Wall clock time and date at job start Tue Mar 31 2020 17:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.70174 * 2 1 4 4 O 1.43167 * 109.74052 * 120.61034 * 2 1 3 5 5 C 1.36109 * 116.71602 * 165.87099 * 4 2 1 6 6 C 1.38697 * 119.39965 * 163.11901 * 5 4 2 7 7 C 1.38201 * 120.06995 * 179.97438 * 6 5 4 8 8 C 1.38257 * 120.10742 * 359.71210 * 7 6 5 9 9 C 1.38194 * 120.11415 * 0.18243 * 8 7 6 10 10 C 1.38700 * 120.06746 * 0.02562 * 9 8 7 11 11 O 1.36101 * 119.39297 * 179.86477 * 10 9 8 12 12 C 1.43177 * 116.69774 * 162.78855 * 11 10 9 13 13 H 1.09005 * 109.70930 * 286.53286 * 12 11 10 14 14 C 1.50692 * 109.71656 * 165.94398 * 12 11 10 15 15 O 1.21288 * 120.00076 * 348.08413 * 14 12 11 16 16 N 1.34776 * 120.00342 * 168.09071 * 14 12 11 17 17 C 1.46501 * 120.00171 * 184.84390 * 16 14 12 18 18 H 1.08998 * 112.85177 * 25.32529 * 17 16 14 19 19 C 1.53776 * 113.61687 * 156.52473 * 17 16 14 20 20 C 1.53782 * 87.08280 * 139.97697 * 19 17 16 21 21 H 1.09003 * 113.61444 * 89.11817 * 20 19 17 22 22 N 1.46493 * 113.61836 * 219.93451 * 20 19 17 23 23 C 1.36935 * 120.00497 * 205.00107 * 22 20 19 24 24 H 1.08006 * 119.99967 * 0.02562 * 23 22 20 25 25 C 1.38814 * 120.00525 * 180.02562 * 23 22 20 26 26 N 1.31615 * 119.99869 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00011 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47358 * 60.00227 * 27 25 23 29 29 H 1.48502 * 109.46991 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.47562 * 299.99747 * 27 25 23 31 31 C 1.53780 * 113.61183 * 254.13227 * 17 16 14 32 32 H 1.09007 * 109.46920 * 173.65971 * 1 2 3 33 33 H 1.08996 * 109.47236 * 293.66090 * 1 2 3 34 34 H 1.09005 * 109.46852 * 53.66371 * 1 2 3 35 35 H 1.08004 * 119.97052 * 359.61623 * 6 5 4 36 36 H 1.07991 * 119.94603 * 179.86202 * 7 6 5 37 37 H 1.08004 * 119.93626 * 180.20265 * 8 7 6 38 38 H 1.07998 * 119.96488 * 179.97438 * 9 8 7 39 39 H 0.96998 * 119.99994 * 4.83518 * 16 14 12 40 40 H 1.08992 * 113.61751 * 254.52921 * 19 17 16 41 41 H 1.09000 * 113.61527 * 25.34900 * 19 17 16 42 42 H 0.97003 * 120.00109 * 25.00215 * 22 20 19 43 43 H 0.96996 * 120.00409 * 179.97438 * 26 25 23 44 44 H 1.09002 * 113.61809 * 334.56626 * 31 17 16 45 45 H 1.09005 * 113.61533 * 105.47206 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 8 2.0136 -0.6862 1.1598 5 6 3.3300 -1.0321 1.1616 6 6 3.9435 -1.3700 2.3587 7 6 5.2793 -1.7240 2.3765 8 6 6.0062 -1.7479 1.2006 9 6 5.4004 -1.4144 0.0042 10 6 4.0612 -1.0541 -0.0200 11 8 3.4792 -0.7256 -1.2056 12 6 2.0480 -0.7343 -1.2439 13 1 1.6864 -1.7626 -1.2415 14 6 1.5683 -0.0300 -2.4867 15 8 2.3453 0.6203 -3.1534 16 7 0.2759 -0.1224 -2.8574 17 6 -0.1684 0.4728 -4.1202 18 1 0.6345 0.5608 -4.8522 19 6 -1.4492 -0.1642 -4.6845 20 6 -1.8905 1.2567 -5.0734 21 1 -1.5590 1.5605 -6.0664 22 7 -3.3152 1.5116 -4.8468 23 6 -3.9629 2.4739 -5.5744 24 1 -3.4235 3.0449 -6.3158 25 6 -5.3128 2.7158 -5.3593 26 7 -5.9703 2.0197 -4.4563 27 14 -6.1961 4.0291 -6.3515 28 1 -6.1174 3.6947 -7.7962 29 1 -7.6202 4.0900 -5.9349 30 1 -5.5532 5.3461 -6.1125 31 6 -0.9817 1.7653 -3.9396 32 1 -0.3633 -1.0214 -0.1135 33 1 -0.3633 0.4124 0.9412 34 1 -0.3633 0.6090 -0.8279 35 1 3.3783 -1.3510 3.2788 36 1 5.7556 -1.9846 3.3100 37 1 7.0491 -2.0281 1.2173 38 1 5.9706 -1.4335 -0.9129 39 1 -0.3602 -0.5831 -2.2882 40 1 -1.2725 -0.8160 -5.5400 41 1 -2.0791 -0.6255 -3.9239 42 1 -3.7998 0.9986 -4.1813 43 1 -6.9134 2.1889 -4.3056 44 1 -1.4842 1.8337 -2.9747 45 1 -0.4280 2.6689 -4.1946 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023075038.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:18 Heat of formation + Delta-G solvation = -40.042302 kcal Electronic energy + Delta-G solvation = -28109.406257 eV Core-core repulsion = 24093.953548 eV Total energy + Delta-G solvation = -4015.452709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.86069 -40.00723 -38.34527 -37.89641 -37.34248 -34.49886 -33.53533 -32.34051 -31.03715 -29.94072 -29.40214 -27.83777 -25.22983 -24.69396 -24.01560 -23.10586 -22.62170 -21.12118 -20.61804 -19.50943 -19.12998 -18.21121 -17.45847 -17.10658 -16.57302 -16.19300 -16.02033 -15.26341 -15.08005 -14.99253 -14.72464 -14.57439 -14.28775 -14.15351 -14.05465 -13.50475 -13.20472 -13.06579 -12.87274 -12.68252 -12.34599 -12.21802 -12.14292 -11.99222 -11.67736 -11.35072 -11.32723 -10.98616 -10.81830 -10.67526 -10.58501 -10.41257 -10.13924 -9.87831 -9.66414 -9.01010 -8.97991 -8.90135 -8.40239 -7.04905 -5.85241 -3.14453 0.96146 0.97208 2.15514 2.36982 2.66370 3.31791 3.40103 3.42022 3.44975 3.45670 3.76403 4.22318 4.28462 4.30184 4.52383 4.54659 4.66788 4.83062 4.90341 4.91974 5.02074 5.07118 5.11798 5.20781 5.26493 5.31698 5.40402 5.53025 5.67802 5.77835 5.80901 5.82626 5.85729 6.01365 6.12988 6.16407 6.20714 6.27584 6.32947 6.52788 6.56532 6.61429 6.94924 7.06589 7.35456 7.63872 7.99320 8.33091 9.44625 10.00212 10.34689 11.36910 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030770 B = 0.002129 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.758438 B =13146.079942 C =13705.187461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.064 3.936 3 H 0.093 0.907 4 O -0.299 6.299 5 C 0.049 3.951 6 C -0.113 4.113 7 C -0.118 4.118 8 C -0.116 4.116 9 C -0.111 4.111 10 C 0.052 3.948 11 O -0.279 6.279 12 C 0.037 3.963 13 H 0.108 0.892 14 C 0.525 3.475 15 O -0.511 6.511 16 N -0.708 5.708 17 C 0.118 3.882 18 H 0.110 0.890 19 C -0.158 4.158 20 C 0.170 3.830 21 H 0.081 0.919 22 N -0.709 5.709 23 C -0.246 4.246 24 H 0.072 0.928 25 C -0.012 4.012 26 N -0.933 5.933 27 Si 0.909 3.091 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.285 1.285 31 C -0.177 4.177 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.402 0.598 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.385 0.615 43 H 0.257 0.743 44 H 0.080 0.920 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.339 -10.392 13.659 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.007 3.993 3 H 0.110 0.890 4 O -0.214 6.214 5 C 0.004 3.996 6 C -0.132 4.132 7 C -0.136 4.136 8 C -0.134 4.134 9 C -0.130 4.130 10 C 0.007 3.993 11 O -0.193 6.193 12 C -0.023 4.023 13 H 0.126 0.874 14 C 0.308 3.692 15 O -0.386 6.386 16 N -0.362 5.362 17 C 0.014 3.986 18 H 0.128 0.872 19 C -0.198 4.198 20 C 0.057 3.943 21 H 0.099 0.901 22 N -0.347 5.347 23 C -0.377 4.377 24 H 0.090 0.910 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.739 3.261 28 H -0.212 1.212 29 H -0.217 1.217 30 H -0.212 1.212 31 C -0.219 4.219 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.238 0.762 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 20.733 -9.765 12.979 26.337 hybrid contribution -1.057 0.314 0.026 1.103 sum 19.676 -9.451 13.005 25.409 Atomic orbital electron populations 1.22097 0.90053 1.04279 1.05438 1.23024 0.97397 0.95906 0.83021 0.88952 1.86346 1.21503 1.73108 1.40417 1.18979 0.84416 1.02650 0.93558 1.20458 0.94774 1.02394 0.95571 1.20935 0.93122 1.00843 0.98687 1.20934 1.00233 1.00739 0.91524 1.20480 0.91827 1.01015 0.99666 1.19035 0.94038 1.02364 0.83864 1.86395 1.18557 1.84805 1.29530 1.23070 0.81683 1.01718 0.95877 0.87440 1.19551 0.83090 0.81344 0.85257 1.90757 1.54479 1.39445 1.53871 1.46199 1.08349 1.57838 1.23834 1.22610 0.95718 0.95635 0.84660 0.87163 1.23883 0.95144 0.99952 1.00836 1.21360 0.85663 0.91431 0.95856 0.90121 1.42331 1.03693 1.43272 1.45371 1.19264 0.92142 1.11480 1.14862 0.91009 1.24769 0.96718 0.99923 0.99376 1.69638 1.09263 1.43137 1.35997 0.86247 0.78739 0.81489 0.79583 1.21174 1.21675 1.21177 1.24390 0.98650 0.96195 1.02677 0.90638 0.89569 0.88671 0.84719 0.85019 0.84972 0.84607 0.76150 0.91253 0.89841 0.78077 0.93361 0.90117 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 8.19 37.16 0.30 -1.03 16 2 C 0.06 0.67 3.16 -26.50 -0.08 0.58 16 3 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 4 O -0.30 -3.37 10.07 -32.88 -0.33 -3.70 16 5 C 0.05 0.55 6.49 -39.14 -0.25 0.30 16 6 C -0.11 -1.03 9.96 -39.43 -0.39 -1.42 16 7 C -0.12 -0.87 10.04 -39.59 -0.40 -1.27 16 8 C -0.12 -0.89 10.04 -39.59 -0.40 -1.29 16 9 C -0.11 -1.10 9.96 -39.43 -0.39 -1.50 16 10 C 0.05 0.63 6.49 -39.14 -0.25 0.37 16 11 O -0.28 -3.83 9.64 -46.90 -0.45 -4.28 16 12 C 0.04 0.43 3.01 -27.65 -0.08 0.35 16 13 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 14 C 0.52 7.07 6.86 -10.99 -0.08 6.99 16 15 O -0.51 -9.04 16.22 -13.90 -0.23 -9.27 16 16 N -0.71 -8.28 4.28 -53.02 -0.23 -8.51 16 17 C 0.12 1.63 4.18 -67.12 -0.28 1.35 16 18 H 0.11 1.61 7.56 -51.93 -0.39 1.22 16 19 C -0.16 -2.29 7.58 -25.92 -0.20 -2.48 16 20 C 0.17 3.12 4.48 -67.03 -0.30 2.82 16 21 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 22 N -0.71 -16.76 5.41 -52.55 -0.28 -17.04 16 23 C -0.25 -6.60 9.97 -15.06 -0.15 -6.75 16 24 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 26 N -0.93 -27.22 13.06 55.49 0.72 -26.50 16 27 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 31 C -0.18 -2.88 7.70 -25.83 -0.20 -3.08 16 32 H 0.07 0.50 8.00 -51.93 -0.42 0.09 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.83 6.10 -51.93 -0.32 0.51 16 35 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 37 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 38 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 39 H 0.40 3.70 6.58 -40.82 -0.27 3.43 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 42 H 0.39 9.57 7.93 -40.82 -0.32 9.25 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 372.75 15.07 5.62 5.62 Total: -1.00 -32.91 372.75 -9.78 -42.69 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -6.33 Total: 10.61 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -3.25 Total: -6.48 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.21 Total: -52.05 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -1.01 Total: -17.25 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.91 -9.78 -42.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023075038.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.649 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds