Wall clock time and date at job start Tue Mar 31 2020 17:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.70795 * 2 1 4 4 O 1.43178 * 109.71351 * 239.40529 * 2 1 3 5 5 C 1.36105 * 116.69738 * 193.99278 * 4 2 1 6 6 C 1.38697 * 119.39509 * 197.32084 * 5 4 2 7 7 C 1.38194 * 120.06331 * 180.16466 * 6 5 4 8 8 C 1.38248 * 120.11609 * 359.74560 * 7 6 5 9 9 C 1.38197 * 120.11082 * 0.48125 * 8 7 6 10 10 C 1.38698 * 120.06643 * 359.44293 * 9 8 7 11 11 O 1.36105 * 119.40133 * 180.63707 * 10 9 8 12 12 C 1.43175 * 116.72094 * 197.02536 * 11 10 9 13 13 H 1.08995 * 109.71178 * 194.13882 * 12 11 10 14 14 C 1.50704 * 109.73641 * 73.53604 * 12 11 10 15 15 O 1.21282 * 119.99730 * 348.33219 * 14 12 11 16 16 N 1.34777 * 119.99854 * 168.32928 * 14 12 11 17 17 C 1.46495 * 120.00086 * 184.84331 * 16 14 12 18 18 H 1.09006 * 112.85227 * 336.20601 * 17 16 14 19 19 C 1.53783 * 113.61388 * 107.50401 * 17 16 14 20 20 C 1.53784 * 87.08117 * 89.11743 * 19 17 16 21 21 H 1.09001 * 113.69176 * 270.87492 * 20 19 17 22 22 N 1.46497 * 113.61286 * 139.98001 * 20 19 17 23 23 C 1.36944 * 119.99683 * 107.50946 * 22 20 19 24 24 H 1.08004 * 119.99724 * 359.97438 * 23 22 20 25 25 C 1.38803 * 119.99854 * 180.02562 * 23 22 20 26 26 N 1.31625 * 120.00340 * 359.97438 * 25 23 22 27 27 Si 1.86807 * 120.00186 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47230 * 89.99642 * 27 25 23 29 29 H 1.48494 * 109.47415 * 209.99807 * 27 25 23 30 30 H 1.48501 * 109.46579 * 330.00124 * 27 25 23 31 31 C 1.53777 * 113.61837 * 205.00349 * 17 16 14 32 32 H 1.09006 * 109.47273 * 173.49262 * 1 2 3 33 33 H 1.08998 * 109.47373 * 293.49099 * 1 2 3 34 34 H 1.08996 * 109.46741 * 53.49318 * 1 2 3 35 35 H 1.08006 * 119.97013 * 0.18033 * 6 5 4 36 36 H 1.08005 * 119.93958 * 180.02562 * 7 6 5 37 37 H 1.07995 * 119.94760 * 180.23167 * 8 7 6 38 38 H 1.08000 * 119.96553 * 179.72113 * 9 8 7 39 39 H 0.96994 * 120.00012 * 4.85359 * 16 14 12 40 40 H 1.08996 * 113.62049 * 203.66707 * 19 17 16 41 41 H 1.09004 * 113.60984 * 334.57513 * 19 17 16 42 42 H 0.96998 * 120.00401 * 287.50469 * 22 20 19 43 43 H 0.96998 * 119.99846 * 180.02562 * 26 25 23 44 44 H 1.08998 * 113.61694 * 25.43394 * 31 17 16 45 45 H 1.08998 * 113.61785 * 156.25571 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 8 2.0130 -0.6860 -1.1602 5 6 3.3300 -1.0295 -1.1635 6 6 3.9448 -1.3582 -2.3625 7 6 5.2805 -1.7123 -2.3814 8 6 6.0087 -1.7350 -1.2065 9 6 5.4010 -1.4131 -0.0078 10 6 4.0612 -1.0553 0.0180 11 8 3.4797 -0.7283 1.2043 12 6 2.0485 -0.7355 1.2433 13 1 1.7027 -0.2260 2.1427 14 6 1.5464 -2.1564 1.2394 15 8 2.3081 -3.0680 0.9948 16 7 0.2510 -2.4141 1.5078 17 6 -0.2146 -3.7995 1.6088 18 1 0.4203 -4.5000 1.0662 19 6 -0.5312 -4.2396 3.0478 20 6 -1.9591 -3.7210 2.8086 21 1 -2.0910 -2.6690 3.0613 22 7 -2.9987 -4.5787 3.3827 23 6 -3.6848 -4.1715 4.4958 24 1 -3.4591 -3.2182 4.9505 25 6 -4.6695 -4.9844 5.0400 26 7 -4.9442 -6.1464 4.4861 27 14 -5.6049 -4.4293 6.5588 28 1 -6.8108 -3.6672 6.1463 29 1 -6.0165 -5.6176 7.3485 30 1 -4.7310 -3.5618 7.3887 31 6 -1.7137 -3.9688 1.3108 32 1 -0.3634 -1.0211 -0.1165 33 1 -0.3634 0.4096 0.9425 34 1 -0.3633 0.6114 -0.8260 35 1 3.3792 -1.3371 -3.2824 36 1 5.7573 -1.9675 -3.3163 37 1 7.0533 -2.0085 -1.2249 38 1 5.9710 -1.4360 0.9093 39 1 -0.3730 -1.6824 1.6340 40 1 -0.4775 -5.3180 3.1965 41 1 0.0156 -3.6790 3.8061 42 1 -3.2012 -5.4350 2.9745 43 1 -5.6326 -6.7142 4.8663 44 1 -2.1216 -3.1898 0.6668 45 1 -1.9831 -4.9729 0.9832 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021036273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:59 Heat of formation + Delta-G solvation = -59.185476 kcal Electronic energy + Delta-G solvation = -28767.753739 eV Core-core repulsion = 24751.470920 eV Total energy + Delta-G solvation = -4016.282819 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.83351 -40.98969 -39.43181 -38.62001 -38.18965 -35.88268 -34.85206 -33.32651 -31.80677 -31.60025 -30.07277 -28.59090 -26.62133 -26.38437 -24.75122 -24.20841 -23.69105 -22.99029 -21.18549 -20.44923 -19.92970 -19.26067 -18.99350 -18.02359 -17.79400 -16.95843 -16.75240 -16.61932 -16.12522 -15.88337 -15.75951 -15.72774 -15.36797 -15.19190 -14.85322 -14.71935 -14.36120 -14.19617 -13.68187 -13.60192 -13.47372 -13.39734 -13.33489 -12.90391 -12.81256 -12.77361 -12.61240 -12.55612 -12.16704 -12.05819 -11.86513 -11.75819 -11.43537 -11.23580 -11.02099 -10.85048 -10.11398 -9.62743 -9.05403 -8.99559 -7.94465 -5.23203 0.31025 0.34070 1.28428 1.48704 1.49937 1.58139 1.71380 2.07381 2.16070 2.56906 2.76767 3.01421 3.36804 3.41239 3.57103 3.66196 3.68518 3.79499 3.93327 3.98865 4.04098 4.13614 4.28875 4.29740 4.30877 4.42472 4.49296 4.65409 4.67515 4.73749 4.86845 4.88026 4.90295 5.09153 5.12101 5.16002 5.18963 5.19174 5.23672 5.50808 5.51276 5.63624 5.70047 5.84155 6.27179 6.29880 6.41890 7.03628 7.33669 8.09928 8.31975 9.28847 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026768 B = 0.002386 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.762437 B =11731.203782 C =11881.851275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.061 3.939 3 H 0.117 0.883 4 O -0.319 6.319 5 C 0.036 3.964 6 C -0.131 4.131 7 C -0.115 4.115 8 C -0.117 4.117 9 C -0.128 4.128 10 C 0.038 3.962 11 O -0.296 6.296 12 C 0.032 3.968 13 H 0.190 0.810 14 C 0.496 3.504 15 O -0.565 6.565 16 N -0.686 5.686 17 C 0.131 3.869 18 H 0.082 0.918 19 C -0.173 4.173 20 C 0.157 3.843 21 H 0.090 0.910 22 N -0.727 5.727 23 C -0.242 4.242 24 H 0.081 0.919 25 C -0.078 4.078 26 N -0.971 5.971 27 Si 0.972 3.028 28 H -0.285 1.285 29 H -0.300 1.300 30 H -0.268 1.268 31 C -0.142 4.142 32 H 0.065 0.935 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.143 0.857 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.139 0.861 39 H 0.417 0.583 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.373 0.627 43 H 0.250 0.750 44 H 0.090 0.910 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.534 17.309 -13.606 28.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.004 3.996 3 H 0.134 0.866 4 O -0.234 6.234 5 C -0.008 4.008 6 C -0.150 4.150 7 C -0.133 4.133 8 C -0.135 4.135 9 C -0.147 4.147 10 C -0.006 4.006 11 O -0.209 6.209 12 C -0.028 4.028 13 H 0.207 0.793 14 C 0.282 3.718 15 O -0.443 6.443 16 N -0.341 5.341 17 C 0.025 3.975 18 H 0.100 0.900 19 C -0.215 4.215 20 C 0.047 3.953 21 H 0.108 0.892 22 N -0.364 5.364 23 C -0.374 4.374 24 H 0.099 0.901 25 C -0.270 4.270 26 N -0.622 5.622 27 Si 0.801 3.199 28 H -0.212 1.212 29 H -0.227 1.227 30 H -0.193 1.193 31 C -0.181 4.181 32 H 0.084 0.916 33 H 0.140 0.860 34 H 0.112 0.888 35 H 0.161 0.839 36 H 0.179 0.821 37 H 0.178 0.822 38 H 0.157 0.843 39 H 0.257 0.743 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.205 0.795 43 H 0.059 0.941 44 H 0.108 0.892 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 18.946 16.805 -13.564 28.729 hybrid contribution -1.104 -0.467 1.081 1.614 sum 17.842 16.338 -12.483 27.223 Atomic orbital electron populations 1.22203 0.88596 1.04591 1.06656 1.23397 0.98675 0.95881 0.81631 0.86561 1.86295 1.21720 1.73656 1.41738 1.19163 0.84271 1.03257 0.94158 1.20772 0.95805 1.02777 0.95613 1.21306 0.92601 0.99434 0.99959 1.21290 1.01572 0.99677 0.90936 1.20754 0.91990 1.01348 1.00606 1.19134 0.94528 1.03048 0.83928 1.86360 1.19436 1.84031 1.31069 1.23640 0.80706 0.93454 1.05006 0.79298 1.21317 0.82663 0.91860 0.75979 1.90726 1.56639 1.47840 1.49112 1.45741 1.09020 1.08499 1.70844 1.21518 0.95513 0.83387 0.97113 0.89992 1.24174 1.00323 1.00934 0.96071 1.21954 0.86474 0.94829 0.92049 0.89227 1.42611 1.41349 1.20795 1.31664 1.19717 1.12242 1.01944 1.03462 0.90073 1.25585 1.01468 0.97130 1.02828 1.69819 1.35967 1.12497 1.43868 0.85161 0.78752 0.76620 0.79356 1.21240 1.22722 1.19330 1.23674 0.93175 1.03226 0.98066 0.91570 0.86015 0.88824 0.83884 0.82067 0.82196 0.84337 0.74286 0.91377 0.92307 0.79467 0.94110 0.89183 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.18 71.98 0.59 -1.13 16 2 C 0.06 0.99 3.34 30.76 0.10 1.09 16 3 H 0.12 1.42 8.14 -2.39 -0.02 1.41 16 4 O -0.32 -7.64 9.71 -82.51 -0.80 -8.44 16 5 C 0.04 0.93 6.19 22.56 0.14 1.07 16 6 C -0.13 -2.83 9.96 22.37 0.22 -2.60 16 7 C -0.12 -1.98 10.04 22.26 0.22 -1.75 16 8 C -0.12 -2.07 10.04 22.26 0.22 -1.85 16 9 C -0.13 -2.94 9.96 22.37 0.22 -2.72 16 10 C 0.04 1.01 5.35 22.56 0.12 1.13 16 11 O -0.30 -7.61 9.96 -69.08 -0.69 -8.30 16 12 C 0.03 0.63 3.38 30.01 0.10 0.73 16 13 H 0.19 2.10 8.14 -2.39 -0.02 2.08 16 14 C 0.50 13.39 6.25 87.66 0.55 13.94 16 15 O -0.57 -20.94 15.09 15.56 0.23 -20.70 16 16 N -0.69 -15.83 4.14 -440.04 -1.82 -17.65 16 17 C 0.13 3.80 4.35 45.52 0.20 4.00 16 18 H 0.08 2.70 7.42 -2.38 -0.02 2.68 16 19 C -0.17 -5.89 7.68 31.12 0.24 -5.65 16 20 C 0.16 5.58 4.36 45.52 0.20 5.78 16 21 H 0.09 2.90 8.10 -2.39 -0.02 2.88 16 22 N -0.73 -34.98 5.40 -320.43 -1.73 -36.71 16 23 C -0.24 -12.86 9.97 84.03 0.84 -12.02 16 24 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 25 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 26 N -0.97 -58.66 13.06 21.65 0.28 -58.38 16 27 Si 0.97 44.98 29.55 68.60 2.03 47.00 16 28 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 29 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 30 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 31 C -0.14 -4.15 7.58 31.12 0.24 -3.92 16 32 H 0.07 0.95 6.01 -2.38 -0.01 0.93 16 33 H 0.12 0.47 7.98 -2.39 -0.02 0.45 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 36 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 37 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 38 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.42 6.79 6.53 -92.71 -0.61 6.18 16 40 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.37 19.61 7.92 -92.71 -0.73 18.87 16 43 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 44 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.08 2.67 8.12 -2.39 -0.02 2.65 16 Total: -1.00 -77.21 369.67 1.86 -75.35 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: -0.31 Total: 35.64 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 4.67 Total: -7.81 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -3.27 Total: -112.74 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -1.25 Total: -37.44 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -77.21 1.86 -75.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021036273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.167 kcal (2) G-P(sol) polarization free energy of solvation -77.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds