16 7 C -0.33 -16.76 9.98 84.03 0.84 -15.92 16 8 H 0.07 3.53 7.83 -2.91 -0.02 3.51 16 9 C -0.10 -5.41 5.50 84.86 0.47 -4.95 16 10 N -0.98 -58.00 13.70 21.65 0.30 -57.71 16 11 Si 1.12 49.51 29.92 68.60 2.05 51.57 16 12 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 13 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 14 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 15 C -0.15 -4.76 6.77 31.99 0.22 -4.54 16 16 C 0.11 3.27 6.89 86.86 0.60 3.87 16 17 N -0.60 -18.57 3.06 -802.15 -2.46 -21.03 16 18 C 0.58 19.25 7.56 86.72 0.66 19.90 16 19 O -0.58 -22.38 16.63 -3.98 -0.07 -22.45 16 20 C -0.15 -4.35 5.28 -20.10 -0.11 -4.46 16 21 C -0.11 -2.79 6.52 22.50 0.15 -2.64 16 22 C -0.13 -3.08 9.94 22.33 0.22 -2.86 16 23 C 0.08 1.93 6.50 22.70 0.15 2.07 16 24 C 0.03 0.80 6.48 22.53 0.15 0.94 16 25 C -0.06 -1.76 9.50 22.63 0.22 -1.54 16 26 O -0.32 -6.96 10.41 -83.01 -0.86 -7.83 16 27 C 0.01 0.14 7.26 72.14 0.52 0.67 16 28 C 0.01 0.14 7.26 72.14 0.52 0.66 16 29 O -0.31 -6.30 10.41 -81.01 -0.84 -7.14 16 30 H 0.07 1.72 7.69 -2.39 -0.02 1.70 16 31 H 0.07 1.87 4.87 -2.39 -0.01 1.86 16 32 H 0.08 2.06 8.12 -2.39 -0.02 2.04 16 33 H 0.36 17.14 6.34 -92.71 -0.59 16.56 16 34 H 0.25 14.45 6.77 -92.71 -0.63 13.82 16 35 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 39 H 0.18 4.69 2.08 -7.11 -0.01 4.68 16 40 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 41 H 0.14 4.04 7.65 -2.91 -0.02 4.02 16 42 H 0.16 0.69 8.14 -2.38 -0.02 0.67 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.16 0.60 8.14 -2.38 -0.02 0.58 16 Total: -1.00 -70.32 357.11 2.45 -67.87 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: 0.59 Total: 34.22 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 5.41 Total: -2.61 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -3.83 Total: -113.63 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -1.77 Total: -37.41 kcal Atomic # 14 Polarization: 49.51 SS G_CDS: 2.05 Total: 51.57 kcal Total: -70.32 2.45 -67.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987506007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.714 kcal (2) G-P(sol) polarization free energy of solvation -70.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds