Wall clock time and date at job start Tue Mar 31 2020 17:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.73707 * 2 1 4 4 O 1.43162 * 109.71866 * 239.41309 * 2 1 3 5 5 C 1.36105 * 116.71284 * 194.11071 * 4 2 1 6 6 C 1.38705 * 119.39483 * 197.00148 * 5 4 2 7 7 C 1.38198 * 120.06513 * 180.32355 * 6 5 4 8 8 C 1.38246 * 120.11479 * 0.02562 * 7 6 5 9 9 C 1.38201 * 120.11435 * 359.96237 * 8 7 6 10 10 C 1.38699 * 120.06389 * 359.97438 * 9 8 7 11 11 O 1.36108 * 119.40131 * 180.13644 * 10 9 8 12 12 C 1.43172 * 116.70708 * 197.25682 * 11 10 9 13 13 H 1.09006 * 109.70801 * 194.03911 * 12 11 10 14 14 C 1.50690 * 109.71359 * 73.45591 * 12 11 10 15 15 O 1.21285 * 119.99921 * 349.15078 * 14 12 11 16 16 N 1.34780 * 120.00135 * 169.14843 * 14 12 11 17 17 C 1.46504 * 120.00057 * 175.37865 * 16 14 12 18 18 H 1.09001 * 112.84460 * 23.80882 * 17 16 14 19 19 C 1.53777 * 113.61491 * 155.00299 * 17 16 14 20 20 C 1.53777 * 87.08173 * 89.11721 * 19 17 16 21 21 H 1.09004 * 113.61532 * 140.06194 * 20 19 17 22 22 N 1.46498 * 113.61777 * 270.88537 * 20 19 17 23 23 C 1.36930 * 120.00144 * 203.47028 * 22 20 19 24 24 H 1.08001 * 120.00039 * 359.97438 * 23 22 20 25 25 C 1.38813 * 120.00331 * 179.72547 * 23 22 20 26 26 N 1.31623 * 119.99596 * 0.27296 * 25 23 22 27 27 Si 1.86800 * 120.00288 * 180.27371 * 25 23 22 28 28 H 1.48500 * 109.46949 * 59.99872 * 27 25 23 29 29 H 1.48504 * 109.47153 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.47250 * 299.99839 * 27 25 23 31 31 C 1.53777 * 87.17053 * 25.47579 * 20 19 17 32 32 H 1.08995 * 109.46914 * 293.22400 * 1 2 3 33 33 H 1.09004 * 109.46739 * 53.22482 * 1 2 3 34 34 H 1.08992 * 109.46883 * 173.22499 * 1 2 3 35 35 H 1.08002 * 119.96629 * 0.33909 * 6 5 4 36 36 H 1.07999 * 119.93948 * 179.97438 * 7 6 5 37 37 H 1.07998 * 119.94353 * 179.97438 * 8 7 6 38 38 H 1.07996 * 119.96576 * 179.97438 * 9 8 7 39 39 H 0.96992 * 119.99978 * 355.39036 * 16 14 12 40 40 H 1.09002 * 113.61498 * 334.57174 * 19 17 16 41 41 H 1.08993 * 113.61940 * 203.67191 * 19 17 16 42 42 H 0.97001 * 119.99735 * 23.47191 * 22 20 19 43 43 H 0.97003 * 119.99895 * 179.97438 * 26 25 23 44 44 H 1.09001 * 113.61545 * 89.07142 * 31 20 19 45 45 H 1.09002 * 113.61600 * 219.97131 * 31 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 8 2.0130 -0.6858 -1.1602 5 6 3.3294 -1.0315 -1.1627 6 6 3.9430 -1.3667 -2.3606 7 6 5.2772 -1.7264 -2.3782 8 6 6.0038 -1.7538 -1.2024 9 6 5.3987 -1.4208 -0.0054 10 6 4.0603 -1.0576 0.0191 11 8 3.4786 -0.7295 1.2051 12 6 2.0474 -0.7361 1.2434 13 1 1.7014 -0.2273 2.1432 14 6 1.5453 -2.1569 1.2382 15 8 2.3102 -3.0695 1.0079 16 7 0.2462 -2.4135 1.4895 17 6 -0.2635 -3.7830 1.3851 18 1 0.5155 -4.5351 1.5101 19 6 -1.5134 -4.0422 2.2426 20 6 -2.3429 -3.5844 1.0314 21 1 -3.2441 -4.1761 0.8706 22 7 -2.5974 -2.1419 1.0058 23 6 -3.6712 -1.6483 0.3142 24 1 -4.3303 -2.3223 -0.2127 25 6 -3.9156 -0.2820 0.2946 26 7 -3.1121 0.5396 0.9363 27 14 -5.3849 0.3907 -0.6425 28 1 -6.6340 -0.1892 -0.0870 29 1 -5.4234 1.8691 -0.5076 30 1 -5.2657 0.0271 -2.0773 31 6 -1.1574 -4.0165 0.1525 32 1 -0.3633 0.4052 0.9444 33 1 -0.3633 0.6153 -0.8232 34 1 -0.3633 -1.0204 -0.1212 35 1 3.3776 -1.3462 -3.2806 36 1 5.7529 -1.9873 -3.3121 37 1 7.0462 -2.0357 -1.2193 38 1 5.9684 -1.4434 0.9117 39 1 -0.3512 -1.6914 1.7393 40 1 -1.5967 -3.3799 3.1043 41 1 -1.6572 -5.0917 2.4989 42 1 -2.0052 -1.5365 1.4787 43 1 -3.2826 1.4944 0.9223 44 1 -1.2041 -5.0592 -0.1618 45 1 -0.9535 -3.3336 -0.6723 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023075040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:27 Heat of formation + Delta-G solvation = -32.170144 kcal Electronic energy + Delta-G solvation = -30249.184823 eV Core-core repulsion = 26234.073476 eV Total energy + Delta-G solvation = -4015.111347 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.61549 -39.70717 -38.13469 -37.42565 -36.92920 -33.84394 -33.44396 -31.85135 -30.61343 -29.95807 -28.91661 -27.29959 -25.18703 -24.62000 -23.42957 -23.09285 -22.53485 -21.34909 -19.95881 -18.91525 -18.67131 -17.94023 -17.27662 -16.85276 -16.32495 -15.68429 -15.30805 -14.98091 -14.82560 -14.73975 -14.27093 -14.22275 -14.17051 -13.75116 -13.47918 -13.44445 -13.10719 -12.82379 -12.31818 -12.16837 -12.06753 -12.00859 -11.81967 -11.59274 -11.50662 -11.36086 -10.95337 -10.90258 -10.77887 -10.31825 -10.25592 -10.20354 -9.95204 -9.67156 -9.60254 -8.99717 -8.61553 -8.52700 -7.90913 -7.15029 -5.95433 -3.23091 1.38568 1.42390 2.62706 2.92749 3.32258 3.35598 3.39907 3.40803 3.42594 3.84076 4.22318 4.45095 4.67328 4.71000 4.85375 5.01025 5.03886 5.15729 5.19099 5.24534 5.33576 5.36474 5.44162 5.47062 5.49747 5.77666 5.86574 5.87561 6.07979 6.15844 6.16819 6.23009 6.24242 6.27825 6.32296 6.49647 6.51621 6.64573 6.69826 6.74882 6.85895 7.02326 7.03717 7.51762 7.59385 7.73551 8.23961 8.37648 9.35396 9.87289 10.22001 11.26943 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.004037 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.047628 B = 6933.569177 C = 7809.396145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 H 0.092 0.908 4 O -0.298 6.298 5 C 0.063 3.937 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.123 4.123 9 C -0.111 4.111 10 C 0.065 3.935 11 O -0.284 6.284 12 C 0.033 3.967 13 H 0.151 0.849 14 C 0.502 3.498 15 O -0.527 6.527 16 N -0.694 5.694 17 C 0.121 3.879 18 H 0.092 0.908 19 C -0.167 4.167 20 C 0.164 3.836 21 H 0.067 0.933 22 N -0.703 5.703 23 C -0.242 4.242 24 H 0.072 0.928 25 C -0.005 4.005 26 N -0.932 5.932 27 Si 0.908 3.092 28 H -0.287 1.287 29 H -0.291 1.291 30 H -0.286 1.286 31 C -0.186 4.186 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.409 0.591 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.377 0.623 43 H 0.257 0.743 44 H 0.078 0.922 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.049 -2.649 -0.436 13.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.005 3.995 3 H 0.109 0.891 4 O -0.213 6.213 5 C 0.018 3.982 6 C -0.137 4.137 7 C -0.138 4.138 8 C -0.142 4.142 9 C -0.130 4.130 10 C 0.020 3.980 11 O -0.197 6.197 12 C -0.027 4.027 13 H 0.168 0.832 14 C 0.286 3.714 15 O -0.403 6.403 16 N -0.350 5.350 17 C 0.016 3.984 18 H 0.110 0.890 19 C -0.206 4.206 20 C 0.052 3.948 21 H 0.085 0.915 22 N -0.344 5.344 23 C -0.373 4.373 24 H 0.090 0.910 25 C -0.202 4.202 26 N -0.580 5.580 27 Si 0.739 3.261 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 C -0.228 4.228 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.249 0.751 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.213 0.787 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.356 -3.192 -0.659 13.748 hybrid contribution -1.031 1.001 -0.138 1.443 sum 12.325 -2.191 -0.797 12.544 Atomic orbital electron populations 1.22067 0.86917 1.06179 1.05347 1.23333 0.99099 0.94721 0.82378 0.89074 1.86401 1.21166 1.72900 1.40793 1.18967 0.84411 1.01375 0.93477 1.20420 0.94757 1.02836 0.95704 1.20832 0.93248 1.01252 0.98465 1.20816 0.99976 1.01639 0.91722 1.20357 0.92167 1.01280 0.99189 1.18832 0.93676 1.01645 0.83880 1.86353 1.18674 1.83979 1.30666 1.23318 0.80910 0.95489 1.02997 0.83200 1.20645 0.82862 0.90755 0.77124 1.90703 1.55523 1.45888 1.48214 1.46003 1.09228 1.10730 1.69055 1.21865 0.95107 0.83334 0.98079 0.89045 1.23848 0.96068 1.01828 0.98891 1.21223 0.94482 0.87071 0.92073 0.91532 1.42208 1.31747 0.99700 1.60782 1.19217 1.02924 0.90951 1.24205 0.90980 1.24645 0.99043 0.95879 1.00592 1.69555 1.38913 1.02755 1.46753 0.86262 0.82449 0.77771 0.79630 1.21348 1.21696 1.21301 1.24330 0.99430 1.00988 0.98030 0.88345 0.90582 0.89204 0.85065 0.85432 0.85437 0.85173 0.75128 0.91079 0.89040 0.78717 0.93327 0.90399 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.22 37.16 0.31 -2.23 16 2 C 0.06 0.97 3.34 -26.48 -0.09 0.88 16 3 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 4 O -0.30 -5.32 9.71 -32.87 -0.32 -5.64 16 5 C 0.06 1.07 6.20 -39.14 -0.24 0.83 16 6 C -0.12 -1.73 9.96 -39.42 -0.39 -2.12 16 7 C -0.12 -1.45 10.04 -39.59 -0.40 -1.85 16 8 C -0.12 -1.48 10.04 -39.59 -0.40 -1.87 16 9 C -0.11 -1.57 9.96 -39.42 -0.39 -1.96 16 10 C 0.06 1.07 5.35 -39.14 -0.21 0.86 16 11 O -0.28 -4.69 9.96 -46.95 -0.47 -5.16 16 12 C 0.03 0.52 3.37 -27.64 -0.09 0.42 16 13 H 0.15 1.84 8.14 -51.93 -0.42 1.42 16 14 C 0.50 8.94 6.26 -10.99 -0.07 8.87 16 15 O -0.53 -10.97 15.11 -13.95 -0.21 -11.18 16 16 N -0.69 -11.68 3.69 -52.88 -0.20 -11.87 16 17 C 0.12 2.00 4.36 -66.98 -0.29 1.71 16 18 H 0.09 1.54 7.42 -51.93 -0.39 1.16 16 19 C -0.17 -2.55 7.58 -25.92 -0.20 -2.74 16 20 C 0.16 2.98 4.55 -67.12 -0.31 2.67 16 21 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 22 N -0.70 -15.32 5.13 -52.64 -0.27 -15.59 16 23 C -0.24 -6.02 9.97 -15.06 -0.15 -6.17 16 24 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 25 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 26 N -0.93 -23.63 13.06 55.49 0.72 -22.91 16 27 Si 0.91 20.73 29.55 -169.99 -5.02 15.70 16 28 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 30 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 31 C -0.19 -3.21 7.70 -25.78 -0.20 -3.41 16 32 H 0.10 1.67 7.99 -51.93 -0.41 1.25 16 33 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.09 1.74 5.88 -51.93 -0.31 1.43 16 35 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.41 6.90 4.47 -40.82 -0.18 6.72 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.38 8.21 5.17 -40.82 -0.21 8.00 16 43 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 44 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 364.35 15.07 5.49 5.49 Total: -1.00 -29.39 364.35 -9.60 -38.99 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -6.12 Total: 18.50 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -3.22 Total: -6.34 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.26 Total: -50.37 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -1.00 Total: -21.98 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.39 -9.60 -38.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023075040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.823 kcal (2) G-P(sol) polarization free energy of solvation -29.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds