Wall clock time and date at job start Tue Mar 31 2020 17:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.87107 * 2 1 4 4 C 1.54324 * 109.87929 * 238.99200 * 2 1 3 5 5 C 1.55163 * 102.93834 * 218.38553 * 4 2 1 6 6 H 1.08997 * 111.00146 * 153.61412 * 5 4 2 7 7 N 1.46494 * 111.00296 * 277.42704 * 5 4 2 8 8 C 1.36938 * 119.99916 * 205.00173 * 7 5 4 9 9 H 1.07992 * 120.00237 * 0.02562 * 8 7 5 10 10 C 1.38817 * 120.00129 * 180.02562 * 8 7 5 11 11 N 1.31616 * 119.99840 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00020 * 179.97438 * 10 8 7 13 13 H 1.48510 * 109.47249 * 270.00027 * 12 10 8 14 14 H 1.48494 * 109.47657 * 29.99742 * 12 10 8 15 15 H 1.48497 * 109.47137 * 150.00425 * 12 10 8 16 16 C 1.54910 * 101.58251 * 35.50132 * 5 4 2 17 17 N 1.47022 * 109.88703 * 121.17850 * 2 1 3 18 18 C 1.34775 * 125.64692 * 298.31593 * 17 2 1 19 19 O 1.21586 * 119.99741 * 181.62287 * 18 17 2 20 20 C 1.47608 * 120.00067 * 1.62535 * 18 17 2 21 21 C 1.39696 * 120.09666 * 351.10025 * 20 18 17 22 22 C 1.37730 * 119.96461 * 179.76915 * 21 20 18 23 23 C 1.39005 * 120.26577 * 0.55725 * 22 21 20 24 24 C 1.39264 * 120.05212 * 359.60994 * 23 22 21 25 25 C 1.38295 * 119.95247 * 0.17480 * 24 23 22 26 26 O 1.36140 * 120.76277 * 180.42830 * 24 23 22 27 27 C 1.43177 * 116.70554 * 342.78092 * 26 24 23 28 28 C 1.53465 * 108.23888 * 46.15625 * 27 26 24 29 29 O 1.35967 * 119.23557 * 179.55619 * 23 22 21 30 30 H 1.09002 * 109.46568 * 168.42166 * 1 2 3 31 31 H 1.09001 * 109.46831 * 288.41061 * 1 2 3 32 32 H 1.08997 * 109.47551 * 48.41480 * 1 2 3 33 33 H 1.09000 * 110.72455 * 100.02541 * 4 2 1 34 34 H 1.09001 * 110.87484 * 336.81399 * 4 2 1 35 35 H 0.97000 * 120.00115 * 25.00220 * 7 5 4 36 36 H 0.96999 * 120.00490 * 0.02562 * 11 10 8 37 37 H 1.08999 * 110.36381 * 81.82559 * 16 5 4 38 38 H 1.08996 * 110.36380 * 204.15284 * 16 5 4 39 39 H 1.08001 * 120.01788 * 0.05567 * 21 20 18 40 40 H 1.07997 * 119.86584 * 180.25371 * 22 21 20 41 41 H 1.07995 * 120.01788 * 179.84184 * 25 24 23 42 42 H 1.09004 * 109.71817 * 286.45992 * 27 26 24 43 43 H 1.09001 * 109.73948 * 165.86131 * 27 26 24 44 44 H 1.09003 * 109.70977 * 180.51053 * 28 27 26 45 45 H 1.08990 * 109.71122 * 59.88361 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7476 -1.2439 5 6 3.2877 -1.5131 -0.6947 6 1 3.4856 -2.4087 -1.2837 7 7 4.4674 -0.6457 -0.6505 8 6 5.7217 -1.1928 -0.7007 9 1 5.8413 -2.2636 -0.7733 10 6 6.8396 -0.3709 -0.6582 11 7 6.6939 0.9342 -0.5702 12 14 8.5506 -1.1172 -0.7260 13 1 9.0191 -1.4075 0.6531 14 1 8.5104 -2.3774 -1.5105 15 1 9.4829 -0.1601 -1.3741 16 6 2.8146 -1.8804 0.7340 17 7 2.0302 -0.7158 1.1829 18 6 1.8088 -0.3647 2.4651 19 8 2.2983 -1.0169 3.3671 20 6 0.9722 0.8114 2.7745 21 6 0.5628 1.6687 1.7504 22 6 -0.2218 2.7626 2.0415 23 6 -0.5993 3.0249 3.3533 24 6 -0.1916 2.1760 4.3793 25 6 0.5926 1.0735 4.0928 26 8 -0.5602 2.4143 5.6681 27 6 -1.0365 3.7307 5.9682 28 6 -2.0403 4.1377 4.8811 29 8 -1.3666 4.1157 3.6181 30 1 -0.3632 -1.0068 -0.2063 31 1 -0.3633 0.3246 0.9751 32 1 -0.3634 0.6821 -0.7686 33 1 2.3529 -0.0430 -2.0202 34 1 1.3065 -1.4435 -1.6232 35 1 4.3600 0.3161 -0.5856 36 1 5.8054 1.3218 -0.5347 37 1 2.1888 -2.7724 0.7087 38 1 3.6718 -2.0357 1.3891 39 1 0.8574 1.4712 0.7303 40 1 -0.5408 3.4221 1.2480 41 1 0.9115 0.4160 4.8880 42 1 -0.2010 4.4308 5.9780 43 1 -1.5279 3.7315 6.9412 44 1 -2.4122 5.1425 5.0818 45 1 -2.8720 3.4335 4.8664 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989787006.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:32 Heat of formation + Delta-G solvation = -39.976004 kcal Electronic energy + Delta-G solvation = -29161.258126 eV Core-core repulsion = 25145.808291 eV Total energy + Delta-G solvation = -4015.449834 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 5.14 seconds Orbital eigenvalues (eV) -42.54979 -41.63768 -39.13752 -38.51223 -38.33960 -36.38055 -33.90502 -32.77136 -32.14863 -31.71114 -30.47901 -29.04426 -27.27235 -25.86962 -25.65033 -24.56705 -23.53909 -22.20872 -21.73521 -20.71818 -19.53992 -19.44943 -19.07741 -18.34581 -17.39218 -17.15146 -16.86478 -16.49892 -16.26943 -15.99643 -15.96452 -15.63726 -15.47294 -15.23963 -14.99911 -14.93301 -14.48575 -14.45487 -14.13123 -13.70443 -13.51715 -13.28260 -13.09888 -12.80919 -12.68332 -12.57980 -12.27315 -12.23283 -12.05763 -11.86842 -11.73653 -11.58685 -11.46955 -11.23725 -11.13339 -11.01437 -9.91562 -9.69873 -9.19841 -9.07459 -8.38628 -5.32919 -0.36094 0.14099 1.57436 1.61518 1.67582 1.77962 1.81273 2.01524 2.24418 2.61937 2.70104 3.15338 3.30331 3.41846 3.51059 3.56163 3.70275 3.75955 3.91644 3.96523 3.97924 4.01943 4.15253 4.21291 4.25721 4.38925 4.50447 4.54639 4.59709 4.63543 4.70702 4.73726 4.86467 4.93026 4.95161 4.99462 5.09603 5.13405 5.18935 5.31073 5.34779 5.43033 5.62248 5.77456 6.25976 6.46027 6.50350 7.01837 7.08805 7.98950 8.08729 9.13024 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016989 B = 0.003022 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.726085 B = 9263.214508 C = 9706.646144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.111 3.889 3 H 0.085 0.915 4 C -0.122 4.122 5 C 0.163 3.837 6 H 0.083 0.917 7 N -0.735 5.735 8 C -0.329 4.329 9 H 0.069 0.931 10 C -0.104 4.104 11 N -0.975 5.975 12 Si 1.126 2.874 13 H -0.295 1.295 14 H -0.268 1.268 15 H -0.292 1.292 16 C 0.084 3.916 17 N -0.593 5.593 18 C 0.563 3.437 19 O -0.595 6.595 20 C -0.151 4.151 21 C -0.096 4.096 22 C -0.127 4.127 23 C 0.081 3.919 24 C 0.027 3.973 25 C -0.070 4.070 26 O -0.325 6.325 27 C 0.010 3.990 28 C 0.015 3.985 29 O -0.310 6.310 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.360 0.640 36 H 0.244 0.756 37 H 0.082 0.918 38 H 0.033 0.967 39 H 0.192 0.808 40 H 0.172 0.828 41 H 0.125 0.875 42 H 0.078 0.922 43 H 0.156 0.844 44 H 0.161 0.839 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.437 6.469 4.664 25.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.009 3.991 3 H 0.103 0.897 4 C -0.160 4.160 5 C 0.053 3.947 6 H 0.101 0.899 7 N -0.375 5.375 8 C -0.461 4.461 9 H 0.087 0.913 10 C -0.296 4.296 11 N -0.623 5.623 12 Si 0.952 3.048 13 H -0.222 1.222 14 H -0.193 1.193 15 H -0.218 1.218 16 C -0.042 4.042 17 N -0.324 5.324 18 C 0.355 3.645 19 O -0.478 6.478 20 C -0.154 4.154 21 C -0.113 4.113 22 C -0.145 4.145 23 C 0.035 3.965 24 C -0.017 4.017 25 C -0.089 4.089 26 O -0.241 6.241 27 C -0.065 4.065 28 C -0.059 4.059 29 O -0.225 6.225 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.108 0.892 34 H 0.134 0.866 35 H 0.192 0.808 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.052 0.948 39 H 0.208 0.792 40 H 0.190 0.810 41 H 0.143 0.857 42 H 0.096 0.904 43 H 0.174 0.826 44 H 0.178 0.822 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.579 6.273 5.193 24.003 hybrid contribution -1.161 -0.145 0.907 1.480 sum -23.740 6.128 6.100 25.266 Atomic orbital electron populations 1.22909 0.91783 1.04682 1.04291 1.22235 0.96167 0.96028 0.84673 0.89725 1.23077 0.96843 1.00319 0.95760 1.21573 0.86576 0.94628 0.91963 0.89877 1.42480 1.01718 1.04740 1.88571 1.20411 0.86059 0.93583 1.46024 0.91309 1.27088 1.06441 0.95319 1.00709 1.70962 1.23852 1.11422 1.56027 0.82634 0.71335 0.74423 0.76431 1.22239 1.19295 1.21836 1.23132 0.93987 0.88306 0.98772 1.48367 1.50843 1.28464 1.04733 1.18236 0.80452 0.84377 0.81455 1.90720 1.53852 1.56638 1.46592 1.19423 1.03797 0.97837 0.94325 1.22906 0.94645 0.91815 1.01968 1.20716 1.01261 0.98601 0.93921 1.19338 0.94671 0.88841 0.93666 1.18619 1.00989 0.97813 0.84326 1.20360 0.95676 0.96691 0.96217 1.86315 1.80516 1.34065 1.23163 1.24044 0.98685 0.81846 1.01884 1.24041 0.93997 1.07413 0.80496 1.86281 1.59810 1.37314 1.39051 0.90958 0.90889 0.87390 0.89162 0.86551 0.80760 0.94546 0.90036 0.94793 0.79218 0.81047 0.85670 0.90384 0.82609 0.82172 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.18 7.81 71.98 0.56 -2.61 16 2 C 0.11 2.85 2.72 45.34 0.12 2.97 16 3 H 0.09 2.22 6.24 -2.39 -0.01 2.21 16 4 C -0.12 -3.07 6.07 31.78 0.19 -2.88 16 5 C 0.16 5.95 3.72 46.39 0.17 6.12 16 6 H 0.08 2.94 8.09 -2.39 -0.02 2.92 16 7 N -0.73 -35.69 5.23 -316.38 -1.66 -37.34 16 8 C -0.33 -18.34 9.96 84.03 0.84 -17.50 16 9 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 10 C -0.10 -6.09 5.50 84.86 0.47 -5.63 16 11 N -0.97 -61.44 13.70 21.65 0.30 -61.15 16 12 Si 1.13 53.12 29.92 68.60 2.05 55.18 16 13 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 15 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 16 C 0.08 3.17 6.61 86.86 0.57 3.74 16 17 N -0.59 -20.84 3.06 -798.61 -2.45 -23.28 16 18 C 0.56 22.40 7.65 86.72 0.66 23.07 16 19 O -0.60 -28.88 16.62 -3.99 -0.07 -28.95 16 20 C -0.15 -4.89 5.32 -20.11 -0.11 -5.00 16 21 C -0.10 -2.38 6.18 22.50 0.14 -2.24 16 22 C -0.13 -2.69 9.94 22.33 0.22 -2.47 16 23 C 0.08 1.90 6.50 22.70 0.15 2.05 16 24 C 0.03 0.75 6.49 22.53 0.15 0.90 16 25 C -0.07 -2.25 9.50 22.63 0.21 -2.04 16 26 O -0.33 -7.82 10.42 -82.95 -0.86 -8.68 16 27 C 0.01 0.13 7.26 72.14 0.52 0.65 16 28 C 0.01 0.16 7.26 72.14 0.52 0.68 16 29 O -0.31 -5.85 10.41 -80.99 -0.84 -6.69 16 30 H 0.07 1.20 7.88 -2.39 -0.02 1.18 16 31 H 0.07 1.47 4.21 -2.53 -0.01 1.46 16 32 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.12 2.13 7.68 -2.39 -0.02 2.12 16 35 H 0.36 18.36 6.70 -92.71 -0.62 17.74 16 36 H 0.24 15.26 6.77 -92.71 -0.63 14.63 16 37 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.03 1.61 8.02 -2.39 -0.02 1.59 16 39 H 0.19 4.11 2.15 -5.69 -0.01 4.09 16 40 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 41 H 0.13 4.42 7.67 -2.91 -0.02 4.40 16 42 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 43 H 0.16 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.16 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -82.55 357.44 2.43 -80.12 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.55 Total: 30.99 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 5.40 Total: -0.18 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -3.81 Total: -121.77 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -1.77 Total: -44.33 kcal Atomic # 14 Polarization: 53.12 SS G_CDS: 2.05 Total: 55.18 kcal Total: -82.55 2.43 -80.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989787006.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.142 kcal (2) G-P(sol) polarization free energy of solvation -82.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.14 seconds