Wall clock time and date at job start Tue Mar 31 2020 17:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.00100 * 2 1 4 4 C 1.54331 * 109.88219 * 121.09143 * 2 1 3 5 5 C 1.55148 * 102.94230 * 141.61158 * 4 2 1 6 6 H 1.09002 * 111.00645 * 82.57689 * 5 4 2 7 7 N 1.46509 * 111.00562 * 206.38935 * 5 4 2 8 8 C 1.36935 * 120.00088 * 205.00242 * 7 5 4 9 9 H 1.07997 * 119.99768 * 359.97438 * 8 7 5 10 10 C 1.38806 * 119.99701 * 179.97438 * 8 7 5 11 11 N 1.31622 * 120.00285 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99888 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47017 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47094 * 119.99876 * 12 10 8 15 15 H 1.48499 * 109.47263 * 239.99845 * 12 10 8 16 16 C 1.55135 * 101.48800 * 324.33256 * 5 4 2 17 17 N 1.47016 * 109.88479 * 238.90065 * 2 1 3 18 18 C 1.34772 * 125.64901 * 61.61120 * 17 2 1 19 19 O 1.21585 * 119.99912 * 5.76401 * 18 17 2 20 20 C 1.47615 * 119.99928 * 185.77089 * 18 17 2 21 21 C 1.39692 * 120.09911 * 24.58004 * 20 18 17 22 22 C 1.37725 * 119.96914 * 180.09216 * 21 20 18 23 23 C 1.39017 * 120.26820 * 0.02562 * 22 21 20 24 24 C 1.39256 * 120.04027 * 359.84601 * 23 22 21 25 25 C 1.38289 * 119.96564 * 0.20918 * 24 23 22 26 26 O 1.36148 * 120.75504 * 180.48627 * 24 23 22 27 27 C 1.43229 * 116.65335 * 342.38668 * 26 24 23 28 28 C 1.53461 * 108.17451 * 46.42275 * 27 26 24 29 29 O 1.35965 * 119.24641 * 179.61801 * 23 22 21 30 30 H 1.08992 * 109.47042 * 179.64378 * 1 2 3 31 31 H 1.09000 * 109.47467 * 299.64682 * 1 2 3 32 32 H 1.09005 * 109.46605 * 59.64555 * 1 2 3 33 33 H 1.09000 * 110.72191 * 259.98150 * 4 2 1 34 34 H 1.09000 * 110.71369 * 23.06782 * 4 2 1 35 35 H 0.97000 * 119.99788 * 24.99968 * 7 5 4 36 36 H 0.96997 * 119.99869 * 179.97438 * 11 10 8 37 37 H 1.08993 * 110.49910 * 278.45600 * 16 5 4 38 38 H 1.08998 * 110.34221 * 156.05623 * 16 5 4 39 39 H 1.07998 * 120.02127 * 0.06129 * 21 20 18 40 40 H 1.07996 * 119.86876 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.02374 * 179.90220 * 25 24 23 42 42 H 1.08994 * 109.79191 * 286.72630 * 27 26 24 43 43 H 1.08998 * 109.71794 * 166.07753 * 27 26 24 44 44 H 1.09002 * 109.70155 * 180.47172 * 28 27 26 45 45 H 1.09002 * 109.70380 * 59.86852 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2428 5 6 3.2876 -1.5142 0.6926 6 1 4.1654 -0.8688 0.6606 7 7 3.5537 -2.7191 1.4825 8 6 4.8170 -3.2456 1.5236 9 1 5.6172 -2.7730 0.9734 10 6 5.0692 -4.3869 2.2724 11 7 4.0940 -4.9626 2.9433 12 14 6.7925 -5.1057 2.3279 13 1 7.7010 -4.2783 1.4941 14 1 7.2795 -5.1160 3.7308 15 1 6.7668 -6.4944 1.8026 16 6 2.8099 -1.8826 -0.7367 17 7 2.0300 -0.7141 -1.1838 18 6 1.8075 -0.3621 -2.4656 19 8 1.2321 0.6785 -2.7191 20 6 2.2623 -1.2401 -3.5616 21 6 2.4422 -2.6068 -3.3357 22 6 2.8685 -3.4232 -4.3597 23 6 3.1216 -2.8928 -5.6196 24 6 2.9416 -1.5316 -5.8519 25 6 2.5150 -0.7065 -4.8275 26 8 3.1758 -0.9985 -7.0826 27 6 3.9634 -1.7848 -7.9842 28 6 3.4329 -3.2244 -7.9526 29 8 3.5491 -3.7164 -6.6134 30 1 -0.3633 -1.0276 -0.0064 31 1 -0.3634 0.5083 0.8931 32 1 -0.3633 0.5194 -0.8869 33 1 2.3528 -0.0459 2.0202 34 1 1.3038 -1.4435 1.6202 35 1 2.8349 -3.1438 1.9763 36 1 4.2702 -5.7604 3.4662 37 1 2.1802 -2.7718 -0.7113 38 1 3.6656 -2.0412 -1.3930 39 1 2.2477 -3.0231 -2.3584 40 1 3.0066 -4.4797 -4.1834 41 1 2.3766 0.3496 -5.0062 42 1 5.0073 -1.7707 -7.6708 43 1 3.8772 -1.3833 -8.9939 44 1 4.0216 -3.8478 -8.6255 45 1 2.3871 -3.2375 -8.2594 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989787007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:50 Heat of formation + Delta-G solvation = -53.838616 kcal Electronic energy + Delta-G solvation = -28706.697500 eV Core-core repulsion = 24690.646538 eV Total energy + Delta-G solvation = -4016.050962 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 7.96 seconds Orbital eigenvalues (eV) -41.48135 -40.13725 -37.85447 -37.49089 -36.98686 -34.23794 -32.34033 -31.42846 -30.93417 -30.82537 -28.66585 -28.38426 -25.77836 -25.09080 -24.03678 -23.42727 -22.13362 -21.00231 -20.37445 -19.37978 -18.48776 -17.80921 -17.47648 -17.29823 -16.37861 -15.91410 -15.47958 -15.39741 -15.11516 -14.65436 -14.58686 -14.09725 -14.04832 -13.96435 -13.78604 -13.52718 -13.25605 -13.18247 -12.68328 -12.59624 -12.42628 -12.13470 -11.89319 -11.61602 -11.36258 -11.31987 -11.16503 -11.00935 -10.78485 -10.65159 -10.64161 -10.29154 -10.04162 -9.82568 -9.72217 -9.05615 -8.81695 -8.39365 -8.21721 -7.12520 -5.88767 -3.19724 0.78327 1.19663 2.68691 2.84186 2.94228 3.27575 3.37327 3.44298 3.45641 3.74574 3.90836 4.38664 4.46129 4.48623 4.55879 4.63498 4.87327 4.99289 5.06209 5.11045 5.12449 5.20756 5.25306 5.29170 5.48192 5.55787 5.64756 5.67179 5.76581 5.81209 5.91840 5.97157 6.06850 6.11987 6.16056 6.24859 6.32132 6.36816 6.42657 6.47174 6.63199 6.69131 6.80153 7.17592 7.61445 7.76702 8.28235 8.34570 9.41070 9.93876 10.28967 11.33097 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010129 B = 0.003644 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.761643 B = 7681.860574 C = 9951.070329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.074 0.926 4 C -0.138 4.138 5 C 0.172 3.828 6 H 0.069 0.931 7 N -0.711 5.711 8 C -0.249 4.249 9 H 0.073 0.927 10 C -0.007 4.007 11 N -0.929 5.929 12 Si 0.907 3.093 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.290 1.290 16 C 0.067 3.933 17 N -0.603 5.603 18 C 0.576 3.424 19 O -0.547 6.547 20 C -0.125 4.125 21 C -0.083 4.083 22 C -0.119 4.119 23 C 0.072 3.928 24 C 0.035 3.965 25 C -0.056 4.056 26 O -0.306 6.306 27 C 0.020 3.980 28 C 0.020 3.980 29 O -0.304 6.304 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.387 0.613 36 H 0.256 0.744 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.155 0.845 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.078 0.922 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.837 5.496 -18.503 19.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.092 0.908 4 C -0.177 4.177 5 C 0.059 3.941 6 H 0.087 0.913 7 N -0.350 5.350 8 C -0.380 4.380 9 H 0.091 0.909 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.737 3.263 13 H -0.204 1.204 14 H -0.218 1.218 15 H -0.217 1.217 16 C -0.059 4.059 17 N -0.336 5.336 18 C 0.365 3.635 19 O -0.427 6.427 20 C -0.128 4.128 21 C -0.102 4.102 22 C -0.138 4.138 23 C 0.027 3.973 24 C -0.009 4.009 25 C -0.076 4.076 26 O -0.221 6.221 27 C -0.056 4.056 28 C -0.056 4.056 29 O -0.218 6.218 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.222 0.778 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.172 0.828 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.096 0.904 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.931 5.993 -18.738 20.062 hybrid contribution 0.818 -0.823 -0.123 1.167 sum -3.112 5.170 -18.861 19.802 Atomic orbital electron populations 1.22127 0.95097 1.02236 1.02410 1.21533 0.94186 0.96271 0.84448 0.90806 1.23060 0.99192 0.99715 0.95723 1.21370 0.94774 0.89507 0.88434 0.91253 1.42329 1.09644 1.27771 1.55270 1.19302 0.86848 1.06910 1.24918 0.90862 1.24757 0.97611 0.98293 0.99706 1.69666 1.30781 1.22310 1.34836 0.86133 0.83890 0.78884 0.77350 1.20435 1.21766 1.21747 1.23838 0.94572 0.87431 1.00046 1.48471 1.51842 1.28920 1.04327 1.17708 0.79326 0.85011 0.81407 1.90743 1.43619 1.24756 1.83551 1.19583 1.05523 0.94101 0.93620 1.21783 0.96046 0.92256 1.00073 1.20442 1.02252 1.01233 0.89875 1.19177 1.00195 0.87881 0.90086 1.18647 1.05205 0.90467 0.86609 1.20368 0.98076 1.00172 0.88935 1.86351 1.69271 1.44846 1.21621 1.23634 0.95382 0.91565 0.94992 1.23652 1.03137 0.96082 0.82731 1.86294 1.79601 1.41657 1.14270 0.92448 0.91742 0.91777 0.90258 0.90321 0.77819 0.93362 0.90902 0.90612 0.82779 0.83965 0.83830 0.90367 0.86038 0.85996 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.10 37.16 0.34 -1.82 16 2 C 0.14 2.03 3.43 -66.95 -0.23 1.81 16 3 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.14 -2.09 6.12 -24.90 -0.15 -2.24 16 5 C 0.17 3.11 3.73 -65.66 -0.24 2.86 16 6 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 7 N -0.71 -16.18 5.24 -51.23 -0.27 -16.44 16 8 C -0.25 -6.41 9.96 -15.06 -0.15 -6.56 16 9 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 10 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 11 N -0.93 -26.48 13.06 55.49 0.72 -25.76 16 12 Si 0.91 21.35 29.55 -169.99 -5.02 16.32 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 C 0.07 1.09 4.69 -2.40 -0.01 1.08 16 17 N -0.60 -9.48 3.06 -164.06 -0.50 -9.99 16 18 C 0.58 9.59 7.38 -12.44 -0.09 9.50 16 19 O -0.55 -10.32 15.86 5.29 0.08 -10.24 16 20 C -0.12 -1.88 5.67 -104.99 -0.60 -2.47 16 21 C -0.08 -1.15 8.05 -39.23 -0.32 -1.47 16 22 C -0.12 -1.56 9.94 -39.48 -0.39 -1.95 16 23 C 0.07 0.94 6.51 -38.91 -0.25 0.69 16 24 C 0.04 0.47 6.48 -39.18 -0.25 0.22 16 25 C -0.06 -0.81 9.50 -39.03 -0.37 -1.18 16 26 O -0.31 -3.62 10.42 -32.97 -0.34 -3.97 16 27 C 0.02 0.15 7.26 37.40 0.27 0.42 16 28 C 0.02 0.14 7.25 37.40 0.27 0.42 16 29 O -0.30 -3.52 10.40 -32.39 -0.34 -3.86 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.95 7.08 -51.93 -0.37 0.58 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.20 7.72 -51.93 -0.40 0.80 16 35 H 0.39 9.39 7.77 -40.82 -0.32 9.07 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 37 H 0.07 1.20 6.83 -51.93 -0.35 0.85 16 38 H 0.08 1.25 6.81 -51.93 -0.35 0.89 16 39 H 0.15 2.11 4.58 -52.49 -0.24 1.87 16 40 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 41 H 0.14 2.04 7.84 -52.49 -0.41 1.63 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 365.55 15.07 5.51 5.51 Total: -1.00 -31.28 365.55 -8.65 -39.93 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.22 Total: 9.47 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.28 Total: -0.99 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.05 Total: -52.19 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.60 Total: -18.06 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.28 -8.65 -39.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989787007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.906 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.96 seconds