Wall clock time and date at job start Tue Mar 31 2020 17:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.99628 * 2 1 4 4 C 1.54318 * 109.88377 * 238.90621 * 2 1 3 5 5 C 1.55158 * 102.94120 * 218.38794 * 4 2 1 6 6 H 1.08998 * 111.00325 * 277.42894 * 5 4 2 7 7 N 1.46498 * 111.00276 * 153.57119 * 5 4 2 8 8 C 1.36946 * 119.99689 * 155.00005 * 7 5 4 9 9 H 1.08005 * 119.99829 * 0.02562 * 8 7 5 10 10 C 1.38807 * 119.99906 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00383 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99878 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47027 * 60.00347 * 12 10 8 14 14 H 1.48499 * 109.46679 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47307 * 300.00025 * 12 10 8 16 16 C 1.54914 * 101.57916 * 35.50248 * 5 4 2 17 17 N 1.47020 * 109.88021 * 121.08952 * 2 1 3 18 18 C 1.34773 * 125.65580 * 298.38254 * 17 2 1 19 19 O 1.21586 * 119.99891 * 354.20706 * 18 17 2 20 20 C 1.47607 * 120.00413 * 174.20807 * 18 17 2 21 21 C 1.39695 * 120.10130 * 155.47230 * 20 18 17 22 22 C 1.37718 * 119.97078 * 180.02562 * 21 20 18 23 23 C 1.39010 * 120.26706 * 0.04224 * 22 21 20 24 24 C 1.39262 * 120.04481 * 359.83182 * 23 22 21 25 25 C 1.38280 * 119.96072 * 359.93761 * 24 23 22 26 26 O 1.36149 * 120.76129 * 180.37537 * 24 23 22 27 27 C 1.43174 * 116.68629 * 342.58044 * 26 24 23 28 28 C 1.53471 * 108.22611 * 46.26954 * 27 26 24 29 29 O 1.35963 * 119.24571 * 179.60622 * 23 22 21 30 30 H 1.08999 * 109.46951 * 181.09453 * 1 2 3 31 31 H 1.08999 * 109.46890 * 301.09705 * 1 2 3 32 32 H 1.09001 * 109.46868 * 61.09522 * 1 2 3 33 33 H 1.08993 * 110.72215 * 100.02588 * 4 2 1 34 34 H 1.09000 * 110.86930 * 336.81704 * 4 2 1 35 35 H 0.96997 * 120.00305 * 335.00393 * 7 5 4 36 36 H 0.96994 * 120.00445 * 179.97438 * 11 10 8 37 37 H 1.08991 * 110.36890 * 81.83383 * 16 5 4 38 38 H 1.09006 * 110.36164 * 204.15085 * 16 5 4 39 39 H 1.08002 * 120.01228 * 0.06637 * 21 20 18 40 40 H 1.08006 * 119.86641 * 180.02562 * 22 21 20 41 41 H 1.08005 * 120.02218 * 180.16113 * 25 24 23 42 42 H 1.08998 * 109.71527 * 165.95053 * 27 26 24 43 43 H 1.08993 * 109.71501 * 286.58889 * 27 26 24 44 44 H 1.09005 * 109.70532 * 59.91419 * 28 27 26 45 45 H 1.08996 * 109.70814 * 180.48739 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2427 5 6 3.2877 -1.5141 -0.6923 6 1 4.1655 -0.8687 -0.6603 7 7 3.5532 -2.7195 -1.4815 8 6 4.8166 -3.2464 -1.5227 9 1 5.6171 -2.7735 -0.9730 10 6 5.0683 -4.3881 -2.2709 11 7 4.0930 -4.9641 -2.9412 12 14 6.7918 -5.1065 -2.3276 13 1 7.2195 -5.4759 -0.9544 14 1 6.7960 -6.3154 -3.1899 15 1 7.7300 -4.0989 -2.8840 16 6 2.8145 -1.8793 0.7368 17 7 2.0300 -0.7139 1.1840 18 6 1.8076 -0.3618 2.4658 19 8 1.2328 0.6792 2.7192 20 6 2.2619 -1.2398 3.5619 21 6 2.5128 -0.7066 4.8285 22 6 2.9370 -1.5281 5.8491 23 6 3.1181 -2.8880 5.6247 24 6 2.8672 -3.4262 4.3650 25 6 2.4364 -2.6073 3.3374 26 8 3.0324 -4.7573 4.1310 27 6 3.8189 -5.4844 5.0810 28 6 3.3563 -5.0891 6.4899 29 8 3.5453 -3.6785 6.6450 30 1 -0.3633 -1.0275 0.0196 31 1 -0.3633 0.5308 0.8800 32 1 -0.3633 0.4967 -0.8997 33 1 2.3530 -0.0460 -2.0200 34 1 1.3065 -1.4458 -1.6210 35 1 2.8343 -3.1443 -1.9749 36 1 4.2689 -5.7617 -3.4643 37 1 2.1888 -2.7714 0.7129 38 1 3.6717 -2.0337 1.3923 39 1 2.3735 0.3494 5.0073 40 1 3.1301 -1.1142 6.8278 41 1 2.2391 -3.0242 2.3608 42 1 3.6760 -6.5549 4.9341 43 1 4.8720 -5.2329 4.9558 44 1 2.3013 -5.3341 6.6127 45 1 3.9467 -5.6236 7.2341 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989787008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:06 Heat of formation + Delta-G solvation = -53.828381 kcal Electronic energy + Delta-G solvation = -29059.672507 eV Core-core repulsion = 25043.621989 eV Total energy + Delta-G solvation = -4016.050518 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -41.43367 -40.10138 -37.87807 -37.41417 -36.92985 -34.22548 -32.33987 -31.42321 -31.30368 -30.27351 -28.70665 -28.39120 -25.63937 -25.23707 -23.99663 -23.13982 -22.46597 -20.81649 -20.34062 -19.37568 -18.44947 -17.70099 -17.37410 -17.14865 -16.58397 -15.99436 -15.54197 -15.20511 -15.08357 -14.60756 -14.53618 -14.18410 -14.04781 -13.81104 -13.70690 -13.46047 -13.30629 -13.14726 -12.66985 -12.51335 -12.29273 -12.13987 -11.95804 -11.63995 -11.30499 -11.24941 -11.15552 -11.02415 -10.82528 -10.65463 -10.52862 -10.31215 -10.05871 -9.82094 -9.71694 -9.03866 -8.76547 -8.41955 -8.16056 -7.11463 -5.87253 -3.18186 0.79675 1.21425 2.68943 2.94825 3.05528 3.22138 3.38141 3.43347 3.43738 3.74870 3.98647 4.42791 4.47932 4.57041 4.62688 4.69244 4.95153 5.03421 5.09096 5.11983 5.22677 5.24937 5.26018 5.29252 5.49183 5.56585 5.61662 5.68143 5.77536 5.81322 5.92748 5.99895 6.05254 6.13105 6.18206 6.26340 6.33627 6.39788 6.44171 6.48255 6.68078 6.69829 6.81281 7.23938 7.61118 7.77583 8.29655 8.34993 9.42254 9.95227 10.30388 11.34574 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008454 B = 0.004614 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.072796 B = 6067.575385 C = 8806.971835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.074 0.926 4 C -0.138 4.138 5 C 0.172 3.828 6 H 0.069 0.931 7 N -0.710 5.710 8 C -0.249 4.249 9 H 0.072 0.928 10 C -0.006 4.006 11 N -0.929 5.929 12 Si 0.907 3.093 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.285 1.285 16 C 0.068 3.932 17 N -0.603 5.603 18 C 0.577 3.423 19 O -0.547 6.547 20 C -0.125 4.125 21 C -0.059 4.059 22 C -0.126 4.126 23 C 0.070 3.930 24 C 0.044 3.956 25 C -0.084 4.084 26 O -0.300 6.300 27 C 0.020 3.980 28 C 0.020 3.980 29 O -0.306 6.306 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.157 0.843 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.943 2.950 16.534 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.036 3.964 3 H 0.092 0.908 4 C -0.177 4.177 5 C 0.059 3.941 6 H 0.087 0.913 7 N -0.350 5.350 8 C -0.380 4.380 9 H 0.090 0.910 10 C -0.203 4.203 11 N -0.576 5.576 12 Si 0.738 3.262 13 H -0.212 1.212 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.058 4.058 17 N -0.336 5.336 18 C 0.366 3.634 19 O -0.427 6.427 20 C -0.128 4.128 21 C -0.078 4.078 22 C -0.144 4.144 23 C 0.024 3.976 24 C -0.001 4.001 25 C -0.103 4.103 26 O -0.214 6.214 27 C -0.056 4.056 28 C -0.056 4.056 29 O -0.221 6.221 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.222 0.778 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.160 0.840 40 H 0.157 0.843 41 H 0.174 0.826 42 H 0.142 0.858 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.045 3.373 16.711 17.521 hybrid contribution 0.827 -1.080 -0.057 1.361 sum -3.218 2.293 16.654 17.116 Atomic orbital electron populations 1.22126 0.95090 1.02247 1.02384 1.21531 0.94196 0.96255 0.84463 0.90777 1.23052 0.99186 0.99695 0.95741 1.21324 0.94802 0.89530 0.88435 0.91308 1.42307 1.09623 1.27734 1.55301 1.19207 0.86821 1.06957 1.25047 0.91025 1.24747 0.97570 0.98245 0.99719 1.69643 1.30882 1.22339 1.34769 0.86278 0.84048 0.78472 0.77434 1.21181 1.21617 1.21124 1.23783 0.94487 0.87494 1.00009 1.48505 1.51641 1.29011 1.04415 1.17719 0.79277 0.85029 0.81371 1.90738 1.43691 1.24705 1.83547 1.19617 1.05560 0.92814 0.94854 1.20940 0.96018 1.00406 0.90425 1.20321 1.03579 0.89953 1.00582 1.19166 1.00449 0.91873 0.86091 1.18747 1.04388 0.84519 0.92469 1.21254 0.98376 0.91564 0.99064 1.86411 1.68860 1.17005 1.49173 1.23655 0.95861 0.98197 0.87899 1.23673 1.03124 0.80042 0.98727 1.86256 1.78085 1.17800 1.39920 0.92469 0.91775 0.91730 0.90234 0.90327 0.77807 0.93272 0.90973 0.90758 0.83991 0.84282 0.82596 0.85840 0.90224 0.90365 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.10 37.16 0.34 -1.85 16 2 C 0.14 2.06 3.43 -66.95 -0.23 1.83 16 3 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.14 -2.13 6.12 -24.90 -0.15 -2.28 16 5 C 0.17 3.18 3.71 -65.78 -0.24 2.94 16 6 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 7 N -0.71 -16.52 5.24 -51.35 -0.27 -16.79 16 8 C -0.25 -6.53 9.96 -15.06 -0.15 -6.68 16 9 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 10 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 11 N -0.93 -26.78 13.06 55.49 0.72 -26.06 16 12 Si 0.91 21.53 29.55 -169.99 -5.02 16.50 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 C 0.07 1.16 4.68 -2.52 -0.01 1.15 16 17 N -0.60 -9.70 3.06 -164.20 -0.50 -10.20 16 18 C 0.58 9.63 7.38 -12.44 -0.09 9.54 16 19 O -0.55 -10.18 15.87 5.29 0.08 -10.10 16 20 C -0.13 -1.89 5.66 -104.99 -0.59 -2.49 16 21 C -0.06 -0.77 9.58 -39.23 -0.38 -1.15 16 22 C -0.13 -1.52 9.94 -39.49 -0.39 -1.91 16 23 C 0.07 0.92 6.51 -38.91 -0.25 0.66 16 24 C 0.04 0.63 6.48 -39.19 -0.25 0.38 16 25 C -0.08 -1.27 7.98 -39.03 -0.31 -1.58 16 26 O -0.30 -4.22 10.42 -32.97 -0.34 -4.56 16 27 C 0.02 0.19 7.26 37.40 0.27 0.46 16 28 C 0.02 0.16 7.26 37.40 0.27 0.43 16 29 O -0.31 -3.56 10.41 -32.38 -0.34 -3.89 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.95 7.10 -51.93 -0.37 0.58 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.23 7.72 -51.93 -0.40 0.83 16 35 H 0.39 9.58 7.76 -40.82 -0.32 9.26 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.07 1.28 6.82 -51.93 -0.35 0.93 16 38 H 0.07 1.30 6.85 -51.93 -0.36 0.94 16 39 H 0.14 1.71 7.84 -52.49 -0.41 1.30 16 40 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 41 H 0.16 2.47 4.61 -52.48 -0.24 2.23 16 42 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 365.61 15.07 5.51 5.51 Total: -1.00 -31.48 365.61 -8.65 -40.14 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.22 Total: 10.25 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.28 Total: -0.80 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.05 Total: -53.05 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.60 Total: -18.55 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.48 -8.65 -40.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989787008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.692 kcal (2) G-P(sol) polarization free energy of solvation -31.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds