Wall clock time and date at job start Tue Mar 31 2020 17:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.99628 * 2 1 4 4 C 1.54318 * 109.88377 * 238.90621 * 2 1 3 5 5 C 1.55158 * 102.94120 * 218.38794 * 4 2 1 6 6 H 1.08998 * 111.00325 * 277.42894 * 5 4 2 7 7 N 1.46498 * 111.00276 * 153.57119 * 5 4 2 8 8 C 1.36946 * 119.99689 * 155.00005 * 7 5 4 9 9 H 1.08005 * 119.99829 * 0.02562 * 8 7 5 10 10 C 1.38807 * 119.99906 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00383 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99878 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47027 * 60.00347 * 12 10 8 14 14 H 1.48499 * 109.46679 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47307 * 300.00025 * 12 10 8 16 16 C 1.54914 * 101.57916 * 35.50248 * 5 4 2 17 17 N 1.47020 * 109.88021 * 121.08952 * 2 1 3 18 18 C 1.34773 * 125.65580 * 298.38254 * 17 2 1 19 19 O 1.21586 * 119.99891 * 354.20706 * 18 17 2 20 20 C 1.47607 * 120.00413 * 174.20807 * 18 17 2 21 21 C 1.39695 * 120.10130 * 155.47230 * 20 18 17 22 22 C 1.37718 * 119.97078 * 180.02562 * 21 20 18 23 23 C 1.39010 * 120.26706 * 0.04224 * 22 21 20 24 24 C 1.39262 * 120.04481 * 359.83182 * 23 22 21 25 25 C 1.38280 * 119.96072 * 359.93761 * 24 23 22 26 26 O 1.36149 * 120.76129 * 180.37537 * 24 23 22 27 27 C 1.43174 * 116.68629 * 342.58044 * 26 24 23 28 28 C 1.53471 * 108.22611 * 46.26954 * 27 26 24 29 29 O 1.35963 * 119.24571 * 179.60622 * 23 22 21 30 30 H 1.08999 * 109.46951 * 181.09453 * 1 2 3 31 31 H 1.08999 * 109.46890 * 301.09705 * 1 2 3 32 32 H 1.09001 * 109.46868 * 61.09522 * 1 2 3 33 33 H 1.08993 * 110.72215 * 100.02588 * 4 2 1 34 34 H 1.09000 * 110.86930 * 336.81704 * 4 2 1 35 35 H 0.96997 * 120.00305 * 335.00393 * 7 5 4 36 36 H 0.96994 * 120.00445 * 179.97438 * 11 10 8 37 37 H 1.08991 * 110.36890 * 81.83383 * 16 5 4 38 38 H 1.09006 * 110.36164 * 204.15085 * 16 5 4 39 39 H 1.08002 * 120.01228 * 0.06637 * 21 20 18 40 40 H 1.08006 * 119.86641 * 180.02562 * 22 21 20 41 41 H 1.08005 * 120.02218 * 180.16113 * 25 24 23 42 42 H 1.08998 * 109.71527 * 165.95053 * 27 26 24 43 43 H 1.08993 * 109.71501 * 286.58889 * 27 26 24 44 44 H 1.09005 * 109.70532 * 59.91419 * 28 27 26 45 45 H 1.08996 * 109.70814 * 180.48739 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2427 5 6 3.2877 -1.5141 -0.6923 6 1 4.1655 -0.8687 -0.6603 7 7 3.5532 -2.7195 -1.4815 8 6 4.8166 -3.2464 -1.5227 9 1 5.6171 -2.7735 -0.9730 10 6 5.0683 -4.3881 -2.2709 11 7 4.0930 -4.9641 -2.9412 12 14 6.7918 -5.1065 -2.3276 13 1 7.2195 -5.4759 -0.9544 14 1 6.7960 -6.3154 -3.1899 15 1 7.7300 -4.0989 -2.8840 16 6 2.8145 -1.8793 0.7368 17 7 2.0300 -0.7139 1.1840 18 6 1.8076 -0.3618 2.4658 19 8 1.2328 0.6792 2.7192 20 6 2.2619 -1.2398 3.5619 21 6 2.5128 -0.7066 4.8285 22 6 2.9370 -1.5281 5.8491 23 6 3.1181 -2.8880 5.6247 24 6 2.8672 -3.4262 4.3650 25 6 2.4364 -2.6073 3.3374 26 8 3.0324 -4.7573 4.1310 27 6 3.8189 -5.4844 5.0810 28 6 3.3563 -5.0891 6.4899 29 8 3.5453 -3.6785 6.6450 30 1 -0.3633 -1.0275 0.0196 31 1 -0.3633 0.5308 0.8800 32 1 -0.3633 0.4967 -0.8997 33 1 2.3530 -0.0460 -2.0200 34 1 1.3065 -1.4458 -1.6210 35 1 2.8343 -3.1443 -1.9749 36 1 4.2689 -5.7617 -3.4643 37 1 2.1888 -2.7714 0.7129 38 1 3.6717 -2.0337 1.3923 39 1 2.3735 0.3494 5.0073 40 1 3.1301 -1.1142 6.8278 41 1 2.2391 -3.0242 2.3608 42 1 3.6760 -6.5549 4.9341 43 1 4.8720 -5.2329 4.9558 44 1 2.3013 -5.3341 6.6127 45 1 3.9467 -5.6236 7.2341 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989787008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:02 Heat of formation + Delta-G solvation = -73.603047 kcal Electronic energy + Delta-G solvation = -29060.530001 eV Core-core repulsion = 25043.621989 eV Total energy + Delta-G solvation = -4016.908012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -42.40317 -41.36642 -39.11265 -38.34949 -38.15286 -36.00608 -33.57863 -33.17862 -32.19644 -31.37443 -30.11489 -29.59704 -26.92752 -26.26182 -25.74385 -24.31912 -23.58294 -22.04768 -21.66403 -20.52231 -19.50397 -19.25398 -18.70996 -18.17396 -17.80201 -17.31140 -16.70047 -16.50662 -16.07572 -15.99585 -15.59318 -15.42958 -15.33730 -15.26360 -14.83291 -14.72542 -14.62557 -14.23580 -14.21266 -13.75955 -13.47586 -13.36533 -13.09444 -12.89838 -12.84395 -12.77497 -12.35929 -12.26721 -12.12119 -12.05252 -12.01996 -11.75014 -11.56945 -11.45894 -11.12494 -10.88643 -9.81470 -9.75336 -9.22039 -9.04423 -7.94381 -5.24301 -0.30141 0.17218 1.49585 1.51024 1.57125 1.59378 1.86876 2.01445 2.20954 2.56766 2.63079 3.16227 3.32631 3.36431 3.56372 3.76251 3.81758 3.91422 3.96190 4.01339 4.03202 4.14727 4.16709 4.24869 4.28850 4.44662 4.49974 4.51552 4.56293 4.65492 4.70461 4.74680 4.83587 4.88233 4.98044 5.04927 5.12067 5.15869 5.25923 5.36716 5.39506 5.45425 5.53836 5.79537 6.26313 6.28328 6.43765 7.03269 7.34495 8.04779 8.29949 9.28076 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008454 B = 0.004614 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.072796 B = 6067.575385 C = 8806.971835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.137 3.863 3 H 0.081 0.919 4 C -0.124 4.124 5 C 0.164 3.836 6 H 0.066 0.934 7 N -0.720 5.720 8 C -0.246 4.246 9 H 0.076 0.924 10 C -0.065 4.065 11 N -0.964 5.964 12 Si 0.966 3.034 13 H -0.279 1.279 14 H -0.296 1.296 15 H -0.278 1.278 16 C 0.087 3.913 17 N -0.603 5.603 18 C 0.576 3.424 19 O -0.568 6.568 20 C -0.143 4.143 21 C -0.056 4.056 22 C -0.118 4.118 23 C 0.073 3.927 24 C 0.031 3.969 25 C -0.096 4.096 26 O -0.326 6.326 27 C 0.009 3.991 28 C 0.018 3.982 29 O -0.311 6.311 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.378 0.622 36 H 0.252 0.748 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.154 0.846 40 H 0.169 0.831 41 H 0.141 0.859 42 H 0.151 0.849 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.350 3.253 18.384 18.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.034 3.966 3 H 0.099 0.901 4 C -0.163 4.163 5 C 0.054 3.946 6 H 0.084 0.916 7 N -0.359 5.359 8 C -0.377 4.377 9 H 0.094 0.906 10 C -0.258 4.258 11 N -0.614 5.614 12 Si 0.796 3.204 13 H -0.206 1.206 14 H -0.222 1.222 15 H -0.204 1.204 16 C -0.039 4.039 17 N -0.335 5.335 18 C 0.367 3.633 19 O -0.450 6.450 20 C -0.146 4.146 21 C -0.075 4.075 22 C -0.137 4.137 23 C 0.026 3.974 24 C -0.014 4.014 25 C -0.115 4.115 26 O -0.242 6.242 27 C -0.066 4.066 28 C -0.056 4.056 29 O -0.225 6.225 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.211 0.789 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.171 0.829 40 H 0.187 0.813 41 H 0.158 0.842 42 H 0.168 0.832 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.447 3.707 18.596 19.272 hybrid contribution 0.641 -1.189 -0.516 1.446 sum -2.806 2.518 18.080 18.469 Atomic orbital electron populations 1.22058 0.93895 1.02076 1.03012 1.21646 0.95134 0.96239 0.83551 0.90109 1.22951 0.97481 0.99529 0.96321 1.21477 0.96178 0.88189 0.88803 0.91573 1.42391 1.08504 1.28996 1.55992 1.19555 0.87961 1.06522 1.23681 0.90606 1.25462 1.00838 0.99139 1.00329 1.69786 1.32619 1.22811 1.36190 0.85326 0.80284 0.77473 0.77360 1.20556 1.22247 1.20444 1.23375 0.94195 0.87540 0.98754 1.48509 1.51468 1.28622 1.04872 1.17970 0.78782 0.84907 0.81659 1.90717 1.44743 1.25680 1.83811 1.19584 1.07147 0.92588 0.95282 1.21110 0.95472 1.01135 0.89815 1.20628 1.02170 0.89426 1.01426 1.19315 0.99543 0.92569 0.85933 1.18840 1.04711 0.84879 0.92944 1.21121 0.99588 0.91929 0.98900 1.86366 1.69675 1.16970 1.51148 1.24021 0.95310 0.99222 0.88005 1.24003 1.04386 0.78430 0.98821 1.86250 1.77705 1.19393 1.39185 0.92947 0.92942 0.89320 0.88667 0.90395 0.78894 0.93942 0.91927 0.91385 0.82870 0.81332 0.84158 0.83159 0.90379 0.89688 0.82152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.10 71.98 0.66 -3.34 16 2 C 0.14 3.96 3.43 45.34 0.16 4.11 16 3 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 4 C -0.12 -3.73 6.12 31.78 0.19 -3.54 16 5 C 0.16 6.10 3.71 46.39 0.17 6.27 16 6 H 0.07 2.50 8.09 -2.39 -0.02 2.48 16 7 N -0.72 -33.89 5.24 -316.36 -1.66 -35.55 16 8 C -0.25 -12.91 9.96 84.03 0.84 -12.08 16 9 H 0.08 3.85 7.83 -2.91 -0.02 3.82 16 10 C -0.06 -3.55 5.50 84.86 0.47 -3.09 16 11 N -0.96 -56.57 13.06 21.65 0.28 -56.28 16 12 Si 0.97 44.45 29.55 68.60 2.03 46.47 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 14 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 15 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 16 C 0.09 3.03 4.68 86.86 0.41 3.44 16 17 N -0.60 -19.41 3.06 -791.67 -2.43 -21.84 16 18 C 0.58 19.28 7.38 86.72 0.64 19.92 16 19 O -0.57 -20.98 15.87 -3.99 -0.06 -21.05 16 20 C -0.14 -4.32 5.66 -20.10 -0.11 -4.44 16 21 C -0.06 -1.42 9.58 22.50 0.22 -1.21 16 22 C -0.12 -2.62 9.94 22.33 0.22 -2.39 16 23 C 0.07 1.80 6.51 22.70 0.15 1.95 16 24 C 0.03 0.90 6.48 22.53 0.15 1.05 16 25 C -0.10 -2.99 7.98 22.63 0.18 -2.81 16 26 O -0.33 -9.13 10.42 -83.04 -0.86 -10.00 16 27 C 0.01 0.16 7.26 72.14 0.52 0.68 16 28 C 0.02 0.25 7.26 72.14 0.52 0.77 16 29 O -0.31 -6.47 10.41 -80.93 -0.84 -7.31 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.51 7.10 -2.39 -0.02 1.50 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.08 2.38 7.72 -2.39 -0.02 2.37 16 35 H 0.38 19.09 7.76 -92.71 -0.72 18.37 16 36 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.06 2.32 6.82 -2.39 -0.02 2.30 16 38 H 0.07 2.44 6.85 -2.38 -0.02 2.43 16 39 H 0.15 3.47 7.84 -2.91 -0.02 3.45 16 40 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 41 H 0.14 4.69 4.61 -2.91 -0.01 4.68 16 42 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 45 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -68.03 365.61 2.13 -65.90 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.31 Total: 34.36 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 5.37 Total: 5.30 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -3.80 Total: -113.67 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -1.77 Total: -38.36 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -68.03 2.13 -65.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989787008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.703 kcal (2) G-P(sol) polarization free energy of solvation -68.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds