Wall clock time and date at job start Tue Mar 31 2020 17:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.99855 * 2 1 4 4 C 1.54330 * 109.87835 * 121.09763 * 2 1 3 5 5 C 1.55151 * 102.94102 * 141.60967 * 4 2 1 6 6 H 1.08999 * 111.03907 * 206.40644 * 5 4 2 7 7 N 1.46497 * 111.00674 * 82.57168 * 5 4 2 8 8 C 1.36938 * 120.00331 * 161.35096 * 7 5 4 9 9 H 1.07997 * 119.99927 * 359.97438 * 8 7 5 10 10 C 1.38809 * 119.99953 * 180.27212 * 8 7 5 11 11 N 1.31610 * 120.00437 * 359.72584 * 10 8 7 12 12 Si 1.86803 * 119.99844 * 179.72207 * 10 8 7 13 13 H 1.48496 * 109.47320 * 60.00336 * 12 10 8 14 14 H 1.48496 * 109.47306 * 180.02562 * 12 10 8 15 15 H 1.48509 * 109.47208 * 300.00167 * 12 10 8 16 16 C 1.54909 * 101.58562 * 324.49601 * 5 4 2 17 17 N 1.47027 * 109.88116 * 238.90323 * 2 1 3 18 18 C 1.34767 * 125.65176 * 61.61164 * 17 2 1 19 19 O 1.21583 * 120.00501 * 173.73947 * 18 17 2 20 20 C 1.47618 * 119.99929 * 353.73653 * 18 17 2 21 21 C 1.39709 * 120.09252 * 16.72696 * 20 18 17 22 22 C 1.37723 * 119.96401 * 179.82759 * 21 20 18 23 23 C 1.39008 * 120.26365 * 0.49464 * 22 21 20 24 24 C 1.39260 * 120.05163 * 359.62802 * 23 22 21 25 25 C 1.38288 * 119.95913 * 0.19354 * 24 23 22 26 26 O 1.36145 * 120.75519 * 180.43003 * 24 23 22 27 27 C 1.43165 * 116.71549 * 342.70531 * 26 24 23 28 28 C 1.53467 * 108.24217 * 46.15994 * 27 26 24 29 29 O 1.35966 * 119.23533 * 179.45914 * 23 22 21 30 30 H 1.08994 * 109.47479 * 197.54559 * 1 2 3 31 31 H 1.08995 * 109.47012 * 317.55656 * 1 2 3 32 32 H 1.09009 * 109.46639 * 77.54726 * 1 2 3 33 33 H 1.09000 * 110.72103 * 23.24471 * 4 2 1 34 34 H 1.09004 * 110.71502 * 259.97149 * 4 2 1 35 35 H 0.97003 * 120.00261 * 341.34154 * 7 5 4 36 36 H 0.97002 * 120.00853 * 179.97438 * 11 10 8 37 37 H 1.08997 * 110.37126 * 155.84737 * 16 5 4 38 38 H 1.09005 * 110.36765 * 278.06217 * 16 5 4 39 39 H 1.08000 * 120.01860 * 0.07300 * 21 20 18 40 40 H 1.08000 * 119.86652 * 180.23915 * 22 21 20 41 41 H 1.08000 * 120.02040 * 179.87417 * 25 24 23 42 42 H 1.08993 * 109.70896 * 286.46941 * 27 26 24 43 43 H 1.09003 * 109.74593 * 165.86360 * 27 26 24 44 44 H 1.09005 * 109.70853 * 180.53699 * 28 27 26 45 45 H 1.08997 * 109.71407 * 59.91533 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 1.2428 5 6 3.2875 -1.5143 0.6925 6 1 3.4857 -2.4111 1.2795 7 7 4.4673 -0.6470 0.6495 8 6 5.7188 -1.1968 0.5675 9 1 5.8360 -2.2699 0.5349 10 6 6.8370 -0.3751 0.5325 11 7 6.6942 0.9326 0.5727 12 14 8.5445 -1.1254 0.4285 13 1 8.6550 -1.9345 -0.8118 14 1 9.5605 -0.0426 0.4057 15 1 8.7756 -1.9957 1.6094 16 6 2.8145 -1.8795 -0.7367 17 7 2.0300 -0.7141 -1.1840 18 6 1.8075 -0.3621 -2.4657 19 8 2.3641 -0.9605 -3.3659 20 6 0.8880 0.7500 -2.7767 21 6 0.5217 1.6561 -1.7784 22 6 -0.3336 2.6948 -2.0723 23 6 -0.8433 2.8403 -3.3574 24 6 -0.4841 1.9390 -4.3563 25 6 0.3772 0.8961 -4.0684 26 8 -0.9679 2.0730 -5.6218 27 6 -2.1187 2.9088 -5.7858 28 6 -1.8863 4.2060 -4.9994 29 8 -1.6948 3.8668 -3.6217 30 1 -0.3634 -0.9798 0.3098 31 1 -0.3633 0.7583 0.6935 32 1 -0.3633 0.2216 -1.0036 33 1 1.3050 -1.4460 1.6183 34 1 2.3529 -0.0460 2.0201 35 1 4.3621 0.3169 0.6790 36 1 7.4756 1.5069 0.5486 37 1 3.6716 -2.0339 -1.3922 38 1 2.1902 -2.7727 -0.7131 39 1 0.9121 1.5445 -0.7777 40 1 -0.6127 3.3966 -1.3004 41 1 0.6548 0.1953 -4.8418 42 1 -3.0014 2.3985 -5.4006 43 1 -2.2590 3.1393 -6.8419 44 1 -2.7544 4.8575 -5.1002 45 1 -0.9995 4.7128 -5.3799 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989787005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:25 Heat of formation + Delta-G solvation = -21.993838 kcal Electronic energy + Delta-G solvation = -29110.530124 eV Core-core repulsion = 25095.860055 eV Total energy + Delta-G solvation = -4014.670069 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.54614 -40.32702 -37.75457 -37.49532 -37.12857 -34.31273 -32.25000 -31.31705 -31.03340 -30.64960 -29.24279 -27.86682 -25.96906 -24.96525 -23.94471 -23.16107 -22.43514 -21.17168 -20.15110 -19.43324 -18.47009 -18.00161 -17.43312 -17.22915 -16.14128 -15.84823 -15.51395 -15.31459 -15.06175 -14.68259 -14.59664 -14.34336 -14.04208 -13.98445 -13.73182 -13.47783 -13.26622 -13.06636 -12.88522 -12.66847 -12.33115 -11.89578 -11.70012 -11.60550 -11.35991 -11.27970 -10.94123 -10.84528 -10.75915 -10.70494 -10.52444 -10.32069 -10.02923 -9.70097 -9.59455 -9.00246 -8.78971 -8.25663 -8.09131 -7.00523 -5.79270 -3.09019 0.80014 1.20399 2.69609 2.89596 3.02729 3.40554 3.44918 3.49903 3.50440 3.81736 3.90820 4.39392 4.46997 4.55000 4.57223 4.64435 4.74853 4.86782 4.99257 5.04669 5.08310 5.10625 5.24655 5.39856 5.43483 5.52816 5.61839 5.65452 5.73171 5.78279 5.90510 5.97212 6.01618 6.09693 6.23385 6.25838 6.28794 6.36512 6.41539 6.58774 6.63627 6.73530 6.87502 7.18566 7.68396 7.92386 8.38310 8.52647 9.50282 10.04232 10.38630 11.42903 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.002977 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.642438 B = 9404.303065 C = 9773.520276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.120 3.880 3 H 0.086 0.914 4 C -0.136 4.136 5 C 0.168 3.832 6 H 0.072 0.928 7 N -0.711 5.711 8 C -0.245 4.245 9 H 0.072 0.928 10 C -0.009 4.009 11 N -0.930 5.930 12 Si 0.908 3.092 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.285 1.285 16 C 0.078 3.922 17 N -0.591 5.591 18 C 0.575 3.425 19 O -0.540 6.540 20 C -0.128 4.128 21 C -0.095 4.095 22 C -0.132 4.132 23 C 0.073 3.927 24 C 0.031 3.969 25 C -0.052 4.052 26 O -0.305 6.305 27 C 0.021 3.979 28 C 0.019 3.981 29 O -0.306 6.306 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.385 0.615 36 H 0.256 0.744 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.171 0.829 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.076 0.924 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.265 5.184 -5.820 23.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.016 3.984 3 H 0.104 0.896 4 C -0.175 4.175 5 C 0.055 3.945 6 H 0.090 0.910 7 N -0.351 5.351 8 C -0.376 4.376 9 H 0.090 0.910 10 C -0.205 4.205 11 N -0.578 5.578 12 Si 0.738 3.262 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.047 4.047 17 N -0.323 5.323 18 C 0.364 3.636 19 O -0.419 6.419 20 C -0.131 4.131 21 C -0.112 4.112 22 C -0.151 4.151 23 C 0.028 3.972 24 C -0.013 4.013 25 C -0.072 4.072 26 O -0.220 6.220 27 C -0.055 4.055 28 C -0.056 4.056 29 O -0.220 6.220 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.219 0.781 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.188 0.812 40 H 0.158 0.842 41 H 0.163 0.837 42 H 0.095 0.905 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.826 4.823 -6.406 23.253 hybrid contribution 0.742 0.237 -0.394 0.873 sum -21.084 5.060 -6.801 22.724 Atomic orbital electron populations 1.22912 0.95190 1.02780 1.03347 1.21929 0.93513 0.96639 0.86297 0.89640 1.23072 0.98415 1.00003 0.95969 1.21367 0.86876 0.94444 0.91784 0.91011 1.42296 1.00287 1.05099 1.87462 1.19169 0.83320 0.91842 1.43302 0.91022 1.24741 0.97961 0.95338 1.02456 1.69637 1.29168 1.01980 1.56996 0.86263 0.84166 0.77795 0.77926 1.21149 1.21715 1.21202 1.23323 0.94902 0.86286 1.00176 1.48207 1.51429 1.28686 1.03997 1.17600 0.81361 0.83032 0.81638 1.90772 1.50448 1.55402 1.45230 1.19656 1.01353 0.98445 0.93689 1.22517 0.95194 0.92056 1.01463 1.20373 0.99846 1.00442 0.94397 1.19175 0.94759 0.88498 0.94805 1.18635 1.01273 0.96772 0.84666 1.20418 0.95188 0.95310 0.96238 1.86346 1.44751 1.66765 1.24171 1.23608 0.87928 0.90952 1.03025 1.23657 1.04188 0.97167 0.80621 1.86273 1.60608 1.48526 1.26596 0.91960 0.91165 0.90469 0.90398 0.89554 0.78135 0.93391 0.89755 0.92783 0.81205 0.84217 0.83708 0.90540 0.86074 0.86039 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 7.78 37.16 0.29 -1.70 16 2 C 0.12 1.66 2.73 -66.95 -0.18 1.48 16 3 H 0.09 1.22 6.19 -51.93 -0.32 0.90 16 4 C -0.14 -1.90 6.04 -24.90 -0.15 -2.05 16 5 C 0.17 3.08 3.69 -65.79 -0.24 2.84 16 6 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 7 N -0.71 -17.03 5.27 -51.36 -0.27 -17.30 16 8 C -0.25 -6.66 9.98 -15.06 -0.15 -6.81 16 9 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 10 C -0.01 -0.24 5.50 -17.44 -0.10 -0.34 16 11 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 12 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 13 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 C 0.08 1.45 6.63 -2.53 -0.02 1.43 16 17 N -0.59 -10.31 3.07 -164.19 -0.50 -10.81 16 18 C 0.57 10.90 7.60 -12.44 -0.09 10.81 16 19 O -0.54 -12.21 16.70 5.29 0.09 -12.13 16 20 C -0.13 -2.02 5.06 -104.99 -0.53 -2.55 16 21 C -0.09 -1.24 6.21 -39.22 -0.24 -1.49 16 22 C -0.13 -1.57 9.94 -39.48 -0.39 -1.96 16 23 C 0.07 0.92 6.50 -38.92 -0.25 0.67 16 24 C 0.03 0.42 6.49 -39.18 -0.25 0.17 16 25 C -0.05 -0.79 9.50 -39.03 -0.37 -1.16 16 26 O -0.31 -3.71 10.41 -32.96 -0.34 -4.06 16 27 C 0.02 0.15 7.26 37.40 0.27 0.42 16 28 C 0.02 0.14 7.26 37.40 0.27 0.41 16 29 O -0.31 -3.34 10.41 -32.40 -0.34 -3.68 16 30 H 0.06 0.64 7.70 -51.93 -0.40 0.24 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.90 4.27 -51.92 -0.22 0.68 16 33 H 0.08 0.89 7.57 -51.93 -0.39 0.50 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.38 9.81 7.82 -40.82 -0.32 9.49 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.08 1.88 7.98 -51.93 -0.41 1.47 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.17 2.07 2.59 -52.49 -0.14 1.94 16 40 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.15 2.26 7.74 -52.49 -0.41 1.85 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 359.13 15.07 5.41 5.41 Total: -1.00 -34.44 359.13 -8.36 -42.80 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.96 Total: 9.26 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -2.15 Total: 0.17 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.05 Total: -55.22 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.59 Total: -19.86 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.44 -8.36 -42.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989787005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.809 kcal (2) G-P(sol) polarization free energy of solvation -34.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds