Wall clock time and date at job start Tue Mar 31 2020 17:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.74044 * 2 1 4 4 O 1.43182 * 109.70599 * 120.60897 * 2 1 3 5 5 C 1.36111 * 116.70392 * 165.92156 * 4 2 1 6 6 C 1.38695 * 119.40240 * 162.74213 * 5 4 2 7 7 C 1.38190 * 120.07022 * 179.84183 * 6 5 4 8 8 C 1.38253 * 120.11424 * 0.03077 * 7 6 5 9 9 C 1.38195 * 120.11072 * 0.05881 * 8 7 6 10 10 C 1.38710 * 120.06901 * 359.95298 * 9 8 7 11 11 O 1.36100 * 119.39630 * 179.72004 * 10 9 8 12 12 C 1.43182 * 116.70985 * 162.97919 * 11 10 9 13 13 H 1.08994 * 109.74542 * 165.90779 * 12 11 10 14 14 C 1.50706 * 109.70841 * 286.51697 * 12 11 10 15 15 O 1.21287 * 119.99892 * 9.15144 * 14 12 11 16 16 N 1.34770 * 120.00122 * 189.16150 * 14 12 11 17 17 C 1.46500 * 120.00159 * 185.50022 * 16 14 12 18 18 H 1.08998 * 112.85029 * 41.90487 * 17 16 14 19 19 C 1.53783 * 113.61736 * 173.21653 * 17 16 14 20 20 C 1.53782 * 87.08123 * 89.11049 * 19 17 16 21 21 H 1.09000 * 113.68398 * 139.99517 * 20 19 17 22 22 N 1.46500 * 113.61478 * 270.88143 * 20 19 17 23 23 C 1.36932 * 120.00228 * 257.27087 * 22 20 19 24 24 H 1.07999 * 120.00363 * 354.93290 * 23 22 20 25 25 C 1.38813 * 120.00121 * 174.93690 * 23 22 20 26 26 N 1.31620 * 120.00137 * 184.86712 * 25 23 22 27 27 Si 1.86797 * 119.99897 * 4.87029 * 25 23 22 28 28 H 1.48497 * 109.47292 * 94.75948 * 27 25 23 29 29 H 1.48495 * 109.47283 * 214.75847 * 27 25 23 30 30 H 1.48502 * 109.47068 * 334.75725 * 27 25 23 31 31 C 1.53773 * 87.08186 * 25.43507 * 20 19 17 32 32 H 1.08995 * 109.47219 * 186.37351 * 1 2 3 33 33 H 1.08994 * 109.47006 * 306.38103 * 1 2 3 34 34 H 1.09004 * 109.46662 * 66.37964 * 1 2 3 35 35 H 1.08007 * 119.96552 * 359.86360 * 6 5 4 36 36 H 1.08002 * 119.94634 * 180.02562 * 7 6 5 37 37 H 1.07997 * 119.94456 * 180.02562 * 8 7 6 38 38 H 1.08001 * 119.96978 * 179.97438 * 9 8 7 39 39 H 0.96999 * 120.00044 * 5.76480 * 16 14 12 40 40 H 1.08992 * 113.61364 * 203.66423 * 19 17 16 41 41 H 1.09008 * 113.61145 * 334.56152 * 19 17 16 42 42 H 0.97004 * 119.99764 * 77.27476 * 22 20 19 43 43 H 0.96994 * 120.00074 * 180.02562 * 26 25 23 44 44 H 1.09000 * 113.61318 * 220.01631 * 31 20 19 45 45 H 1.09005 * 113.61859 * 89.11175 * 31 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 8 2.0128 -0.6864 1.1601 5 6 3.3294 -1.0316 1.1629 6 6 3.9442 -1.3621 2.3614 7 6 5.2794 -1.7178 2.3797 8 6 6.0062 -1.7449 1.2039 9 6 5.4002 -1.4150 0.0065 10 6 4.0604 -1.0567 -0.0188 11 8 3.4789 -0.7289 -1.2049 12 6 2.0476 -0.7356 -1.2435 13 1 1.7011 -0.2263 -2.1427 14 6 1.5458 -2.1566 -1.2389 15 8 2.3168 -3.0714 -1.0392 16 7 0.2404 -2.4110 -1.4569 17 6 -0.2700 -3.7787 -1.3336 18 1 0.1391 -4.3071 -0.4724 19 6 -1.8002 -3.8781 -1.4498 20 6 -1.5962 -4.0339 -2.9661 21 1 -2.2587 -4.7685 -3.4238 22 7 -1.5732 -2.7600 -3.6891 23 6 -2.6719 -2.3560 -4.3995 24 1 -3.5246 -3.0120 -4.4948 25 6 -2.6898 -1.1033 -4.9973 26 7 -3.7803 -0.6764 -5.5982 27 14 -1.1664 -0.0235 -4.9489 28 1 -0.3804 -0.2204 -6.1934 29 1 -1.5723 1.4007 -4.8401 30 1 -0.3352 -0.3924 -3.7749 31 6 -0.1971 -4.5836 -2.6419 32 1 -0.3633 -1.0213 0.1141 33 1 -0.3633 0.6095 0.8273 34 1 -0.3633 0.4118 -0.9416 35 1 3.3787 -1.3416 3.2814 36 1 5.7560 -1.9752 3.3140 37 1 7.0494 -2.0237 1.2213 38 1 5.9703 -1.4364 -0.9105 39 1 -0.3605 -1.6891 -1.6991 40 1 -2.2177 -4.7643 -0.9720 41 1 -2.3197 -2.9612 -1.1711 42 1 -0.7796 -2.2027 -3.6647 43 1 -3.7927 0.1988 -6.0163 44 1 0.5776 -4.2364 -3.3256 45 1 -0.1763 -5.6628 -2.4900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023075039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:21 Heat of formation + Delta-G solvation = -49.068357 kcal Electronic energy + Delta-G solvation = -29994.841910 eV Core-core repulsion = 25978.997802 eV Total energy + Delta-G solvation = -4015.844108 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.90065 -41.14365 -39.50797 -38.66831 -38.23145 -35.69063 -34.97763 -33.37950 -32.39887 -31.70171 -30.11181 -28.72084 -26.66022 -26.30107 -24.82764 -24.42968 -23.69844 -22.72699 -21.30875 -20.56209 -19.99376 -19.50891 -19.11468 -18.07792 -17.84275 -16.97766 -16.76575 -16.55009 -16.28415 -16.11770 -15.85314 -15.77057 -15.32930 -15.27124 -14.89071 -14.80304 -14.71767 -14.19340 -13.93438 -13.75897 -13.60820 -13.53069 -13.23165 -12.94780 -12.90815 -12.82372 -12.62876 -12.59742 -12.15804 -12.04832 -11.97355 -11.76609 -11.50126 -11.17060 -11.01196 -10.97147 -10.10523 -9.65521 -9.33619 -9.09249 -8.02711 -5.37655 0.28533 0.31110 1.20202 1.24686 1.40531 1.45400 1.66575 2.02872 2.07971 2.45186 2.74321 2.91803 3.24576 3.31039 3.51636 3.53653 3.57001 3.64972 3.78464 3.88025 3.94723 4.11335 4.16526 4.24999 4.26764 4.39642 4.44447 4.56531 4.63857 4.73181 4.85066 4.85602 4.92429 4.98988 5.03142 5.16539 5.17819 5.19333 5.23958 5.48538 5.49737 5.67545 5.78918 5.81133 6.20473 6.24010 6.34602 6.92736 7.05586 7.80649 8.00559 9.18354 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017096 B = 0.003925 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.420325 B = 7132.606452 C = 7722.328008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.066 3.934 3 H 0.116 0.884 4 O -0.313 6.313 5 C 0.033 3.967 6 C -0.127 4.127 7 C -0.112 4.112 8 C -0.114 4.114 9 C -0.127 4.127 10 C 0.034 3.966 11 O -0.295 6.295 12 C 0.024 3.976 13 H 0.167 0.833 14 C 0.498 3.502 15 O -0.553 6.553 16 N -0.696 5.696 17 C 0.125 3.875 18 H 0.090 0.910 19 C -0.155 4.155 20 C 0.149 3.851 21 H 0.067 0.933 22 N -0.734 5.734 23 C -0.232 4.232 24 H 0.060 0.940 25 C -0.059 4.059 26 N -0.979 5.979 27 Si 0.947 3.053 28 H -0.293 1.293 29 H -0.286 1.286 30 H -0.243 1.243 31 C -0.157 4.157 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.146 0.854 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.138 0.862 39 H 0.409 0.591 40 H 0.119 0.881 41 H 0.068 0.932 42 H 0.364 0.636 43 H 0.258 0.742 44 H 0.048 0.952 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.369 0.346 17.750 24.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 H 0.133 0.867 4 O -0.228 6.228 5 C -0.012 4.012 6 C -0.146 4.146 7 C -0.130 4.130 8 C -0.132 4.132 9 C -0.146 4.146 10 C -0.010 4.010 11 O -0.209 6.209 12 C -0.037 4.037 13 H 0.184 0.816 14 C 0.283 3.717 15 O -0.431 6.431 16 N -0.351 5.351 17 C 0.020 3.980 18 H 0.108 0.892 19 C -0.195 4.195 20 C 0.040 3.960 21 H 0.085 0.915 22 N -0.377 5.377 23 C -0.363 4.363 24 H 0.078 0.922 25 C -0.251 4.251 26 N -0.629 5.629 27 Si 0.775 3.225 28 H -0.220 1.220 29 H -0.212 1.212 30 H -0.167 1.167 31 C -0.197 4.197 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.164 0.836 36 H 0.183 0.817 37 H 0.181 0.819 38 H 0.156 0.844 39 H 0.248 0.752 40 H 0.137 0.863 41 H 0.087 0.913 42 H 0.199 0.801 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 16.633 -0.276 17.781 24.350 hybrid contribution -0.015 1.097 -1.100 1.554 sum 16.618 0.821 16.681 23.560 Atomic orbital electron populations 1.22180 0.89226 1.04986 1.05799 1.23246 0.98168 0.95870 0.81759 0.86663 1.86286 1.22010 1.73546 1.41007 1.19226 0.84173 1.03466 0.94289 1.20777 0.95835 1.02570 0.95380 1.21330 0.92449 0.99243 0.99986 1.21307 1.01636 0.99448 0.90785 1.20751 0.91738 1.01322 1.00779 1.19227 0.94706 1.03261 0.83827 1.86360 1.18840 1.84208 1.31472 1.23543 0.81188 0.94495 1.04435 0.81560 1.21054 0.82786 0.91446 0.76401 1.90695 1.55838 1.46897 1.49651 1.46106 1.08639 1.11113 1.69244 1.21872 0.95940 0.82064 0.98120 0.89170 1.23963 0.92842 1.03698 0.99032 1.21423 0.95752 0.87299 0.91535 0.91536 1.42577 1.14615 1.21581 1.58907 1.19033 0.94627 0.98807 1.23833 0.92199 1.25465 0.99936 0.98792 1.00934 1.69879 1.28947 1.20651 1.43454 0.85565 0.79816 0.78578 0.78591 1.21995 1.21214 1.16729 1.23828 0.97380 1.01484 0.96982 0.91046 0.88129 0.88256 0.83611 0.81683 0.81934 0.84445 0.75192 0.86250 0.91281 0.80146 0.93283 0.93361 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 8.22 71.98 0.59 -2.67 16 2 C 0.07 1.54 3.34 30.75 0.10 1.65 16 3 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 4 O -0.31 -8.67 9.71 -82.59 -0.80 -9.47 16 5 C 0.03 0.94 6.24 22.56 0.14 1.08 16 6 C -0.13 -2.88 9.96 22.37 0.22 -2.65 16 7 C -0.11 -1.99 10.04 22.26 0.22 -1.76 16 8 C -0.11 -2.12 10.04 22.26 0.22 -1.89 16 9 C -0.13 -3.17 9.96 22.37 0.22 -2.95 16 10 C 0.03 1.02 5.37 22.56 0.12 1.14 16 11 O -0.30 -9.19 9.94 -68.97 -0.69 -9.87 16 12 C 0.02 0.66 3.37 30.01 0.10 0.76 16 13 H 0.17 3.88 8.14 -2.39 -0.02 3.86 16 14 C 0.50 16.21 6.29 87.66 0.55 16.76 16 15 O -0.55 -21.70 15.51 15.67 0.24 -21.45 16 16 N -0.70 -20.87 2.97 -440.02 -1.30 -22.18 16 17 C 0.12 3.63 4.02 45.52 0.18 3.81 16 18 H 0.09 2.59 8.01 -2.39 -0.02 2.57 16 19 C -0.15 -4.34 7.57 31.12 0.24 -4.11 16 20 C 0.15 5.19 4.55 45.52 0.21 5.40 16 21 H 0.07 2.38 8.12 -2.39 -0.02 2.36 16 22 N -0.73 -31.39 4.73 -320.46 -1.52 -32.90 16 23 C -0.23 -12.34 10.46 84.03 0.88 -11.46 16 24 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 25 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 26 N -0.98 -59.78 13.97 21.65 0.30 -59.48 16 27 Si 0.95 41.50 27.94 68.60 1.92 43.42 16 28 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 29 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 30 H -0.24 -8.69 6.24 99.48 0.62 -8.06 16 31 C -0.16 -4.78 7.61 31.12 0.24 -4.54 16 32 H 0.07 1.61 5.97 -2.39 -0.01 1.60 16 33 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.10 1.75 8.00 -2.38 -0.02 1.73 16 35 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 38 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 39 H 0.41 11.92 5.83 -92.71 -0.54 11.38 16 40 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 42 H 0.36 14.95 4.11 -92.71 -0.38 14.57 16 43 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 44 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.12 2.91 8.14 -2.38 -0.02 2.89 16 Total: -1.00 -73.39 363.42 2.88 -70.51 By element: Atomic # 1 Polarization: 45.67 SS G_CDS: 0.02 Total: 45.69 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 4.71 Total: -4.26 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -2.52 Total: -114.56 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -1.25 Total: -40.80 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.92 Total: 43.42 kcal Total: -73.39 2.88 -70.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023075039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.441 kcal (2) G-P(sol) polarization free energy of solvation -73.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds