Wall clock time and date at job start Tue Mar 31 2020 17:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.74044 * 2 1 4 4 O 1.43182 * 109.70599 * 120.60897 * 2 1 3 5 5 C 1.36111 * 116.70392 * 165.92156 * 4 2 1 6 6 C 1.38695 * 119.40240 * 162.74213 * 5 4 2 7 7 C 1.38190 * 120.07022 * 179.84183 * 6 5 4 8 8 C 1.38253 * 120.11424 * 0.03077 * 7 6 5 9 9 C 1.38195 * 120.11072 * 0.05881 * 8 7 6 10 10 C 1.38710 * 120.06901 * 359.95298 * 9 8 7 11 11 O 1.36100 * 119.39630 * 179.72004 * 10 9 8 12 12 C 1.43182 * 116.70985 * 162.97919 * 11 10 9 13 13 H 1.08994 * 109.74542 * 165.90779 * 12 11 10 14 14 C 1.50706 * 109.70841 * 286.51697 * 12 11 10 15 15 O 1.21287 * 119.99892 * 9.15144 * 14 12 11 16 16 N 1.34770 * 120.00122 * 189.16150 * 14 12 11 17 17 C 1.46500 * 120.00159 * 185.50022 * 16 14 12 18 18 H 1.08998 * 112.85029 * 41.90487 * 17 16 14 19 19 C 1.53783 * 113.61736 * 173.21653 * 17 16 14 20 20 C 1.53782 * 87.08123 * 89.11049 * 19 17 16 21 21 H 1.09000 * 113.68398 * 139.99517 * 20 19 17 22 22 N 1.46500 * 113.61478 * 270.88143 * 20 19 17 23 23 C 1.36932 * 120.00228 * 257.27087 * 22 20 19 24 24 H 1.07999 * 120.00363 * 354.93290 * 23 22 20 25 25 C 1.38813 * 120.00121 * 174.93690 * 23 22 20 26 26 N 1.31620 * 120.00137 * 184.86712 * 25 23 22 27 27 Si 1.86797 * 119.99897 * 4.87029 * 25 23 22 28 28 H 1.48497 * 109.47292 * 94.75948 * 27 25 23 29 29 H 1.48495 * 109.47283 * 214.75847 * 27 25 23 30 30 H 1.48502 * 109.47068 * 334.75725 * 27 25 23 31 31 C 1.53773 * 87.08186 * 25.43507 * 20 19 17 32 32 H 1.08995 * 109.47219 * 186.37351 * 1 2 3 33 33 H 1.08994 * 109.47006 * 306.38103 * 1 2 3 34 34 H 1.09004 * 109.46662 * 66.37964 * 1 2 3 35 35 H 1.08007 * 119.96552 * 359.86360 * 6 5 4 36 36 H 1.08002 * 119.94634 * 180.02562 * 7 6 5 37 37 H 1.07997 * 119.94456 * 180.02562 * 8 7 6 38 38 H 1.08001 * 119.96978 * 179.97438 * 9 8 7 39 39 H 0.96999 * 120.00044 * 5.76480 * 16 14 12 40 40 H 1.08992 * 113.61364 * 203.66423 * 19 17 16 41 41 H 1.09008 * 113.61145 * 334.56152 * 19 17 16 42 42 H 0.97004 * 119.99764 * 77.27476 * 22 20 19 43 43 H 0.96994 * 120.00074 * 180.02562 * 26 25 23 44 44 H 1.09000 * 113.61318 * 220.01631 * 31 20 19 45 45 H 1.09005 * 113.61859 * 89.11175 * 31 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 8 2.0128 -0.6864 1.1601 5 6 3.3294 -1.0316 1.1629 6 6 3.9442 -1.3621 2.3614 7 6 5.2794 -1.7178 2.3797 8 6 6.0062 -1.7449 1.2039 9 6 5.4002 -1.4150 0.0065 10 6 4.0604 -1.0567 -0.0188 11 8 3.4789 -0.7289 -1.2049 12 6 2.0476 -0.7356 -1.2435 13 1 1.7011 -0.2263 -2.1427 14 6 1.5458 -2.1566 -1.2389 15 8 2.3168 -3.0714 -1.0392 16 7 0.2404 -2.4110 -1.4569 17 6 -0.2700 -3.7787 -1.3336 18 1 0.1391 -4.3071 -0.4724 19 6 -1.8002 -3.8781 -1.4498 20 6 -1.5962 -4.0339 -2.9661 21 1 -2.2587 -4.7685 -3.4238 22 7 -1.5732 -2.7600 -3.6891 23 6 -2.6719 -2.3560 -4.3995 24 1 -3.5246 -3.0120 -4.4948 25 6 -2.6898 -1.1033 -4.9973 26 7 -3.7803 -0.6764 -5.5982 27 14 -1.1664 -0.0235 -4.9489 28 1 -0.3804 -0.2204 -6.1934 29 1 -1.5723 1.4007 -4.8401 30 1 -0.3352 -0.3924 -3.7749 31 6 -0.1971 -4.5836 -2.6419 32 1 -0.3633 -1.0213 0.1141 33 1 -0.3633 0.6095 0.8273 34 1 -0.3633 0.4118 -0.9416 35 1 3.3787 -1.3416 3.2814 36 1 5.7560 -1.9752 3.3140 37 1 7.0494 -2.0237 1.2213 38 1 5.9703 -1.4364 -0.9105 39 1 -0.3605 -1.6891 -1.6991 40 1 -2.2177 -4.7643 -0.9720 41 1 -2.3197 -2.9612 -1.1711 42 1 -0.7796 -2.2027 -3.6647 43 1 -3.7927 0.1988 -6.0163 44 1 0.5776 -4.2364 -3.3256 45 1 -0.1763 -5.6628 -2.4900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023075039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:22 Heat of formation + Delta-G solvation = -29.026895 kcal Electronic energy + Delta-G solvation = -29993.972847 eV Core-core repulsion = 25978.997802 eV Total energy + Delta-G solvation = -4014.975045 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.86503 -39.89184 -38.30720 -37.68367 -37.12145 -34.19512 -33.48088 -32.12199 -30.82271 -30.54058 -29.20552 -27.67905 -25.33646 -24.71165 -23.81170 -23.00809 -22.76192 -21.44184 -20.09800 -19.18316 -18.94513 -18.08093 -17.69570 -17.07740 -16.66678 -15.77668 -15.64207 -15.18314 -15.06058 -14.85907 -14.75001 -14.45003 -14.10298 -13.95292 -13.85919 -13.66216 -13.22147 -12.89515 -12.85969 -12.68214 -12.26872 -12.10748 -12.05988 -11.94778 -11.87524 -11.70481 -11.24530 -11.10374 -11.02260 -10.57603 -10.51273 -10.35172 -9.91424 -9.75352 -9.66732 -9.10083 -8.77744 -8.72740 -8.13082 -7.45045 -5.93123 -3.29807 1.20168 1.21913 2.43289 2.69171 3.00661 3.06957 3.17005 3.22978 3.29524 3.64909 3.90405 4.38816 4.43741 4.46707 4.51476 4.80430 4.83187 4.87337 4.92269 5.00756 5.11492 5.19633 5.21798 5.28574 5.29969 5.37074 5.47372 5.61329 5.64782 5.72282 5.85843 6.00583 6.01341 6.04834 6.08505 6.22224 6.34044 6.39768 6.47904 6.50422 6.61257 6.73931 6.82682 7.26021 7.53489 7.86247 8.17998 8.26911 9.03657 9.75307 9.95590 11.24882 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017096 B = 0.003925 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.420325 B = 7132.606452 C = 7722.328008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.065 3.935 3 H 0.097 0.903 4 O -0.300 6.300 5 C 0.057 3.943 6 C -0.116 4.116 7 C -0.120 4.120 8 C -0.118 4.118 9 C -0.110 4.110 10 C 0.066 3.934 11 O -0.279 6.279 12 C 0.030 3.970 13 H 0.151 0.849 14 C 0.499 3.501 15 O -0.517 6.517 16 N -0.700 5.700 17 C 0.124 3.876 18 H 0.085 0.915 19 C -0.175 4.175 20 C 0.169 3.831 21 H 0.072 0.928 22 N -0.732 5.732 23 C -0.248 4.248 24 H 0.094 0.906 25 C 0.007 3.993 26 N -0.927 5.927 27 Si 0.885 3.115 28 H -0.283 1.283 29 H -0.287 1.287 30 H -0.286 1.286 31 C -0.168 4.168 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.407 0.593 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.361 0.639 43 H 0.261 0.739 44 H 0.067 0.933 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.281 0.366 15.422 21.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.008 3.992 3 H 0.115 0.885 4 O -0.215 6.215 5 C 0.012 3.988 6 C -0.134 4.134 7 C -0.138 4.138 8 C -0.137 4.137 9 C -0.128 4.128 10 C 0.021 3.979 11 O -0.192 6.192 12 C -0.031 4.031 13 H 0.169 0.831 14 C 0.283 3.717 15 O -0.392 6.392 16 N -0.355 5.355 17 C 0.019 3.981 18 H 0.103 0.897 19 C -0.216 4.216 20 C 0.058 3.942 21 H 0.090 0.910 22 N -0.374 5.374 23 C -0.378 4.378 24 H 0.111 0.889 25 C -0.189 4.189 26 N -0.574 5.574 27 Si 0.716 3.284 28 H -0.209 1.209 29 H -0.213 1.213 30 H -0.213 1.213 31 C -0.208 4.208 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.246 0.754 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.195 0.805 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.527 -0.219 15.401 21.173 hybrid contribution 0.634 1.247 -0.412 1.459 sum 15.161 1.029 14.989 21.345 Atomic orbital electron populations 1.22145 0.90268 1.05431 1.04512 1.23067 0.97460 0.95520 0.83158 0.88495 1.86325 1.21781 1.73096 1.40310 1.18895 0.83995 1.02303 0.93577 1.20392 0.94760 1.02793 0.95498 1.20859 0.93195 1.01163 0.98569 1.20868 1.00120 1.01035 0.91631 1.20411 0.92095 1.00952 0.99371 1.18868 0.93743 1.01480 0.83807 1.86406 1.18311 1.83863 1.30632 1.23353 0.81323 0.95772 1.02655 0.83146 1.20605 0.83000 0.90685 0.77390 1.90725 1.54990 1.45581 1.47950 1.46083 1.08775 1.10957 1.69720 1.21837 0.95826 0.82077 0.98334 0.89719 1.24104 0.92980 1.02604 1.01955 1.21143 0.94160 0.88834 0.90054 0.90978 1.42667 1.15850 1.20201 1.58663 1.19116 0.94568 0.99590 1.24493 0.88853 1.24689 0.96672 0.96985 1.00587 1.69695 1.26177 1.20080 1.41443 0.86611 0.83467 0.80814 0.77488 1.20915 1.21318 1.21317 1.23849 0.99762 0.99819 0.97330 0.89682 0.89856 0.89235 0.85018 0.85248 0.85214 0.84947 0.75386 0.89325 0.90577 0.80525 0.92868 0.91424 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 8.22 37.16 0.31 -1.52 16 2 C 0.07 0.81 3.34 -26.49 -0.09 0.72 16 3 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 4 O -0.30 -4.31 9.71 -32.88 -0.32 -4.63 16 5 C 0.06 0.84 6.24 -39.14 -0.24 0.59 16 6 C -0.12 -1.42 9.96 -39.43 -0.39 -1.81 16 7 C -0.12 -1.24 10.04 -39.59 -0.40 -1.64 16 8 C -0.12 -1.26 10.04 -39.59 -0.40 -1.65 16 9 C -0.11 -1.42 9.96 -39.42 -0.39 -1.82 16 10 C 0.07 1.00 5.37 -39.13 -0.21 0.79 16 11 O -0.28 -4.40 9.94 -46.96 -0.47 -4.87 16 12 C 0.03 0.43 3.37 -27.64 -0.09 0.34 16 13 H 0.15 1.91 8.14 -51.93 -0.42 1.49 16 14 C 0.50 8.40 6.29 -10.99 -0.07 8.33 16 15 O -0.52 -10.27 15.51 -14.02 -0.22 -10.49 16 16 N -0.70 -11.06 2.97 -53.01 -0.16 -11.22 16 17 C 0.12 1.93 4.02 -67.11 -0.27 1.66 16 18 H 0.08 1.31 8.01 -51.93 -0.42 0.89 16 19 C -0.18 -2.65 7.57 -25.92 -0.20 -2.85 16 20 C 0.17 3.05 4.55 -67.12 -0.31 2.74 16 21 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 22 N -0.73 -15.94 4.73 -52.64 -0.25 -16.19 16 23 C -0.25 -6.51 10.46 -15.06 -0.16 -6.66 16 24 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 25 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 26 N -0.93 -27.53 13.97 55.49 0.78 -26.75 16 27 Si 0.89 20.27 27.94 -169.99 -4.75 15.52 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 30 H -0.29 -5.67 6.24 56.52 0.35 -5.32 16 31 C -0.17 -2.70 7.61 -25.92 -0.20 -2.90 16 32 H 0.08 1.04 5.97 -51.93 -0.31 0.72 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.91 8.00 -51.93 -0.42 0.50 16 35 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.41 6.35 5.83 -40.82 -0.24 6.11 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 42 H 0.36 7.70 4.11 -40.82 -0.17 7.53 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 363.42 15.07 5.48 5.48 Total: -1.00 -32.61 363.42 -9.34 -41.95 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -6.23 Total: 16.79 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -3.20 Total: -5.59 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.37 Total: -54.16 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -1.00 Total: -19.99 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.75 Total: 15.52 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.61 -9.34 -41.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023075039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.921 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds