Wall clock time and date at job start Tue Mar 31 2020 17:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.99855 * 2 1 4 4 C 1.54330 * 109.87835 * 121.09763 * 2 1 3 5 5 C 1.55151 * 102.94102 * 141.60967 * 4 2 1 6 6 H 1.08999 * 111.03907 * 206.40644 * 5 4 2 7 7 N 1.46497 * 111.00674 * 82.57168 * 5 4 2 8 8 C 1.36938 * 120.00331 * 161.35096 * 7 5 4 9 9 H 1.07997 * 119.99927 * 359.97438 * 8 7 5 10 10 C 1.38809 * 119.99953 * 180.27212 * 8 7 5 11 11 N 1.31610 * 120.00437 * 359.72584 * 10 8 7 12 12 Si 1.86803 * 119.99844 * 179.72207 * 10 8 7 13 13 H 1.48496 * 109.47320 * 60.00336 * 12 10 8 14 14 H 1.48496 * 109.47306 * 180.02562 * 12 10 8 15 15 H 1.48509 * 109.47208 * 300.00167 * 12 10 8 16 16 C 1.54909 * 101.58562 * 324.49601 * 5 4 2 17 17 N 1.47027 * 109.88116 * 238.90323 * 2 1 3 18 18 C 1.34767 * 125.65176 * 61.61164 * 17 2 1 19 19 O 1.21583 * 120.00501 * 173.73947 * 18 17 2 20 20 C 1.47618 * 119.99929 * 353.73653 * 18 17 2 21 21 C 1.39709 * 120.09252 * 16.72696 * 20 18 17 22 22 C 1.37723 * 119.96401 * 179.82759 * 21 20 18 23 23 C 1.39008 * 120.26365 * 0.49464 * 22 21 20 24 24 C 1.39260 * 120.05163 * 359.62802 * 23 22 21 25 25 C 1.38288 * 119.95913 * 0.19354 * 24 23 22 26 26 O 1.36145 * 120.75519 * 180.43003 * 24 23 22 27 27 C 1.43165 * 116.71549 * 342.70531 * 26 24 23 28 28 C 1.53467 * 108.24217 * 46.15994 * 27 26 24 29 29 O 1.35966 * 119.23533 * 179.45914 * 23 22 21 30 30 H 1.08994 * 109.47479 * 197.54559 * 1 2 3 31 31 H 1.08995 * 109.47012 * 317.55656 * 1 2 3 32 32 H 1.09009 * 109.46639 * 77.54726 * 1 2 3 33 33 H 1.09000 * 110.72103 * 23.24471 * 4 2 1 34 34 H 1.09004 * 110.71502 * 259.97149 * 4 2 1 35 35 H 0.97003 * 120.00261 * 341.34154 * 7 5 4 36 36 H 0.97002 * 120.00853 * 179.97438 * 11 10 8 37 37 H 1.08997 * 110.37126 * 155.84737 * 16 5 4 38 38 H 1.09005 * 110.36765 * 278.06217 * 16 5 4 39 39 H 1.08000 * 120.01860 * 0.07300 * 21 20 18 40 40 H 1.08000 * 119.86652 * 180.23915 * 22 21 20 41 41 H 1.08000 * 120.02040 * 179.87417 * 25 24 23 42 42 H 1.08993 * 109.70896 * 286.46941 * 27 26 24 43 43 H 1.09003 * 109.74593 * 165.86360 * 27 26 24 44 44 H 1.09005 * 109.70853 * 180.53699 * 28 27 26 45 45 H 1.08997 * 109.71407 * 59.91533 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 1.2428 5 6 3.2875 -1.5143 0.6925 6 1 3.4857 -2.4111 1.2795 7 7 4.4673 -0.6470 0.6495 8 6 5.7188 -1.1968 0.5675 9 1 5.8360 -2.2699 0.5349 10 6 6.8370 -0.3751 0.5325 11 7 6.6942 0.9326 0.5727 12 14 8.5445 -1.1254 0.4285 13 1 8.6550 -1.9345 -0.8118 14 1 9.5605 -0.0426 0.4057 15 1 8.7756 -1.9957 1.6094 16 6 2.8145 -1.8795 -0.7367 17 7 2.0300 -0.7141 -1.1840 18 6 1.8075 -0.3621 -2.4657 19 8 2.3641 -0.9605 -3.3659 20 6 0.8880 0.7500 -2.7767 21 6 0.5217 1.6561 -1.7784 22 6 -0.3336 2.6948 -2.0723 23 6 -0.8433 2.8403 -3.3574 24 6 -0.4841 1.9390 -4.3563 25 6 0.3772 0.8961 -4.0684 26 8 -0.9679 2.0730 -5.6218 27 6 -2.1187 2.9088 -5.7858 28 6 -1.8863 4.2060 -4.9994 29 8 -1.6948 3.8668 -3.6217 30 1 -0.3634 -0.9798 0.3098 31 1 -0.3633 0.7583 0.6935 32 1 -0.3633 0.2216 -1.0036 33 1 1.3050 -1.4460 1.6183 34 1 2.3529 -0.0460 2.0201 35 1 4.3621 0.3169 0.6790 36 1 7.4756 1.5069 0.5486 37 1 3.6716 -2.0339 -1.3922 38 1 2.1902 -2.7727 -0.7131 39 1 0.9121 1.5445 -0.7777 40 1 -0.6127 3.3966 -1.3004 41 1 0.6548 0.1953 -4.8418 42 1 -3.0014 2.3985 -5.4006 43 1 -2.2590 3.1393 -6.8419 44 1 -2.7544 4.8575 -5.1002 45 1 -0.9995 4.7128 -5.3799 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989787005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:24 Heat of formation + Delta-G solvation = -46.011495 kcal Electronic energy + Delta-G solvation = -29111.571608 eV Core-core repulsion = 25095.860055 eV Total energy + Delta-G solvation = -4015.711553 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.48927 -41.53728 -39.03455 -38.44586 -38.29904 -36.03426 -33.74942 -32.66562 -32.14914 -31.69154 -30.57398 -29.08917 -27.15415 -25.86041 -25.76287 -24.46082 -23.48322 -22.14662 -21.53737 -20.63380 -19.47300 -19.24633 -19.00681 -18.29528 -17.32806 -17.14922 -16.59031 -16.47514 -16.38596 -15.95393 -15.65973 -15.44460 -15.34824 -15.23142 -14.95406 -14.86256 -14.49848 -14.40790 -14.04492 -13.69480 -13.49169 -13.23923 -13.07733 -12.85032 -12.67265 -12.55461 -12.30803 -12.26743 -12.05243 -12.01703 -11.85460 -11.64012 -11.46202 -11.37512 -11.09356 -10.98080 -9.85943 -9.62982 -9.12910 -8.96172 -7.94976 -5.22459 -0.30177 0.19243 1.45822 1.49223 1.54073 1.67705 1.84178 2.04064 2.29689 2.55504 2.66221 3.19048 3.33008 3.46505 3.59309 3.62178 3.82465 3.89878 3.95100 4.02616 4.05069 4.06464 4.22985 4.29279 4.33810 4.47830 4.54935 4.57593 4.68275 4.73755 4.77897 4.81703 4.94824 4.99105 5.01645 5.07992 5.17875 5.22286 5.26823 5.37642 5.41686 5.50540 5.53883 5.81075 6.27519 6.29782 6.55178 7.09348 7.34570 8.09660 8.31403 9.27858 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.002977 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.642438 B = 9404.303065 C = 9773.520276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.114 3.886 3 H 0.083 0.917 4 C -0.119 4.119 5 C 0.158 3.842 6 H 0.082 0.918 7 N -0.723 5.723 8 C -0.241 4.241 9 H 0.076 0.924 10 C -0.073 4.073 11 N -0.966 5.966 12 Si 0.967 3.033 13 H -0.287 1.287 14 H -0.297 1.297 15 H -0.272 1.272 16 C 0.082 3.918 17 N -0.593 5.593 18 C 0.564 3.436 19 O -0.596 6.596 20 C -0.148 4.148 21 C -0.085 4.085 22 C -0.126 4.126 23 C 0.080 3.920 24 C 0.028 3.972 25 C -0.070 4.070 26 O -0.326 6.326 27 C 0.012 3.988 28 C 0.013 3.987 29 O -0.310 6.310 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.374 0.626 36 H 0.250 0.750 37 H 0.035 0.965 38 H 0.081 0.919 39 H 0.182 0.818 40 H 0.171 0.829 41 H 0.125 0.875 42 H 0.085 0.915 43 H 0.154 0.846 44 H 0.162 0.838 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.242 6.297 -4.618 26.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.012 3.988 3 H 0.100 0.900 4 C -0.158 4.158 5 C 0.048 3.952 6 H 0.100 0.900 7 N -0.362 5.362 8 C -0.373 4.373 9 H 0.094 0.906 10 C -0.265 4.265 11 N -0.616 5.616 12 Si 0.796 3.204 13 H -0.214 1.214 14 H -0.223 1.223 15 H -0.198 1.198 16 C -0.043 4.043 17 N -0.323 5.323 18 C 0.355 3.645 19 O -0.479 6.479 20 C -0.151 4.151 21 C -0.103 4.103 22 C -0.144 4.144 23 C 0.033 3.967 24 C -0.017 4.017 25 C -0.090 4.090 26 O -0.242 6.242 27 C -0.062 4.062 28 C -0.061 4.061 29 O -0.224 6.224 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.134 0.866 34 H 0.109 0.891 35 H 0.206 0.794 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.198 0.802 40 H 0.189 0.811 41 H 0.143 0.857 42 H 0.103 0.897 43 H 0.171 0.829 44 H 0.180 0.820 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.865 5.913 -5.172 26.076 hybrid contribution 1.508 -0.087 -0.870 1.743 sum -23.357 5.826 -6.042 24.820 Atomic orbital electron populations 1.22827 0.91986 1.04644 1.03771 1.22209 0.95970 0.95995 0.84624 0.89970 1.23049 0.96711 1.00213 0.95787 1.21646 0.86901 0.94803 0.91898 0.90002 1.42456 1.01067 1.05204 1.87473 1.19566 0.84819 0.92112 1.40762 0.90606 1.25482 1.01401 0.95838 1.03811 1.69779 1.29425 1.03042 1.59375 0.85312 0.80161 0.76872 0.78023 1.21412 1.22313 1.19760 1.23154 0.94077 0.88107 0.98985 1.48351 1.50784 1.28489 1.04699 1.18223 0.81349 0.83416 0.81523 1.90721 1.52768 1.57528 1.46848 1.19437 1.02207 0.98659 0.94822 1.22561 0.95057 0.91567 1.01093 1.20681 0.98725 1.00082 0.94917 1.19310 0.94246 0.88427 0.94670 1.18605 1.00971 0.96433 0.85673 1.20338 0.96578 0.96186 0.95883 1.86318 1.46455 1.67952 1.23438 1.24029 0.86492 0.90441 1.05280 1.24036 1.05977 0.97460 0.78666 1.86272 1.59689 1.47499 1.28942 0.90840 0.87853 0.91363 0.86606 0.89055 0.79351 0.94151 0.94668 0.90099 0.80166 0.81141 0.85665 0.89698 0.82862 0.82045 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 7.78 71.98 0.56 -2.61 16 2 C 0.11 2.97 2.73 45.34 0.12 3.09 16 3 H 0.08 2.22 6.19 -2.39 -0.01 2.21 16 4 C -0.12 -3.01 6.04 31.78 0.19 -2.82 16 5 C 0.16 5.69 3.69 46.38 0.17 5.86 16 6 H 0.08 2.80 8.13 -2.39 -0.02 2.79 16 7 N -0.72 -35.05 5.27 -316.40 -1.67 -36.72 16 8 C -0.24 -13.27 9.98 84.03 0.84 -12.43 16 9 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 10 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 11 N -0.97 -59.27 13.06 21.65 0.28 -58.99 16 12 Si 0.97 47.11 29.55 68.60 2.03 49.14 16 13 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 14 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 15 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 16 C 0.08 3.10 6.63 86.85 0.58 3.68 16 17 N -0.59 -20.92 3.07 -791.64 -2.43 -23.35 16 18 C 0.56 22.50 7.60 86.72 0.66 23.16 16 19 O -0.60 -29.14 16.70 -3.98 -0.07 -29.21 16 20 C -0.15 -4.80 5.06 -20.10 -0.10 -4.90 16 21 C -0.09 -2.13 6.21 22.50 0.14 -1.99 16 22 C -0.13 -2.67 9.94 22.33 0.22 -2.45 16 23 C 0.08 1.85 6.50 22.70 0.15 2.00 16 24 C 0.03 0.76 6.49 22.53 0.15 0.90 16 25 C -0.07 -2.24 9.50 22.63 0.21 -2.02 16 26 O -0.33 -7.73 10.41 -82.99 -0.86 -8.59 16 27 C 0.01 0.15 7.26 72.14 0.52 0.67 16 28 C 0.01 0.15 7.26 72.14 0.52 0.67 16 29 O -0.31 -5.80 10.41 -80.96 -0.84 -6.65 16 30 H 0.07 1.20 7.70 -2.39 -0.02 1.19 16 31 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.43 4.27 -2.38 -0.01 1.42 16 33 H 0.12 2.10 7.57 -2.39 -0.02 2.08 16 34 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.37 19.45 7.82 -92.71 -0.72 18.72 16 36 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 37 H 0.03 1.66 7.98 -2.39 -0.02 1.64 16 38 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 39 H 0.18 4.03 2.59 -2.91 -0.01 4.02 16 40 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.13 4.34 7.74 -2.91 -0.02 4.32 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.15 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.16 0.51 8.14 -2.38 -0.02 0.49 16 45 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -80.04 359.13 2.16 -77.88 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.31 Total: 29.43 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 5.40 Total: 7.06 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -3.81 Total: -119.06 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -1.77 Total: -44.45 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -80.04 2.16 -77.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989787005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.871 kcal (2) G-P(sol) polarization free energy of solvation -80.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds