Wall clock time and date at job start Tue Mar 31 2020 17:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.70174 * 2 1 4 4 O 1.43167 * 109.74052 * 120.61034 * 2 1 3 5 5 C 1.36109 * 116.71602 * 165.87099 * 4 2 1 6 6 C 1.38697 * 119.39965 * 163.11901 * 5 4 2 7 7 C 1.38201 * 120.06995 * 179.97438 * 6 5 4 8 8 C 1.38257 * 120.10742 * 359.71210 * 7 6 5 9 9 C 1.38194 * 120.11415 * 0.18243 * 8 7 6 10 10 C 1.38700 * 120.06746 * 0.02562 * 9 8 7 11 11 O 1.36101 * 119.39297 * 179.86477 * 10 9 8 12 12 C 1.43177 * 116.69774 * 162.78855 * 11 10 9 13 13 H 1.09005 * 109.70930 * 286.53286 * 12 11 10 14 14 C 1.50692 * 109.71656 * 165.94398 * 12 11 10 15 15 O 1.21288 * 120.00076 * 348.08413 * 14 12 11 16 16 N 1.34776 * 120.00342 * 168.09071 * 14 12 11 17 17 C 1.46501 * 120.00171 * 184.84390 * 16 14 12 18 18 H 1.08998 * 112.85177 * 25.32529 * 17 16 14 19 19 C 1.53776 * 113.61687 * 156.52473 * 17 16 14 20 20 C 1.53782 * 87.08280 * 139.97697 * 19 17 16 21 21 H 1.09003 * 113.61444 * 89.11817 * 20 19 17 22 22 N 1.46493 * 113.61836 * 219.93451 * 20 19 17 23 23 C 1.36935 * 120.00497 * 205.00107 * 22 20 19 24 24 H 1.08006 * 119.99967 * 0.02562 * 23 22 20 25 25 C 1.38814 * 120.00525 * 180.02562 * 23 22 20 26 26 N 1.31615 * 119.99869 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00011 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47358 * 60.00227 * 27 25 23 29 29 H 1.48502 * 109.46991 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.47562 * 299.99747 * 27 25 23 31 31 C 1.53780 * 113.61183 * 254.13227 * 17 16 14 32 32 H 1.09007 * 109.46920 * 173.65971 * 1 2 3 33 33 H 1.08996 * 109.47236 * 293.66090 * 1 2 3 34 34 H 1.09005 * 109.46852 * 53.66371 * 1 2 3 35 35 H 1.08004 * 119.97052 * 359.61623 * 6 5 4 36 36 H 1.07991 * 119.94603 * 179.86202 * 7 6 5 37 37 H 1.08004 * 119.93626 * 180.20265 * 8 7 6 38 38 H 1.07998 * 119.96488 * 179.97438 * 9 8 7 39 39 H 0.96998 * 119.99994 * 4.83518 * 16 14 12 40 40 H 1.08992 * 113.61751 * 254.52921 * 19 17 16 41 41 H 1.09000 * 113.61527 * 25.34900 * 19 17 16 42 42 H 0.97003 * 120.00109 * 25.00215 * 22 20 19 43 43 H 0.96996 * 120.00409 * 179.97438 * 26 25 23 44 44 H 1.09002 * 113.61809 * 334.56626 * 31 17 16 45 45 H 1.09005 * 113.61533 * 105.47206 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 8 2.0136 -0.6862 1.1598 5 6 3.3300 -1.0321 1.1616 6 6 3.9435 -1.3700 2.3587 7 6 5.2793 -1.7240 2.3765 8 6 6.0062 -1.7479 1.2006 9 6 5.4004 -1.4144 0.0042 10 6 4.0612 -1.0541 -0.0200 11 8 3.4792 -0.7256 -1.2056 12 6 2.0480 -0.7343 -1.2439 13 1 1.6864 -1.7626 -1.2415 14 6 1.5683 -0.0300 -2.4867 15 8 2.3453 0.6203 -3.1534 16 7 0.2759 -0.1224 -2.8574 17 6 -0.1684 0.4728 -4.1202 18 1 0.6345 0.5608 -4.8522 19 6 -1.4492 -0.1642 -4.6845 20 6 -1.8905 1.2567 -5.0734 21 1 -1.5590 1.5605 -6.0664 22 7 -3.3152 1.5116 -4.8468 23 6 -3.9629 2.4739 -5.5744 24 1 -3.4235 3.0449 -6.3158 25 6 -5.3128 2.7158 -5.3593 26 7 -5.9703 2.0197 -4.4563 27 14 -6.1961 4.0291 -6.3515 28 1 -6.1174 3.6947 -7.7962 29 1 -7.6202 4.0900 -5.9349 30 1 -5.5532 5.3461 -6.1125 31 6 -0.9817 1.7653 -3.9396 32 1 -0.3633 -1.0214 -0.1135 33 1 -0.3633 0.4124 0.9412 34 1 -0.3633 0.6090 -0.8279 35 1 3.3783 -1.3510 3.2788 36 1 5.7556 -1.9846 3.3100 37 1 7.0491 -2.0281 1.2173 38 1 5.9706 -1.4335 -0.9129 39 1 -0.3602 -0.5831 -2.2882 40 1 -1.2725 -0.8160 -5.5400 41 1 -2.0791 -0.6255 -3.9239 42 1 -3.7998 0.9986 -4.1813 43 1 -6.9134 2.1889 -4.3056 44 1 -1.4842 1.8337 -2.9747 45 1 -0.4280 2.6689 -4.1946 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023075038.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:17 Heat of formation + Delta-G solvation = -60.637805 kcal Electronic energy + Delta-G solvation = -28110.299345 eV Core-core repulsion = 24093.953548 eV Total energy + Delta-G solvation = -4016.345797 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.70700 -41.11404 -39.50899 -38.71109 -38.28544 -35.91477 -34.93362 -33.50335 -31.85132 -31.63427 -30.12458 -28.72914 -26.56566 -26.35659 -24.91878 -24.10058 -23.68761 -22.16009 -21.62077 -20.79720 -20.00180 -19.28509 -18.98818 -18.21376 -17.60143 -17.30181 -16.89210 -16.43983 -16.13988 -16.05184 -15.88800 -15.70209 -15.35502 -15.22691 -14.94480 -14.85908 -14.59164 -14.26842 -13.75755 -13.57055 -13.43143 -13.30438 -13.14464 -12.94330 -12.84465 -12.79170 -12.40114 -12.28840 -12.18895 -12.09944 -12.07527 -11.76104 -11.61794 -11.52195 -10.98972 -10.84320 -10.13733 -9.69168 -9.16261 -8.97788 -7.94561 -5.22066 0.26161 0.27031 1.13809 1.39070 1.49079 1.50611 1.56633 1.87572 2.42302 2.57797 2.70717 2.92576 3.33299 3.37178 3.46205 3.48886 3.66580 3.75780 3.81796 3.95734 4.03813 4.10582 4.24716 4.25265 4.30740 4.39344 4.44619 4.55359 4.65199 4.68271 4.84723 4.89106 4.90513 5.02090 5.07815 5.14792 5.16391 5.20347 5.29083 5.49157 5.50265 5.61583 5.67507 5.78580 6.26831 6.28024 6.33735 6.95268 7.35077 8.10700 8.34060 9.28000 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030770 B = 0.002129 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.758438 B =13146.079942 C =13705.187461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.067 3.933 3 H 0.075 0.925 4 O -0.304 6.304 5 C 0.026 3.974 6 C -0.119 4.119 7 C -0.109 4.109 8 C -0.109 4.109 9 C -0.125 4.125 10 C 0.023 3.977 11 O -0.308 6.308 12 C 0.040 3.960 13 H 0.130 0.870 14 C 0.529 3.471 15 O -0.558 6.558 16 N -0.692 5.692 17 C 0.135 3.865 18 H 0.107 0.893 19 C -0.138 4.138 20 C 0.150 3.850 21 H 0.078 0.922 22 N -0.721 5.721 23 C -0.245 4.245 24 H 0.075 0.925 25 C -0.073 4.073 26 N -0.966 5.966 27 Si 0.969 3.031 28 H -0.279 1.279 29 H -0.296 1.296 30 H -0.281 1.281 31 C -0.170 4.170 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.150 0.850 36 H 0.167 0.833 37 H 0.164 0.836 38 H 0.139 0.861 39 H 0.417 0.583 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.377 0.623 43 H 0.251 0.749 44 H 0.077 0.923 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.638 -11.616 14.875 28.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.010 3.990 3 H 0.093 0.907 4 O -0.219 6.219 5 C -0.019 4.019 6 C -0.138 4.138 7 C -0.127 4.127 8 C -0.127 4.127 9 C -0.144 4.144 10 C -0.022 4.022 11 O -0.222 6.222 12 C -0.020 4.020 13 H 0.147 0.853 14 C 0.314 3.686 15 O -0.435 6.435 16 N -0.347 5.347 17 C 0.030 3.970 18 H 0.125 0.875 19 C -0.177 4.177 20 C 0.039 3.961 21 H 0.096 0.904 22 N -0.359 5.359 23 C -0.377 4.377 24 H 0.093 0.907 25 C -0.266 4.266 26 N -0.616 5.616 27 Si 0.798 3.202 28 H -0.205 1.205 29 H -0.222 1.222 30 H -0.207 1.207 31 C -0.213 4.213 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.168 0.832 36 H 0.184 0.816 37 H 0.181 0.819 38 H 0.156 0.844 39 H 0.257 0.743 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.210 0.790 43 H 0.060 0.940 44 H 0.096 0.904 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 22.068 -11.013 14.205 28.461 hybrid contribution -1.281 0.668 -0.294 1.475 sum 20.786 -10.345 13.911 27.066 Atomic orbital electron populations 1.22105 0.88310 1.05532 1.05548 1.22994 0.98583 0.94838 0.82604 0.90690 1.86328 1.21838 1.73269 1.40432 1.19296 0.84515 1.03868 0.94220 1.20814 0.95719 1.01892 0.95341 1.21387 0.92388 0.98919 0.99990 1.21345 1.01633 0.99087 0.90644 1.20765 0.91309 1.01367 1.00965 1.19370 0.95007 1.04202 0.83612 1.86329 1.19449 1.85532 1.30888 1.23101 0.81337 1.02584 0.94957 0.85267 1.19886 0.82906 0.80503 0.85354 1.90735 1.55735 1.41537 1.55500 1.45995 1.08262 1.57165 1.23241 1.22270 0.95285 0.94067 0.85352 0.87493 1.23686 0.94723 0.97730 1.01600 1.21675 0.83316 0.94642 0.96426 0.90408 1.42456 1.05598 1.42807 1.45038 1.19639 0.92409 1.11385 1.14286 0.90732 1.25502 0.97707 1.02383 1.00976 1.69775 1.09054 1.44949 1.37852 0.85281 0.77163 0.79280 0.78449 1.20471 1.22246 1.20722 1.24225 0.98362 0.97159 1.01506 0.88586 0.88949 0.89230 0.83198 0.81590 0.81863 0.84351 0.74325 0.89641 0.88857 0.79047 0.94021 0.90436 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 8.19 71.98 0.59 -1.81 16 2 C 0.07 1.39 3.16 30.75 0.10 1.49 16 3 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 4 O -0.30 -6.67 10.07 -82.57 -0.83 -7.50 16 5 C 0.03 0.56 6.49 22.56 0.15 0.71 16 6 C -0.12 -1.93 9.96 22.37 0.22 -1.71 16 7 C -0.11 -1.29 10.04 22.27 0.22 -1.06 16 8 C -0.11 -1.40 10.04 22.26 0.22 -1.18 16 9 C -0.13 -2.40 9.96 22.37 0.22 -2.18 16 10 C 0.02 0.54 6.49 22.56 0.15 0.69 16 11 O -0.31 -8.62 9.64 -69.03 -0.67 -9.28 16 12 C 0.04 0.92 3.01 30.00 0.09 1.01 16 13 H 0.13 2.31 8.14 -2.38 -0.02 2.29 16 14 C 0.53 14.11 6.86 87.65 0.60 14.71 16 15 O -0.56 -20.06 16.22 15.55 0.25 -19.81 16 16 N -0.69 -15.34 4.28 -440.05 -1.89 -17.22 16 17 C 0.14 3.58 4.18 45.52 0.19 3.77 16 18 H 0.11 3.03 7.56 -2.39 -0.02 3.01 16 19 C -0.14 -3.75 7.58 31.12 0.24 -3.51 16 20 C 0.15 5.43 4.48 45.58 0.20 5.63 16 21 H 0.08 2.85 8.10 -2.39 -0.02 2.83 16 22 N -0.72 -34.10 5.41 -320.17 -1.73 -35.84 16 23 C -0.25 -13.16 9.97 84.03 0.84 -12.32 16 24 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 25 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 26 N -0.97 -57.08 13.06 21.65 0.28 -56.80 16 27 Si 0.97 45.25 29.55 68.60 2.03 47.27 16 28 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 29 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 30 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 31 C -0.17 -5.49 7.70 31.18 0.24 -5.25 16 32 H 0.10 1.06 8.00 -2.38 -0.02 1.04 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.46 6.10 -2.38 -0.01 1.44 16 35 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 36 H 0.17 0.80 8.06 -2.92 -0.02 0.78 16 37 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 38 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 39 H 0.42 6.83 6.58 -92.71 -0.61 6.22 16 40 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 41 H 0.09 2.41 8.09 -2.39 -0.02 2.39 16 42 H 0.38 18.82 7.93 -92.71 -0.73 18.09 16 43 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 44 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -72.48 372.75 1.87 -70.61 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: -0.32 Total: 33.19 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 4.74 Total: -4.63 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -3.33 Total: -109.86 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -1.25 Total: -36.59 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -72.48 1.87 -70.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023075038.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.970 kcal (2) G-P(sol) polarization free energy of solvation -72.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds