Wall clock time and date at job start Tue Mar 31 2020 17:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.00100 * 2 1 4 4 C 1.54331 * 109.88219 * 121.09143 * 2 1 3 5 5 C 1.55148 * 102.94230 * 141.61158 * 4 2 1 6 6 H 1.09002 * 111.00645 * 82.57689 * 5 4 2 7 7 N 1.46509 * 111.00562 * 206.38935 * 5 4 2 8 8 C 1.36935 * 120.00088 * 205.00242 * 7 5 4 9 9 H 1.07997 * 119.99768 * 359.97438 * 8 7 5 10 10 C 1.38806 * 119.99701 * 179.97438 * 8 7 5 11 11 N 1.31622 * 120.00285 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99888 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47017 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47094 * 119.99876 * 12 10 8 15 15 H 1.48499 * 109.47263 * 239.99845 * 12 10 8 16 16 C 1.55135 * 101.48800 * 324.33256 * 5 4 2 17 17 N 1.47016 * 109.88479 * 238.90065 * 2 1 3 18 18 C 1.34772 * 125.64901 * 61.61120 * 17 2 1 19 19 O 1.21585 * 119.99912 * 5.76401 * 18 17 2 20 20 C 1.47615 * 119.99928 * 185.77089 * 18 17 2 21 21 C 1.39692 * 120.09911 * 24.58004 * 20 18 17 22 22 C 1.37725 * 119.96914 * 180.09216 * 21 20 18 23 23 C 1.39017 * 120.26820 * 0.02562 * 22 21 20 24 24 C 1.39256 * 120.04027 * 359.84601 * 23 22 21 25 25 C 1.38289 * 119.96564 * 0.20918 * 24 23 22 26 26 O 1.36148 * 120.75504 * 180.48627 * 24 23 22 27 27 C 1.43229 * 116.65335 * 342.38668 * 26 24 23 28 28 C 1.53461 * 108.17451 * 46.42275 * 27 26 24 29 29 O 1.35965 * 119.24641 * 179.61801 * 23 22 21 30 30 H 1.08992 * 109.47042 * 179.64378 * 1 2 3 31 31 H 1.09000 * 109.47467 * 299.64682 * 1 2 3 32 32 H 1.09005 * 109.46605 * 59.64555 * 1 2 3 33 33 H 1.09000 * 110.72191 * 259.98150 * 4 2 1 34 34 H 1.09000 * 110.71369 * 23.06782 * 4 2 1 35 35 H 0.97000 * 119.99788 * 24.99968 * 7 5 4 36 36 H 0.96997 * 119.99869 * 179.97438 * 11 10 8 37 37 H 1.08993 * 110.49910 * 278.45600 * 16 5 4 38 38 H 1.08998 * 110.34221 * 156.05623 * 16 5 4 39 39 H 1.07998 * 120.02127 * 0.06129 * 21 20 18 40 40 H 1.07996 * 119.86876 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.02374 * 179.90220 * 25 24 23 42 42 H 1.08994 * 109.79191 * 286.72630 * 27 26 24 43 43 H 1.08998 * 109.71794 * 166.07753 * 27 26 24 44 44 H 1.09002 * 109.70155 * 180.47172 * 28 27 26 45 45 H 1.09002 * 109.70380 * 59.86852 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2428 5 6 3.2876 -1.5142 0.6926 6 1 4.1654 -0.8688 0.6606 7 7 3.5537 -2.7191 1.4825 8 6 4.8170 -3.2456 1.5236 9 1 5.6172 -2.7730 0.9734 10 6 5.0692 -4.3869 2.2724 11 7 4.0940 -4.9626 2.9433 12 14 6.7925 -5.1057 2.3279 13 1 7.7010 -4.2783 1.4941 14 1 7.2795 -5.1160 3.7308 15 1 6.7668 -6.4944 1.8026 16 6 2.8099 -1.8826 -0.7367 17 7 2.0300 -0.7141 -1.1838 18 6 1.8075 -0.3621 -2.4656 19 8 1.2321 0.6785 -2.7191 20 6 2.2623 -1.2401 -3.5616 21 6 2.4422 -2.6068 -3.3357 22 6 2.8685 -3.4232 -4.3597 23 6 3.1216 -2.8928 -5.6196 24 6 2.9416 -1.5316 -5.8519 25 6 2.5150 -0.7065 -4.8275 26 8 3.1758 -0.9985 -7.0826 27 6 3.9634 -1.7848 -7.9842 28 6 3.4329 -3.2244 -7.9526 29 8 3.5491 -3.7164 -6.6134 30 1 -0.3633 -1.0276 -0.0064 31 1 -0.3634 0.5083 0.8931 32 1 -0.3633 0.5194 -0.8869 33 1 2.3528 -0.0459 2.0202 34 1 1.3038 -1.4435 1.6202 35 1 2.8349 -3.1438 1.9763 36 1 4.2702 -5.7604 3.4662 37 1 2.1802 -2.7718 -0.7113 38 1 3.6656 -2.0412 -1.3930 39 1 2.2477 -3.0231 -2.3584 40 1 3.0066 -4.4797 -4.1834 41 1 2.3766 0.3496 -5.0062 42 1 5.0073 -1.7707 -7.6708 43 1 3.8772 -1.3833 -8.9939 44 1 4.0216 -3.8478 -8.6255 45 1 2.3871 -3.2375 -8.2594 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989787007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:44 Heat of formation + Delta-G solvation = -73.334708 kcal Electronic energy + Delta-G solvation = -28707.542914 eV Core-core repulsion = 24690.646538 eV Total energy + Delta-G solvation = -4016.896376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 3.13 seconds Orbital eigenvalues (eV) -42.39951 -41.37999 -39.06230 -38.36242 -38.19663 -35.98473 -33.51872 -33.14397 -31.88962 -31.81266 -30.08160 -29.51612 -26.97420 -26.15112 -25.67332 -24.60414 -23.25844 -22.01718 -21.81824 -20.49420 -19.47288 -19.26237 -18.80450 -18.31602 -17.63741 -17.03819 -16.81544 -16.39243 -16.22361 -15.95537 -15.50445 -15.42933 -15.34781 -15.12823 -14.97775 -14.78725 -14.67778 -14.19631 -14.14859 -13.85844 -13.49334 -13.36455 -13.06091 -12.87809 -12.83246 -12.77453 -12.30184 -12.22960 -12.03948 -12.01936 -11.99336 -11.71760 -11.56980 -11.46691 -11.10175 -10.89551 -9.89498 -9.66565 -9.24996 -9.00615 -7.92281 -5.21615 -0.30985 0.15271 1.51353 1.53219 1.61634 1.63912 1.75988 2.01746 2.24827 2.59052 2.62832 3.16473 3.34127 3.39228 3.57375 3.73077 3.85471 3.92264 3.96203 4.01863 4.03226 4.11221 4.18338 4.26917 4.32572 4.47462 4.50842 4.54021 4.56588 4.67659 4.73543 4.75440 4.85690 4.94008 4.95189 5.07187 5.14129 5.16445 5.25633 5.33125 5.40033 5.47827 5.58186 5.78739 6.26946 6.28986 6.45397 7.04193 7.37508 8.07847 8.32893 9.30472 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010129 B = 0.003644 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.761643 B = 7681.860574 C = 9951.070329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 H 0.077 0.923 4 C -0.124 4.124 5 C 0.165 3.835 6 H 0.065 0.935 7 N -0.719 5.719 8 C -0.241 4.241 9 H 0.078 0.922 10 C -0.065 4.065 11 N -0.964 5.964 12 Si 0.965 3.035 13 H -0.267 1.267 14 H -0.296 1.296 15 H -0.295 1.295 16 C 0.082 3.918 17 N -0.601 5.601 18 C 0.575 3.425 19 O -0.574 6.574 20 C -0.141 4.141 21 C -0.084 4.084 22 C -0.124 4.124 23 C 0.075 3.925 24 C 0.036 3.964 25 C -0.066 4.066 26 O -0.320 6.320 27 C 0.012 3.988 28 C 0.012 3.988 29 O -0.315 6.315 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.379 0.621 36 H 0.251 0.749 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.153 0.847 40 H 0.157 0.843 41 H 0.139 0.861 42 H 0.081 0.919 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.233 5.496 -20.254 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.034 3.966 3 H 0.095 0.905 4 C -0.163 4.163 5 C 0.054 3.946 6 H 0.083 0.917 7 N -0.358 5.358 8 C -0.373 4.373 9 H 0.095 0.905 10 C -0.258 4.258 11 N -0.614 5.614 12 Si 0.795 3.205 13 H -0.192 1.192 14 H -0.224 1.224 15 H -0.222 1.222 16 C -0.043 4.043 17 N -0.333 5.333 18 C 0.366 3.634 19 O -0.455 6.455 20 C -0.144 4.144 21 C -0.102 4.102 22 C -0.142 4.142 23 C 0.029 3.971 24 C -0.009 4.009 25 C -0.085 4.085 26 O -0.235 6.235 27 C -0.062 4.062 28 C -0.062 4.062 29 O -0.229 6.229 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.212 0.788 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.170 0.830 40 H 0.174 0.826 41 H 0.156 0.844 42 H 0.099 0.901 43 H 0.176 0.824 44 H 0.176 0.824 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.317 6.030 -20.532 21.655 hybrid contribution 0.643 -0.768 0.235 1.029 sum -2.674 5.262 -20.297 21.138 Atomic orbital electron populations 1.22058 0.93924 1.02263 1.02830 1.21635 0.95111 0.96164 0.83662 0.90504 1.22955 0.97650 0.99556 0.96151 1.21509 0.96000 0.88131 0.88982 0.91701 1.42403 1.08494 1.28977 1.55962 1.19628 0.88005 1.06287 1.23347 0.90457 1.25433 1.00649 0.99285 1.00451 1.69796 1.32438 1.22838 1.36334 0.85206 0.80515 0.77932 0.76890 1.19184 1.22389 1.22197 1.23518 0.94599 0.87570 0.98655 1.48466 1.51581 1.28669 1.04566 1.17952 0.78823 0.84823 0.81795 1.90719 1.44939 1.25974 1.83900 1.19502 1.07018 0.94378 0.93484 1.21727 0.96307 0.91849 1.00334 1.20618 1.01921 1.01825 0.89842 1.19246 0.99314 0.87913 0.90602 1.18647 1.04666 0.90514 0.87122 1.20376 0.98728 1.00180 0.89251 1.86335 1.69872 1.46072 1.21267 1.24037 0.94919 0.91520 0.95748 1.24054 1.04406 0.96615 0.81110 1.86282 1.79149 1.41860 1.15635 0.92570 0.89457 0.93196 0.88922 0.90179 0.78834 0.94006 0.90912 0.90729 0.82958 0.82575 0.84365 0.90076 0.82430 0.82384 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.10 71.98 0.66 -3.28 16 2 C 0.14 3.88 3.43 45.34 0.16 4.03 16 3 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 4 C -0.12 -3.61 6.12 31.78 0.19 -3.42 16 5 C 0.16 5.84 3.73 46.46 0.17 6.02 16 6 H 0.06 2.38 8.09 -2.39 -0.02 2.36 16 7 N -0.72 -32.58 5.24 -316.01 -1.66 -34.24 16 8 C -0.24 -12.30 9.96 84.03 0.84 -11.47 16 9 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 10 C -0.07 -3.51 5.50 84.86 0.47 -3.04 16 11 N -0.96 -55.54 13.06 21.65 0.28 -55.25 16 12 Si 0.96 43.87 29.55 68.60 2.03 45.90 16 13 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 14 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 15 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 16 C 0.08 2.64 4.69 86.93 0.41 3.05 16 17 N -0.60 -18.69 3.06 -791.23 -2.42 -21.11 16 18 C 0.58 19.26 7.38 86.72 0.64 19.90 16 19 O -0.57 -21.88 15.86 -3.98 -0.06 -21.94 16 20 C -0.14 -4.25 5.67 -20.10 -0.11 -4.37 16 21 C -0.08 -2.30 8.05 22.50 0.18 -2.12 16 22 C -0.12 -3.12 9.94 22.34 0.22 -2.90 16 23 C 0.08 1.88 6.51 22.70 0.15 2.03 16 24 C 0.04 0.93 6.48 22.53 0.15 1.07 16 25 C -0.07 -1.90 9.50 22.63 0.21 -1.69 16 26 O -0.32 -7.12 10.42 -83.03 -0.87 -7.99 16 27 C 0.01 0.15 7.26 72.14 0.52 0.68 16 28 C 0.01 0.15 7.25 72.14 0.52 0.67 16 29 O -0.31 -6.62 10.40 -80.95 -0.84 -7.46 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 1.44 7.08 -2.38 -0.02 1.43 16 33 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.08 2.34 7.72 -2.39 -0.02 2.32 16 35 H 0.38 18.43 7.77 -92.71 -0.72 17.71 16 36 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 37 H 0.07 2.38 6.83 -2.39 -0.02 2.36 16 38 H 0.07 2.43 6.81 -2.39 -0.02 2.41 16 39 H 0.15 4.16 4.58 -2.91 -0.01 4.15 16 40 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 41 H 0.14 4.04 7.84 -2.91 -0.02 4.02 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.16 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.16 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -67.10 365.55 2.14 -64.96 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 0.30 Total: 31.98 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 5.38 Total: 5.16 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -3.80 Total: -110.60 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -1.77 Total: -37.39 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -67.10 2.14 -64.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989787007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.375 kcal (2) G-P(sol) polarization free energy of solvation -67.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.13 seconds