Wall clock time and date at job start Tue Mar 31 2020 17:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.70855 * 2 1 4 4 O 1.43180 * 109.74533 * 239.38937 * 2 1 3 5 5 C 1.36114 * 116.69442 * 194.04011 * 4 2 1 6 6 C 1.38698 * 119.39426 * 197.20172 * 5 4 2 7 7 C 1.38192 * 120.06688 * 180.19489 * 6 5 4 8 8 C 1.38254 * 120.11564 * 359.97438 * 7 6 5 9 9 C 1.38196 * 120.10919 * 359.95456 * 8 7 6 10 10 C 1.38703 * 120.06612 * 0.02571 * 9 8 7 11 11 O 1.36109 * 119.39580 * 180.19672 * 10 9 8 12 12 C 1.43174 * 116.71848 * 197.04753 * 11 10 9 13 13 H 1.08998 * 109.71142 * 73.56701 * 12 11 10 14 14 C 1.50701 * 109.71189 * 194.14994 * 12 11 10 15 15 O 1.21286 * 119.99448 * 9.40448 * 14 12 11 16 16 N 1.34768 * 120.00215 * 189.41108 * 14 12 11 17 17 C 1.46501 * 119.99923 * 184.78500 * 16 14 12 18 18 C 1.53000 * 109.47100 * 179.97438 * 17 16 14 19 19 C 1.53944 * 113.74213 * 271.67043 * 18 17 16 20 20 N 1.47574 * 86.12006 * 222.04615 * 19 18 17 21 21 C 1.36939 * 134.49634 * 204.64318 * 20 19 18 22 22 H 1.07997 * 120.00281 * 184.66750 * 21 20 19 23 23 C 1.38815 * 120.00041 * 4.65799 * 21 20 19 24 24 N 1.31621 * 119.99755 * 354.54889 * 23 21 20 25 25 Si 1.86796 * 120.00086 * 174.54182 * 23 21 20 26 26 H 1.48504 * 109.46880 * 95.00317 * 25 23 21 27 27 H 1.48501 * 109.47118 * 214.99955 * 25 23 21 28 28 H 1.48495 * 109.47344 * 335.00170 * 25 23 21 29 29 C 1.47580 * 91.01650 * 24.64047 * 20 19 18 30 30 H 1.08996 * 109.47079 * 305.90343 * 1 2 3 31 31 H 1.09003 * 109.46935 * 65.89718 * 1 2 3 32 32 H 1.08992 * 109.47081 * 185.90020 * 1 2 3 33 33 H 1.08005 * 119.97101 * 0.18715 * 6 5 4 34 34 H 1.08005 * 119.94570 * 180.02562 * 7 6 5 35 35 H 1.07993 * 119.94785 * 180.23129 * 8 7 6 36 36 H 1.08002 * 119.96827 * 180.02562 * 9 8 7 37 37 H 0.96998 * 120.00080 * 4.78048 * 16 14 12 38 38 H 1.09003 * 109.47209 * 299.99706 * 17 16 14 39 39 H 1.08995 * 109.47492 * 59.99693 * 17 16 14 40 40 H 1.09002 * 112.94608 * 43.40381 * 18 17 16 41 41 H 1.09000 * 113.77144 * 336.35324 * 19 18 17 42 42 H 1.09008 * 113.76956 * 107.74687 * 19 18 17 43 43 H 0.96995 * 120.00017 * 179.97438 * 24 23 21 44 44 H 1.08997 * 113.77368 * 221.05617 * 29 20 19 45 45 H 1.09003 * 113.87131 * 89.66612 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 8 2.0137 -0.6862 -1.1598 5 6 3.3307 -1.0302 -1.1619 6 6 3.9459 -1.3615 -2.3600 7 6 5.2812 -1.7168 -2.3776 8 6 6.0078 -1.7425 -1.2017 9 6 5.4012 -1.4121 -0.0047 10 6 4.0614 -1.0543 0.0199 11 8 3.4789 -0.7275 1.2058 12 6 2.0476 -0.7352 1.2437 13 1 1.6853 -1.7632 1.2411 14 6 1.5683 -0.0307 2.4867 15 8 2.3547 0.5810 3.1784 16 7 0.2659 -0.0805 2.8297 17 6 -0.2191 0.6894 3.9778 18 6 -1.7220 0.4588 4.1483 19 6 -2.5947 1.4352 3.3391 20 7 -3.4480 1.5110 4.5408 21 6 -4.7640 1.8153 4.7657 22 1 -5.1400 1.8723 5.7765 23 6 -5.6149 2.0507 3.6945 24 7 -5.1356 2.0876 2.4692 25 14 -7.4400 2.3150 3.9919 26 1 -7.7218 3.7705 4.0779 27 1 -8.2147 1.7263 2.8700 28 1 -7.8344 1.6584 5.2641 29 6 -2.3133 1.1271 5.4028 30 1 -0.3633 0.6026 0.8324 31 1 -0.3633 0.4197 -0.9381 32 1 -0.3633 -1.0221 0.1056 33 1 3.3807 -1.3420 -3.2802 34 1 5.7584 -1.9740 -3.3118 35 1 7.0521 -2.0170 -1.2191 36 1 5.9711 -1.4326 0.9125 37 1 -0.3503 -0.6260 2.3163 38 1 0.3029 0.3665 4.8786 39 1 -0.0315 1.7499 3.8097 40 1 -2.0073 -0.5869 4.0324 41 1 -2.0948 2.3726 3.0953 42 1 -3.0854 0.9774 2.4801 43 1 -5.7302 2.2517 1.7206 44 1 -2.5792 0.4234 6.1916 45 1 -1.7296 1.9728 5.7664 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032181199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:50 Heat of formation + Delta-G solvation = -37.610526 kcal Electronic energy + Delta-G solvation = -28293.164235 eV Core-core repulsion = 24277.816976 eV Total energy + Delta-G solvation = -4015.347259 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.67452 -40.89948 -39.68424 -38.70586 -38.33609 -36.04619 -34.44205 -33.78037 -31.75202 -30.66524 -30.08382 -28.79679 -27.28005 -26.50942 -24.81627 -23.92067 -23.69258 -22.30868 -21.65574 -20.63328 -20.00085 -19.09711 -18.72628 -18.24382 -17.38370 -17.06375 -17.04398 -16.83996 -16.13898 -16.10331 -15.73402 -15.67756 -15.47926 -15.29783 -14.90516 -14.84055 -14.51666 -14.24345 -14.01877 -13.59404 -13.39337 -13.29452 -13.08136 -12.93280 -12.88478 -12.81742 -12.51538 -12.36711 -12.26911 -12.07085 -11.84290 -11.64740 -11.56688 -11.27130 -11.00343 -10.79777 -10.17945 -9.67558 -9.14540 -8.90047 -7.90342 -5.22358 0.27845 0.28596 1.20355 1.36501 1.47112 1.47460 1.56902 1.90475 2.44608 2.48515 2.72275 2.94879 3.30367 3.34230 3.43259 3.48825 3.51143 3.74912 3.79941 4.04415 4.06337 4.12184 4.26592 4.34853 4.41090 4.47333 4.57781 4.59776 4.69084 4.78283 4.82809 4.88168 4.88950 5.07609 5.09330 5.17158 5.21529 5.24293 5.30303 5.50472 5.56932 5.66678 5.68634 5.79935 5.97029 6.27943 6.33582 6.94609 6.95554 7.62185 8.57796 9.26346 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025071 B = 0.002331 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.563782 B =12007.815934 C =12993.900179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.069 3.931 3 H 0.076 0.924 4 O -0.305 6.305 5 C 0.025 3.975 6 C -0.120 4.120 7 C -0.109 4.109 8 C -0.109 4.109 9 C -0.125 4.125 10 C 0.023 3.977 11 O -0.306 6.306 12 C 0.041 3.959 13 H 0.130 0.870 14 C 0.529 3.471 15 O -0.558 6.558 16 N -0.702 5.702 17 C 0.140 3.860 18 C -0.115 4.115 19 C 0.163 3.837 20 N -0.645 5.645 21 C -0.235 4.235 22 H 0.080 0.920 23 C -0.065 4.065 24 N -0.949 5.949 25 Si 0.975 3.025 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.269 1.269 29 C 0.125 3.875 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.149 0.851 34 H 0.166 0.834 35 H 0.164 0.836 36 H 0.140 0.860 37 H 0.417 0.583 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.107 0.893 41 H 0.013 0.987 42 H 0.051 0.949 43 H 0.249 0.751 44 H 0.061 0.939 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.179 -11.126 -9.710 25.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.012 3.988 3 H 0.094 0.906 4 O -0.220 6.220 5 C -0.020 4.020 6 C -0.139 4.139 7 C -0.127 4.127 8 C -0.127 4.127 9 C -0.143 4.143 10 C -0.021 4.021 11 O -0.221 6.221 12 C -0.019 4.019 13 H 0.147 0.853 14 C 0.313 3.687 15 O -0.436 6.436 16 N -0.356 5.356 17 C 0.016 3.984 18 C -0.134 4.134 19 C 0.038 3.962 20 N -0.372 5.372 21 C -0.364 4.364 22 H 0.098 0.902 23 C -0.258 4.258 24 N -0.598 5.598 25 Si 0.804 3.196 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.193 1.193 29 C 0.000 4.000 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.167 0.833 34 H 0.184 0.816 35 H 0.182 0.818 36 H 0.158 0.842 37 H 0.256 0.744 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.126 0.874 41 H 0.031 0.969 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.080 0.920 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 20.335 -10.581 -9.232 24.713 hybrid contribution -1.551 0.568 0.091 1.655 sum 18.784 -10.013 -9.142 23.166 Atomic orbital electron populations 1.22098 0.88433 1.05443 1.05463 1.22976 0.98378 0.94857 0.82638 0.90594 1.86344 1.21824 1.73297 1.40512 1.19315 0.84496 1.03882 0.94269 1.20813 0.95743 1.01978 0.95317 1.21380 0.92371 0.98921 1.00021 1.21342 1.01622 0.99108 0.90620 1.20767 0.91230 1.01349 1.00979 1.19373 0.94999 1.04199 0.83578 1.86325 1.19383 1.85570 1.30787 1.23061 0.81312 1.02653 0.94873 0.85278 1.19801 0.82798 0.80652 0.85433 1.90732 1.55188 1.43915 1.53740 1.45993 1.08014 1.48976 1.32659 1.21327 0.93151 0.95534 0.88357 1.23413 0.91456 1.00610 0.97939 1.22327 0.88155 0.94052 0.91697 1.46376 1.04459 1.80885 1.05470 1.19395 0.84051 1.39964 0.92962 0.90183 1.25575 1.02132 1.02870 0.95211 1.69972 1.34739 1.56842 0.98255 0.85115 0.80041 0.77279 0.77205 1.21834 1.21840 1.19328 1.22701 0.87097 0.96239 0.94008 0.89154 0.89402 0.88813 0.83321 0.81613 0.81808 0.84243 0.74365 0.90257 0.92093 0.87442 0.96873 0.93096 0.94231 0.92035 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 8.22 71.98 0.59 -2.36 16 2 C 0.07 1.56 3.16 30.75 0.10 1.66 16 3 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 4 O -0.30 -7.25 10.07 -82.63 -0.83 -8.08 16 5 C 0.03 0.58 6.49 22.55 0.15 0.73 16 6 C -0.12 -2.09 9.96 22.37 0.22 -1.87 16 7 C -0.11 -1.38 10.04 22.26 0.22 -1.16 16 8 C -0.11 -1.47 10.04 22.26 0.22 -1.24 16 9 C -0.12 -2.45 9.96 22.37 0.22 -2.23 16 10 C 0.02 0.57 6.49 22.56 0.15 0.72 16 11 O -0.31 -8.82 9.63 -69.07 -0.67 -9.49 16 12 C 0.04 0.99 3.01 30.01 0.09 1.08 16 13 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 14 C 0.53 14.60 6.94 87.66 0.61 15.21 16 15 O -0.56 -20.29 16.55 15.66 0.26 -20.03 16 16 N -0.70 -16.51 4.14 -463.07 -1.92 -18.42 16 17 C 0.14 3.80 5.53 86.38 0.48 4.28 16 18 C -0.11 -3.61 3.94 -10.13 -0.04 -3.65 16 19 C 0.16 7.05 7.13 86.48 0.62 7.66 16 20 N -0.65 -31.67 3.70 -716.77 -2.65 -34.32 16 21 C -0.24 -12.91 10.70 84.03 0.90 -12.01 16 22 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 23 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 24 N -0.95 -55.25 11.36 21.65 0.25 -55.01 16 25 Si 0.98 44.81 29.56 68.60 2.03 46.84 16 26 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 27 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 29 C 0.12 4.61 8.50 86.48 0.74 5.34 16 30 H 0.09 1.85 6.02 -2.39 -0.01 1.84 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.38 8.02 -2.39 -0.02 1.36 16 33 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 34 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 35 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 36 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.42 7.83 6.66 -92.71 -0.62 7.21 16 38 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.06 1.84 7.83 -2.39 -0.02 1.82 16 40 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 41 H 0.01 0.61 7.89 -2.39 -0.02 0.59 16 42 H 0.05 2.44 7.07 -2.38 -0.02 2.42 16 43 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 44 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 Total: -1.00 -74.30 370.79 2.59 -71.71 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.39 Total: 17.76 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 5.73 Total: 9.03 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -4.32 Total: -107.75 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -1.24 Total: -37.59 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -74.30 2.59 -71.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032181199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.103 kcal (2) G-P(sol) polarization free energy of solvation -74.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds