Wall clock time and date at job start Tue Mar 31 2020 17:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.73707 * 2 1 4 4 O 1.43162 * 109.71866 * 239.41309 * 2 1 3 5 5 C 1.36105 * 116.71284 * 194.11071 * 4 2 1 6 6 C 1.38705 * 119.39483 * 197.00148 * 5 4 2 7 7 C 1.38198 * 120.06513 * 180.32355 * 6 5 4 8 8 C 1.38246 * 120.11479 * 0.02562 * 7 6 5 9 9 C 1.38201 * 120.11435 * 359.96237 * 8 7 6 10 10 C 1.38699 * 120.06389 * 359.97438 * 9 8 7 11 11 O 1.36108 * 119.40131 * 180.13644 * 10 9 8 12 12 C 1.43172 * 116.70708 * 197.25682 * 11 10 9 13 13 H 1.09006 * 109.70801 * 194.03911 * 12 11 10 14 14 C 1.50690 * 109.71359 * 73.45591 * 12 11 10 15 15 O 1.21285 * 119.99921 * 349.15078 * 14 12 11 16 16 N 1.34780 * 120.00135 * 169.14843 * 14 12 11 17 17 C 1.46504 * 120.00057 * 175.37865 * 16 14 12 18 18 H 1.09001 * 112.84460 * 23.80882 * 17 16 14 19 19 C 1.53777 * 113.61491 * 155.00299 * 17 16 14 20 20 C 1.53777 * 87.08173 * 89.11721 * 19 17 16 21 21 H 1.09004 * 113.61532 * 140.06194 * 20 19 17 22 22 N 1.46498 * 113.61777 * 270.88537 * 20 19 17 23 23 C 1.36930 * 120.00144 * 203.47028 * 22 20 19 24 24 H 1.08001 * 120.00039 * 359.97438 * 23 22 20 25 25 C 1.38813 * 120.00331 * 179.72547 * 23 22 20 26 26 N 1.31623 * 119.99596 * 0.27296 * 25 23 22 27 27 Si 1.86800 * 120.00288 * 180.27371 * 25 23 22 28 28 H 1.48500 * 109.46949 * 59.99872 * 27 25 23 29 29 H 1.48504 * 109.47153 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.47250 * 299.99839 * 27 25 23 31 31 C 1.53777 * 87.17053 * 25.47579 * 20 19 17 32 32 H 1.08995 * 109.46914 * 293.22400 * 1 2 3 33 33 H 1.09004 * 109.46739 * 53.22482 * 1 2 3 34 34 H 1.08992 * 109.46883 * 173.22499 * 1 2 3 35 35 H 1.08002 * 119.96629 * 0.33909 * 6 5 4 36 36 H 1.07999 * 119.93948 * 179.97438 * 7 6 5 37 37 H 1.07998 * 119.94353 * 179.97438 * 8 7 6 38 38 H 1.07996 * 119.96576 * 179.97438 * 9 8 7 39 39 H 0.96992 * 119.99978 * 355.39036 * 16 14 12 40 40 H 1.09002 * 113.61498 * 334.57174 * 19 17 16 41 41 H 1.08993 * 113.61940 * 203.67191 * 19 17 16 42 42 H 0.97001 * 119.99735 * 23.47191 * 22 20 19 43 43 H 0.97003 * 119.99895 * 179.97438 * 26 25 23 44 44 H 1.09001 * 113.61545 * 89.07142 * 31 20 19 45 45 H 1.09002 * 113.61600 * 219.97131 * 31 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 8 2.0130 -0.6858 -1.1602 5 6 3.3294 -1.0315 -1.1627 6 6 3.9430 -1.3667 -2.3606 7 6 5.2772 -1.7264 -2.3782 8 6 6.0038 -1.7538 -1.2024 9 6 5.3987 -1.4208 -0.0054 10 6 4.0603 -1.0576 0.0191 11 8 3.4786 -0.7295 1.2051 12 6 2.0474 -0.7361 1.2434 13 1 1.7014 -0.2273 2.1432 14 6 1.5453 -2.1569 1.2382 15 8 2.3102 -3.0695 1.0079 16 7 0.2462 -2.4135 1.4895 17 6 -0.2635 -3.7830 1.3851 18 1 0.5155 -4.5351 1.5101 19 6 -1.5134 -4.0422 2.2426 20 6 -2.3429 -3.5844 1.0314 21 1 -3.2441 -4.1761 0.8706 22 7 -2.5974 -2.1419 1.0058 23 6 -3.6712 -1.6483 0.3142 24 1 -4.3303 -2.3223 -0.2127 25 6 -3.9156 -0.2820 0.2946 26 7 -3.1121 0.5396 0.9363 27 14 -5.3849 0.3907 -0.6425 28 1 -6.6340 -0.1892 -0.0870 29 1 -5.4234 1.8691 -0.5076 30 1 -5.2657 0.0271 -2.0773 31 6 -1.1574 -4.0165 0.1525 32 1 -0.3633 0.4052 0.9444 33 1 -0.3633 0.6153 -0.8232 34 1 -0.3633 -1.0204 -0.1212 35 1 3.3776 -1.3462 -3.2806 36 1 5.7529 -1.9873 -3.3121 37 1 7.0462 -2.0357 -1.2193 38 1 5.9684 -1.4434 0.9117 39 1 -0.3512 -1.6914 1.7393 40 1 -1.5967 -3.3799 3.1043 41 1 -1.6572 -5.0917 2.4989 42 1 -2.0052 -1.5365 1.4787 43 1 -3.2826 1.4944 0.9223 44 1 -1.2041 -5.0592 -0.1618 45 1 -0.9535 -3.3336 -0.6723 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023075040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:26 Heat of formation + Delta-G solvation = -48.656781 kcal Electronic energy + Delta-G solvation = -30249.899737 eV Core-core repulsion = 26234.073476 eV Total energy + Delta-G solvation = -4015.826261 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.84137 -41.05283 -39.44446 -38.63026 -38.17292 -35.46998 -34.94168 -33.22381 -31.77177 -31.62016 -30.05710 -28.58592 -26.56462 -26.29401 -24.72042 -24.50562 -23.64520 -22.71472 -21.29303 -20.26351 -19.90369 -19.32203 -18.89887 -18.03193 -17.66148 -16.99793 -16.64706 -16.45415 -16.25311 -15.87185 -15.64072 -15.59022 -15.55265 -14.98026 -14.86125 -14.85499 -14.64173 -14.07892 -13.68014 -13.53378 -13.47436 -13.29965 -13.20667 -12.85058 -12.76255 -12.74023 -12.55400 -12.51634 -12.16319 -12.03916 -11.73066 -11.70559 -11.42971 -11.17964 -10.98704 -10.76688 -10.00654 -9.62503 -9.05033 -8.93490 -7.87687 -5.13391 0.31198 0.34615 1.26177 1.52463 1.54463 1.58090 1.72623 2.09725 2.17580 2.60521 2.77197 3.00456 3.34757 3.44774 3.58315 3.64751 3.68810 3.84397 3.97718 3.98117 4.03767 4.13803 4.28867 4.31083 4.38218 4.43169 4.50789 4.72441 4.77665 4.81449 4.86712 4.93170 4.96227 5.06263 5.19546 5.20320 5.21359 5.33045 5.43248 5.50292 5.56680 5.67351 5.71695 5.85629 6.29330 6.35446 6.41206 6.99471 7.43399 8.11504 8.38472 9.33202 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.004037 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.047628 B = 6933.569177 C = 7809.396145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.066 3.934 3 H 0.109 0.891 4 O -0.322 6.322 5 C 0.031 3.969 6 C -0.135 4.135 7 C -0.112 4.112 8 C -0.114 4.114 9 C -0.122 4.122 10 C 0.036 3.964 11 O -0.290 6.290 12 C 0.035 3.965 13 H 0.181 0.819 14 C 0.500 3.500 15 O -0.561 6.561 16 N -0.689 5.689 17 C 0.118 3.882 18 H 0.092 0.908 19 C -0.143 4.143 20 C 0.149 3.851 21 H 0.069 0.931 22 N -0.711 5.711 23 C -0.248 4.248 24 H 0.068 0.932 25 C -0.048 4.048 26 N -0.942 5.942 27 Si 0.956 3.044 28 H -0.286 1.286 29 H -0.296 1.296 30 H -0.290 1.290 31 C -0.178 4.178 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.137 0.863 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.145 0.855 39 H 0.409 0.591 40 H 0.070 0.930 41 H 0.126 0.874 42 H 0.375 0.625 43 H 0.252 0.748 44 H 0.102 0.898 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.466 -3.514 -0.318 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.010 3.990 3 H 0.127 0.873 4 O -0.238 6.238 5 C -0.014 4.014 6 C -0.153 4.153 7 C -0.130 4.130 8 C -0.132 4.132 9 C -0.141 4.141 10 C -0.009 4.009 11 O -0.204 6.204 12 C -0.025 4.025 13 H 0.198 0.802 14 C 0.285 3.715 15 O -0.439 6.439 16 N -0.344 5.344 17 C 0.013 3.987 18 H 0.110 0.890 19 C -0.182 4.182 20 C 0.038 3.962 21 H 0.087 0.913 22 N -0.352 5.352 23 C -0.380 4.380 24 H 0.086 0.914 25 C -0.243 4.243 26 N -0.591 5.591 27 Si 0.787 3.213 28 H -0.213 1.213 29 H -0.222 1.222 30 H -0.217 1.217 31 C -0.220 4.220 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.155 0.845 36 H 0.182 0.818 37 H 0.185 0.815 38 H 0.163 0.837 39 H 0.248 0.752 40 H 0.088 0.912 41 H 0.144 0.856 42 H 0.211 0.789 43 H 0.061 0.939 44 H 0.120 0.880 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 14.768 -4.082 -0.537 15.331 hybrid contribution -1.405 1.181 -0.260 1.854 sum 13.363 -2.901 -0.797 13.697 Atomic orbital electron populations 1.21841 0.88186 1.04230 1.04659 1.23296 0.97850 0.95597 0.82281 0.87312 1.86334 1.22323 1.73554 1.41576 1.19334 0.84125 1.03216 0.94688 1.20763 0.96136 1.03137 0.95297 1.21301 0.92132 0.99311 1.00222 1.21319 1.01655 0.99530 0.90657 1.20767 0.91453 1.00968 1.00899 1.19206 0.94768 1.03183 0.83702 1.86329 1.18765 1.84212 1.31054 1.23441 0.80870 0.94214 1.04025 0.80246 1.21052 0.82736 0.91443 0.76248 1.90668 1.56321 1.47096 1.49846 1.46017 1.09017 1.10950 1.68440 1.21946 0.95510 0.83228 0.98046 0.88999 1.23752 0.93511 1.03685 0.97277 1.21444 0.95140 0.85321 0.94249 0.91303 1.42254 1.31077 1.01299 1.60550 1.19424 1.03456 0.91111 1.23989 0.91402 1.25151 1.00938 0.96319 1.01854 1.69641 1.39578 1.02374 1.47510 0.85505 0.80574 0.76778 0.78453 1.21264 1.22223 1.21715 1.24267 0.99105 1.01582 0.97048 0.88235 0.92120 0.91468 0.84549 0.81798 0.81528 0.83707 0.75161 0.91174 0.85626 0.78934 0.93880 0.87956 0.94214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 8.22 71.98 0.59 -4.09 16 2 C 0.07 2.13 3.34 30.75 0.10 2.23 16 3 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 4 O -0.32 -11.89 9.71 -82.51 -0.80 -12.69 16 5 C 0.03 1.06 6.20 22.56 0.14 1.20 16 6 C -0.13 -3.85 9.96 22.37 0.22 -3.62 16 7 C -0.11 -2.42 10.04 22.26 0.22 -2.20 16 8 C -0.11 -2.38 10.04 22.26 0.22 -2.16 16 9 C -0.12 -3.27 9.96 22.37 0.22 -3.04 16 10 C 0.04 1.18 5.35 22.56 0.12 1.30 16 11 O -0.29 -9.58 9.96 -69.09 -0.69 -10.26 16 12 C 0.03 1.08 3.37 30.00 0.10 1.18 16 13 H 0.18 4.29 8.14 -2.38 -0.02 4.27 16 14 C 0.50 17.95 6.26 87.65 0.55 18.50 16 15 O -0.56 -23.56 15.11 15.61 0.24 -23.33 16 16 N -0.69 -23.26 3.69 -439.61 -1.62 -24.88 16 17 C 0.12 3.80 4.36 45.61 0.20 4.00 16 18 H 0.09 3.00 7.42 -2.39 -0.02 2.99 16 19 C -0.14 -4.09 7.58 31.12 0.24 -3.85 16 20 C 0.15 5.31 4.55 45.52 0.21 5.51 16 21 H 0.07 2.42 8.11 -2.39 -0.02 2.40 16 22 N -0.71 -31.04 5.13 -320.46 -1.64 -32.69 16 23 C -0.25 -12.40 9.97 84.03 0.84 -11.56 16 24 H 0.07 3.38 7.83 -2.91 -0.02 3.35 16 25 C -0.05 -2.45 5.50 84.86 0.47 -1.98 16 26 N -0.94 -48.20 13.06 21.65 0.28 -47.91 16 27 Si 0.96 42.89 29.55 68.60 2.03 44.91 16 28 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 29 H -0.30 -13.42 7.11 99.48 0.71 -12.72 16 30 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 31 C -0.18 -6.08 7.70 31.21 0.24 -5.84 16 32 H 0.10 3.45 7.99 -2.39 -0.02 3.43 16 33 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.07 2.70 5.88 -2.39 -0.01 2.68 16 35 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 36 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 39 H 0.41 13.91 4.47 -92.71 -0.41 13.49 16 40 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.38 16.48 5.17 -92.71 -0.48 16.00 16 43 H 0.25 12.83 8.31 -92.71 -0.77 12.06 16 44 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 45 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -64.42 364.35 2.61 -61.81 By element: Atomic # 1 Polarization: 49.32 SS G_CDS: 0.13 Total: 49.45 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 4.68 Total: -4.42 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -2.98 Total: -105.48 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -1.25 Total: -46.28 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -64.42 2.61 -61.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023075040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.155 kcal (2) G-P(sol) polarization free energy of solvation -64.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds