Wall clock time and date at job start Tue Mar 31 2020 17:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.70795 * 2 1 4 4 O 1.43178 * 109.71351 * 239.40529 * 2 1 3 5 5 C 1.36105 * 116.69738 * 193.99278 * 4 2 1 6 6 C 1.38697 * 119.39509 * 197.32084 * 5 4 2 7 7 C 1.38194 * 120.06331 * 180.16466 * 6 5 4 8 8 C 1.38248 * 120.11609 * 359.74560 * 7 6 5 9 9 C 1.38197 * 120.11082 * 0.48125 * 8 7 6 10 10 C 1.38698 * 120.06643 * 359.44293 * 9 8 7 11 11 O 1.36105 * 119.40133 * 180.63707 * 10 9 8 12 12 C 1.43175 * 116.72094 * 197.02536 * 11 10 9 13 13 H 1.08995 * 109.71178 * 194.13882 * 12 11 10 14 14 C 1.50704 * 109.73641 * 73.53604 * 12 11 10 15 15 O 1.21282 * 119.99730 * 348.33219 * 14 12 11 16 16 N 1.34777 * 119.99854 * 168.32928 * 14 12 11 17 17 C 1.46495 * 120.00086 * 184.84331 * 16 14 12 18 18 H 1.09006 * 112.85227 * 336.20601 * 17 16 14 19 19 C 1.53783 * 113.61388 * 107.50401 * 17 16 14 20 20 C 1.53784 * 87.08117 * 89.11743 * 19 17 16 21 21 H 1.09001 * 113.69176 * 270.87492 * 20 19 17 22 22 N 1.46497 * 113.61286 * 139.98001 * 20 19 17 23 23 C 1.36944 * 119.99683 * 107.50946 * 22 20 19 24 24 H 1.08004 * 119.99724 * 359.97438 * 23 22 20 25 25 C 1.38803 * 119.99854 * 180.02562 * 23 22 20 26 26 N 1.31625 * 120.00340 * 359.97438 * 25 23 22 27 27 Si 1.86807 * 120.00186 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47230 * 89.99642 * 27 25 23 29 29 H 1.48494 * 109.47415 * 209.99807 * 27 25 23 30 30 H 1.48501 * 109.46579 * 330.00124 * 27 25 23 31 31 C 1.53777 * 113.61837 * 205.00349 * 17 16 14 32 32 H 1.09006 * 109.47273 * 173.49262 * 1 2 3 33 33 H 1.08998 * 109.47373 * 293.49099 * 1 2 3 34 34 H 1.08996 * 109.46741 * 53.49318 * 1 2 3 35 35 H 1.08006 * 119.97013 * 0.18033 * 6 5 4 36 36 H 1.08005 * 119.93958 * 180.02562 * 7 6 5 37 37 H 1.07995 * 119.94760 * 180.23167 * 8 7 6 38 38 H 1.08000 * 119.96553 * 179.72113 * 9 8 7 39 39 H 0.96994 * 120.00012 * 4.85359 * 16 14 12 40 40 H 1.08996 * 113.62049 * 203.66707 * 19 17 16 41 41 H 1.09004 * 113.60984 * 334.57513 * 19 17 16 42 42 H 0.96998 * 120.00401 * 287.50469 * 22 20 19 43 43 H 0.96998 * 119.99846 * 180.02562 * 26 25 23 44 44 H 1.08998 * 113.61694 * 25.43394 * 31 17 16 45 45 H 1.08998 * 113.61785 * 156.25571 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 8 2.0130 -0.6860 -1.1602 5 6 3.3300 -1.0295 -1.1635 6 6 3.9448 -1.3582 -2.3625 7 6 5.2805 -1.7123 -2.3814 8 6 6.0087 -1.7350 -1.2065 9 6 5.4010 -1.4131 -0.0078 10 6 4.0612 -1.0553 0.0180 11 8 3.4797 -0.7283 1.2043 12 6 2.0485 -0.7355 1.2433 13 1 1.7027 -0.2260 2.1427 14 6 1.5464 -2.1564 1.2394 15 8 2.3081 -3.0680 0.9948 16 7 0.2510 -2.4141 1.5078 17 6 -0.2146 -3.7995 1.6088 18 1 0.4203 -4.5000 1.0662 19 6 -0.5312 -4.2396 3.0478 20 6 -1.9591 -3.7210 2.8086 21 1 -2.0910 -2.6690 3.0613 22 7 -2.9987 -4.5787 3.3827 23 6 -3.6848 -4.1715 4.4958 24 1 -3.4591 -3.2182 4.9505 25 6 -4.6695 -4.9844 5.0400 26 7 -4.9442 -6.1464 4.4861 27 14 -5.6049 -4.4293 6.5588 28 1 -6.8108 -3.6672 6.1463 29 1 -6.0165 -5.6176 7.3485 30 1 -4.7310 -3.5618 7.3887 31 6 -1.7137 -3.9688 1.3108 32 1 -0.3634 -1.0211 -0.1165 33 1 -0.3634 0.4096 0.9425 34 1 -0.3633 0.6114 -0.8260 35 1 3.3792 -1.3371 -3.2824 36 1 5.7573 -1.9675 -3.3163 37 1 7.0533 -2.0085 -1.2249 38 1 5.9710 -1.4360 0.9093 39 1 -0.3730 -1.6824 1.6340 40 1 -0.4775 -5.3180 3.1965 41 1 0.0156 -3.6790 3.8061 42 1 -3.2012 -5.4350 2.9745 43 1 -5.6326 -6.7142 4.8663 44 1 -2.1216 -3.1898 0.6668 45 1 -1.9831 -4.9729 0.9832 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021036273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:00 Heat of formation + Delta-G solvation = -36.692321 kcal Electronic energy + Delta-G solvation = -28766.778363 eV Core-core repulsion = 24751.470920 eV Total energy + Delta-G solvation = -4015.307443 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.97188 -39.83046 -38.27662 -37.78057 -37.21137 -34.42993 -33.50632 -32.16097 -30.88912 -29.91270 -29.30482 -27.75621 -25.19844 -24.70864 -23.93526 -22.94280 -22.77895 -21.77480 -20.24948 -19.20549 -18.95131 -18.26499 -17.24920 -17.08948 -16.79849 -15.89902 -15.65813 -15.30031 -15.09800 -14.94608 -14.64838 -14.45521 -14.04503 -13.98025 -13.79137 -13.60942 -13.36719 -13.08858 -12.88238 -12.71390 -12.16380 -12.15354 -12.06746 -11.92069 -11.80375 -11.68907 -11.34034 -10.94386 -10.83709 -10.64439 -10.39368 -10.26603 -9.99550 -9.90494 -9.61811 -8.97244 -8.86927 -8.80238 -8.21437 -7.03258 -5.84191 -3.13662 1.13169 1.14751 2.31126 2.58309 2.91973 3.03117 3.38433 3.43776 3.45732 3.57543 3.76701 4.28699 4.34674 4.37706 4.53471 4.65699 4.67726 4.81314 4.97358 4.99016 5.11383 5.14705 5.20327 5.22243 5.29650 5.38868 5.43944 5.60288 5.68669 5.80846 5.84474 5.94619 5.99974 6.06275 6.19313 6.26159 6.28203 6.38915 6.43689 6.55394 6.61980 6.64279 7.00226 7.16797 7.40183 7.62447 8.06878 8.33961 9.45295 10.02192 10.36447 11.38004 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026768 B = 0.002386 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.762437 B =11731.203782 C =11881.851275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.063 3.937 3 H 0.097 0.903 4 O -0.300 6.300 5 C 0.058 3.942 6 C -0.115 4.115 7 C -0.118 4.118 8 C -0.118 4.118 9 C -0.109 4.109 10 C 0.065 3.935 11 O -0.280 6.280 12 C 0.033 3.967 13 H 0.152 0.848 14 C 0.498 3.502 15 O -0.516 6.516 16 N -0.701 5.701 17 C 0.114 3.886 18 H 0.096 0.904 19 C -0.176 4.176 20 C 0.168 3.832 21 H 0.073 0.927 22 N -0.712 5.712 23 C -0.246 4.246 24 H 0.071 0.929 25 C -0.012 4.012 26 N -0.931 5.931 27 Si 0.908 3.092 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.282 1.282 31 C -0.158 4.158 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.401 0.599 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.064 0.936 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.965 14.900 -13.179 26.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.006 3.994 3 H 0.114 0.886 4 O -0.215 6.215 5 C 0.013 3.987 6 C -0.134 4.134 7 C -0.136 4.136 8 C -0.136 4.136 9 C -0.128 4.128 10 C 0.021 3.979 11 O -0.193 6.193 12 C -0.028 4.028 13 H 0.170 0.830 14 C 0.282 3.718 15 O -0.390 6.390 16 N -0.355 5.355 17 C 0.008 3.992 18 H 0.114 0.886 19 C -0.218 4.218 20 C 0.055 3.945 21 H 0.091 0.909 22 N -0.349 5.349 23 C -0.378 4.378 24 H 0.089 0.911 25 C -0.208 4.208 26 N -0.579 5.579 27 Si 0.738 3.262 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 C -0.198 4.198 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.237 0.763 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 18.358 14.314 -13.127 26.725 hybrid contribution -1.041 0.258 1.015 1.476 sum 17.317 14.572 -12.112 25.669 Atomic orbital electron populations 1.22111 0.90480 1.05242 1.04390 1.23070 0.97317 0.95607 0.83434 0.88562 1.86330 1.21854 1.73135 1.40220 1.18867 0.83848 1.02384 0.93590 1.20409 0.94778 1.02664 0.95555 1.20879 0.93179 1.00939 0.98645 1.20884 1.00156 1.00936 0.91624 1.20414 0.92088 1.00932 0.99360 1.18822 0.93720 1.01720 0.83675 1.86399 1.18251 1.83941 1.30726 1.23326 0.81527 0.95495 1.02414 0.83044 1.20643 0.82986 0.90762 0.77376 1.90750 1.55362 1.45986 1.46928 1.45894 1.08883 1.09156 1.71528 1.21877 0.95945 0.82105 0.99237 0.88551 1.24327 1.01051 1.02041 0.94414 1.21611 0.87753 0.94875 0.90245 0.90886 1.42399 1.40210 1.20471 1.31865 1.19275 1.13121 1.02086 1.03281 0.91122 1.24778 0.99716 0.96716 0.99597 1.69659 1.34966 1.11112 1.42124 0.86188 0.79928 0.77384 0.82656 1.21650 1.21710 1.20733 1.23862 0.93246 1.02722 0.99974 0.89851 0.89231 0.89867 0.84979 0.85195 0.85166 0.84917 0.76277 0.89453 0.92401 0.77970 0.93376 0.91736 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 8.18 37.16 0.30 -0.82 16 2 C 0.06 0.58 3.34 -26.48 -0.09 0.49 16 3 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 4 O -0.30 -3.71 9.71 -32.86 -0.32 -4.03 16 5 C 0.06 0.75 6.19 -39.14 -0.24 0.51 16 6 C -0.12 -1.29 9.96 -39.43 -0.39 -1.68 16 7 C -0.12 -1.12 10.04 -39.59 -0.40 -1.51 16 8 C -0.12 -1.13 10.04 -39.59 -0.40 -1.53 16 9 C -0.11 -1.27 9.96 -39.43 -0.39 -1.66 16 10 C 0.07 0.87 5.35 -39.14 -0.21 0.66 16 11 O -0.28 -3.68 9.96 -46.91 -0.47 -4.14 16 12 C 0.03 0.36 3.38 -27.63 -0.09 0.26 16 13 H 0.15 1.08 8.14 -51.93 -0.42 0.66 16 14 C 0.50 6.97 6.25 -10.98 -0.07 6.90 16 15 O -0.52 -9.44 15.09 -13.90 -0.21 -9.65 16 16 N -0.70 -8.71 4.14 -53.02 -0.22 -8.93 16 17 C 0.11 1.70 4.35 -67.12 -0.29 1.40 16 18 H 0.10 1.58 7.42 -51.93 -0.39 1.19 16 19 C -0.18 -3.04 7.68 -25.92 -0.20 -3.24 16 20 C 0.17 3.09 4.36 -67.11 -0.29 2.80 16 21 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 22 N -0.71 -17.18 5.40 -52.63 -0.28 -17.46 16 23 C -0.25 -6.63 9.97 -15.06 -0.15 -6.78 16 24 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 26 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 27 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 31 C -0.16 -2.42 7.58 -25.92 -0.20 -2.62 16 32 H 0.08 0.70 6.01 -51.93 -0.31 0.39 16 33 H 0.09 0.37 7.98 -51.93 -0.41 -0.04 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 36 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 37 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.40 3.87 6.53 -40.82 -0.27 3.61 16 40 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.39 9.96 7.92 -40.82 -0.32 9.64 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.09 1.48 8.12 -51.93 -0.42 1.06 16 LS Contribution 369.67 15.07 5.57 5.57 Total: -1.00 -34.59 369.67 -9.75 -44.34 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -6.32 Total: 11.59 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -3.20 Total: -7.24 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.22 Total: -53.30 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -1.00 Total: -17.83 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.59 -9.75 -44.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021036273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.649 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds