Wall clock time and date at job start Tue Mar 31 2020 17:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.70855 * 2 1 4 4 O 1.43180 * 109.74533 * 239.38937 * 2 1 3 5 5 C 1.36114 * 116.69442 * 194.04011 * 4 2 1 6 6 C 1.38698 * 119.39426 * 197.20172 * 5 4 2 7 7 C 1.38192 * 120.06688 * 180.19489 * 6 5 4 8 8 C 1.38254 * 120.11564 * 359.97438 * 7 6 5 9 9 C 1.38196 * 120.10919 * 359.95456 * 8 7 6 10 10 C 1.38703 * 120.06612 * 0.02571 * 9 8 7 11 11 O 1.36109 * 119.39580 * 180.19672 * 10 9 8 12 12 C 1.43174 * 116.71848 * 197.04753 * 11 10 9 13 13 H 1.08998 * 109.71142 * 73.56701 * 12 11 10 14 14 C 1.50701 * 109.71189 * 194.14994 * 12 11 10 15 15 O 1.21286 * 119.99448 * 9.40448 * 14 12 11 16 16 N 1.34768 * 120.00215 * 189.41108 * 14 12 11 17 17 C 1.46501 * 119.99923 * 184.78500 * 16 14 12 18 18 C 1.53000 * 109.47100 * 179.97438 * 17 16 14 19 19 C 1.53944 * 113.74213 * 271.67043 * 18 17 16 20 20 N 1.47574 * 86.12006 * 222.04615 * 19 18 17 21 21 C 1.36939 * 134.49634 * 204.64318 * 20 19 18 22 22 H 1.07997 * 120.00281 * 184.66750 * 21 20 19 23 23 C 1.38815 * 120.00041 * 4.65799 * 21 20 19 24 24 N 1.31621 * 119.99755 * 354.54889 * 23 21 20 25 25 Si 1.86796 * 120.00086 * 174.54182 * 23 21 20 26 26 H 1.48504 * 109.46880 * 95.00317 * 25 23 21 27 27 H 1.48501 * 109.47118 * 214.99955 * 25 23 21 28 28 H 1.48495 * 109.47344 * 335.00170 * 25 23 21 29 29 C 1.47580 * 91.01650 * 24.64047 * 20 19 18 30 30 H 1.08996 * 109.47079 * 305.90343 * 1 2 3 31 31 H 1.09003 * 109.46935 * 65.89718 * 1 2 3 32 32 H 1.08992 * 109.47081 * 185.90020 * 1 2 3 33 33 H 1.08005 * 119.97101 * 0.18715 * 6 5 4 34 34 H 1.08005 * 119.94570 * 180.02562 * 7 6 5 35 35 H 1.07993 * 119.94785 * 180.23129 * 8 7 6 36 36 H 1.08002 * 119.96827 * 180.02562 * 9 8 7 37 37 H 0.96998 * 120.00080 * 4.78048 * 16 14 12 38 38 H 1.09003 * 109.47209 * 299.99706 * 17 16 14 39 39 H 1.08995 * 109.47492 * 59.99693 * 17 16 14 40 40 H 1.09002 * 112.94608 * 43.40381 * 18 17 16 41 41 H 1.09000 * 113.77144 * 336.35324 * 19 18 17 42 42 H 1.09008 * 113.76956 * 107.74687 * 19 18 17 43 43 H 0.96995 * 120.00017 * 179.97438 * 24 23 21 44 44 H 1.08997 * 113.77368 * 221.05617 * 29 20 19 45 45 H 1.09003 * 113.87131 * 89.66612 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 8 2.0137 -0.6862 -1.1598 5 6 3.3307 -1.0302 -1.1619 6 6 3.9459 -1.3615 -2.3600 7 6 5.2812 -1.7168 -2.3776 8 6 6.0078 -1.7425 -1.2017 9 6 5.4012 -1.4121 -0.0047 10 6 4.0614 -1.0543 0.0199 11 8 3.4789 -0.7275 1.2058 12 6 2.0476 -0.7352 1.2437 13 1 1.6853 -1.7632 1.2411 14 6 1.5683 -0.0307 2.4867 15 8 2.3547 0.5810 3.1784 16 7 0.2659 -0.0805 2.8297 17 6 -0.2191 0.6894 3.9778 18 6 -1.7220 0.4588 4.1483 19 6 -2.5947 1.4352 3.3391 20 7 -3.4480 1.5110 4.5408 21 6 -4.7640 1.8153 4.7657 22 1 -5.1400 1.8723 5.7765 23 6 -5.6149 2.0507 3.6945 24 7 -5.1356 2.0876 2.4692 25 14 -7.4400 2.3150 3.9919 26 1 -7.7218 3.7705 4.0779 27 1 -8.2147 1.7263 2.8700 28 1 -7.8344 1.6584 5.2641 29 6 -2.3133 1.1271 5.4028 30 1 -0.3633 0.6026 0.8324 31 1 -0.3633 0.4197 -0.9381 32 1 -0.3633 -1.0221 0.1056 33 1 3.3807 -1.3420 -3.2802 34 1 5.7584 -1.9740 -3.3118 35 1 7.0521 -2.0170 -1.2191 36 1 5.9711 -1.4326 0.9125 37 1 -0.3503 -0.6260 2.3163 38 1 0.3029 0.3665 4.8786 39 1 -0.0315 1.7499 3.8097 40 1 -2.0073 -0.5869 4.0324 41 1 -2.0948 2.3726 3.0953 42 1 -3.0854 0.9774 2.4801 43 1 -5.7302 2.2517 1.7206 44 1 -2.5792 0.4234 6.1916 45 1 -1.7296 1.9728 5.7664 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032181199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:51 Heat of formation + Delta-G solvation = -17.025921 kcal Electronic energy + Delta-G solvation = -28292.271620 eV Core-core repulsion = 24277.816976 eV Total energy + Delta-G solvation = -4014.454644 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.78707 -39.77969 -38.20368 -37.86776 -37.39182 -34.79846 -33.19937 -32.15352 -30.99592 -29.41567 -29.05350 -27.63517 -25.76133 -24.86045 -23.94697 -23.00997 -22.27420 -21.27564 -20.60727 -19.23727 -19.06726 -18.11341 -17.37559 -16.79802 -16.44756 -16.00967 -15.91728 -15.22502 -15.17117 -14.94553 -14.87923 -14.48875 -14.25139 -14.09421 -13.88622 -13.55881 -13.34131 -13.01155 -12.77267 -12.59251 -12.40706 -12.15515 -12.12818 -11.62730 -11.48140 -11.40256 -11.25847 -11.08901 -10.76542 -10.75908 -10.64285 -10.09621 -9.86530 -9.79425 -9.54054 -9.00802 -8.92773 -8.81153 -8.34469 -6.94934 -5.83731 -3.15415 1.01332 1.02564 2.26196 2.37077 2.74856 3.34974 3.38277 3.40738 3.42452 3.47657 3.84118 4.28868 4.36835 4.38239 4.39979 4.63769 4.71808 4.93416 4.96577 5.07047 5.08490 5.12699 5.19590 5.27732 5.36012 5.45679 5.54298 5.61788 5.71533 5.83720 5.87027 5.92382 5.94050 6.11866 6.17788 6.24392 6.33515 6.40548 6.53135 6.61732 6.65079 7.12415 7.12670 7.27731 7.36339 7.48125 7.92300 8.03233 8.98764 9.64870 10.53115 11.33485 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025071 B = 0.002331 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.563782 B =12007.815934 C =12993.900179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.064 3.936 3 H 0.092 0.908 4 O -0.298 6.298 5 C 0.050 3.950 6 C -0.114 4.114 7 C -0.118 4.118 8 C -0.117 4.117 9 C -0.112 4.112 10 C 0.052 3.948 11 O -0.280 6.280 12 C 0.038 3.962 13 H 0.108 0.892 14 C 0.524 3.476 15 O -0.514 6.514 16 N -0.716 5.716 17 C 0.129 3.871 18 C -0.154 4.154 19 C 0.165 3.835 20 N -0.612 5.612 21 C -0.223 4.223 22 H 0.080 0.920 23 C -0.007 4.007 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.289 1.289 27 H -0.289 1.289 28 H -0.280 1.280 29 C 0.129 3.871 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.405 0.595 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.026 0.974 42 H 0.075 0.925 43 H 0.254 0.746 44 H 0.046 0.954 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.162 -9.520 -9.103 23.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.007 3.993 3 H 0.110 0.890 4 O -0.213 6.213 5 C 0.005 3.995 6 C -0.132 4.132 7 C -0.136 4.136 8 C -0.135 4.135 9 C -0.130 4.130 10 C 0.007 3.993 11 O -0.193 6.193 12 C -0.023 4.023 13 H 0.126 0.874 14 C 0.307 3.693 15 O -0.389 6.389 16 N -0.370 5.370 17 C 0.006 3.994 18 C -0.174 4.174 19 C 0.040 3.960 20 N -0.338 5.338 21 C -0.351 4.351 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.205 1.205 29 C 0.002 3.998 30 H 0.117 0.883 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.241 0.759 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.044 0.956 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 19.314 -8.947 -8.632 22.969 hybrid contribution -1.362 0.071 -0.074 1.366 sum 17.952 -8.876 -8.705 21.836 Atomic orbital electron populations 1.22119 0.89622 1.04401 1.05716 1.23049 0.97634 0.95758 0.82844 0.89004 1.86367 1.21323 1.73103 1.40529 1.18991 0.84486 1.02548 0.93518 1.20464 0.94751 1.02409 0.95599 1.20927 0.93168 1.00868 0.98657 1.20921 1.00188 1.00860 0.91540 1.20472 0.91819 1.01108 0.99628 1.19036 0.94009 1.02380 0.83876 1.86387 1.18621 1.84855 1.29474 1.23043 0.81589 1.01801 0.95866 0.87436 1.19524 0.83020 0.81440 0.85359 1.90755 1.54014 1.41896 1.52191 1.46172 1.08154 1.49481 1.33206 1.21575 0.94825 0.95790 0.87225 1.23833 0.90918 1.01286 1.01358 1.22390 0.87697 0.93429 0.92492 1.45943 1.04030 1.80816 1.02981 1.19032 0.82247 1.40970 0.92846 0.90261 1.24787 0.98198 1.02148 0.95244 1.69805 1.33805 1.55472 0.97751 0.86107 0.84807 0.77732 0.77156 1.21666 1.21566 1.20544 1.22488 0.88693 0.95509 0.93100 0.88283 0.89621 0.90710 0.84718 0.85064 0.85025 0.84648 0.75872 0.91452 0.90992 0.89035 0.95586 0.90722 0.93647 0.93535 0.94588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 8.22 37.16 0.31 -1.24 16 2 C 0.06 0.72 3.16 -26.49 -0.08 0.64 16 3 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 4 O -0.30 -3.57 10.07 -32.89 -0.33 -3.91 16 5 C 0.05 0.59 6.49 -39.14 -0.25 0.33 16 6 C -0.11 -1.09 9.96 -39.43 -0.39 -1.48 16 7 C -0.12 -0.93 10.04 -39.59 -0.40 -1.32 16 8 C -0.12 -0.94 10.04 -39.59 -0.40 -1.34 16 9 C -0.11 -1.15 9.96 -39.42 -0.39 -1.54 16 10 C 0.05 0.65 6.49 -39.14 -0.25 0.40 16 11 O -0.28 -3.94 9.63 -46.98 -0.45 -4.40 16 12 C 0.04 0.45 3.01 -27.64 -0.08 0.37 16 13 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 14 C 0.52 7.26 6.94 -10.99 -0.08 7.18 16 15 O -0.51 -9.21 16.55 -14.02 -0.23 -9.44 16 16 N -0.72 -8.75 4.14 -60.30 -0.25 -9.00 16 17 C 0.13 1.83 5.53 -4.04 -0.02 1.80 16 18 C -0.15 -2.53 3.94 -89.69 -0.35 -2.88 16 19 C 0.17 3.54 7.13 -2.98 -0.02 3.52 16 20 N -0.61 -15.03 3.70 -177.91 -0.66 -15.68 16 21 C -0.22 -6.11 10.70 -15.06 -0.16 -6.27 16 22 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 24 N -0.92 -26.33 11.36 55.49 0.63 -25.70 16 25 Si 0.91 21.66 29.56 -169.99 -5.02 16.63 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 C 0.13 2.46 8.50 -2.97 -0.03 2.43 16 30 H 0.10 1.02 6.02 -51.93 -0.31 0.71 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.60 8.02 -51.93 -0.42 0.19 16 33 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.40 4.09 6.66 -40.82 -0.27 3.82 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.10 7.83 -51.93 -0.41 0.69 16 40 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.03 0.58 7.89 -51.93 -0.41 0.17 16 42 H 0.07 1.75 7.07 -51.92 -0.37 1.38 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -33.63 370.79 -9.81 -43.44 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.38 Total: 2.17 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -2.71 Total: 0.30 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.28 Total: -50.38 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -1.02 Total: -17.74 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.63 -9.81 -43.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032181199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.417 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds