Wall clock time and date at job start Tue Mar 31 2020 17:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.74195 * 2 1 4 4 O 1.43172 * 109.71249 * 120.61930 * 2 1 3 5 5 C 1.36111 * 116.69597 * 165.97168 * 4 2 1 6 6 C 1.38696 * 119.39129 * 162.89155 * 5 4 2 7 7 C 1.38200 * 120.06083 * 180.08786 * 6 5 4 8 8 C 1.38251 * 120.10940 * 359.49586 * 7 6 5 9 9 C 1.38190 * 120.12043 * 0.33701 * 8 7 6 10 10 C 1.38706 * 120.06316 * 359.97279 * 9 8 7 11 11 O 1.36108 * 119.40383 * 179.64952 * 10 9 8 12 12 C 1.43168 * 116.71869 * 162.99081 * 11 10 9 13 13 H 1.08994 * 109.74908 * 286.45519 * 12 11 10 14 14 C 1.50704 * 109.70233 * 165.85103 * 12 11 10 15 15 O 1.21272 * 120.00589 * 331.95371 * 14 12 11 16 16 N 1.34783 * 119.99761 * 151.94129 * 14 12 11 17 17 C 1.46500 * 119.99771 * 4.26296 * 16 14 12 18 18 C 1.46494 * 119.99887 * 184.25112 * 16 14 12 19 19 C 1.53950 * 113.74266 * 216.68153 * 18 16 14 20 20 N 1.47584 * 86.11898 * 222.05021 * 19 18 16 21 21 C 1.36930 * 134.49152 * 204.64114 * 20 19 18 22 22 H 1.08004 * 119.99867 * 183.99264 * 21 20 19 23 23 C 1.38805 * 120.00301 * 3.99554 * 21 20 19 24 24 N 1.31619 * 120.00285 * 6.19475 * 23 21 20 25 25 Si 1.86805 * 120.00054 * 186.19145 * 23 21 20 26 26 H 1.48502 * 109.46995 * 94.96960 * 25 23 21 27 27 H 1.48501 * 109.47123 * 214.96975 * 25 23 21 28 28 H 1.48494 * 109.47101 * 334.96987 * 25 23 21 29 29 C 1.47584 * 91.01144 * 24.63934 * 20 19 18 30 30 H 1.09002 * 109.46637 * 297.81501 * 1 2 3 31 31 H 1.08994 * 109.46917 * 57.81589 * 1 2 3 32 32 H 1.08992 * 109.47202 * 177.81791 * 1 2 3 33 33 H 1.07993 * 119.97505 * 359.85620 * 6 5 4 34 34 H 1.08000 * 119.94577 * 179.77119 * 7 6 5 35 35 H 1.08002 * 119.94015 * 180.31618 * 8 7 6 36 36 H 1.07993 * 119.97152 * 179.97438 * 9 8 7 37 37 H 1.08998 * 109.47755 * 95.10668 * 17 16 14 38 38 H 1.09006 * 109.46458 * 215.10630 * 17 16 14 39 39 H 1.09000 * 109.47222 * 335.10313 * 17 16 14 40 40 H 1.09000 * 112.94799 * 348.41231 * 18 16 14 41 41 H 1.09001 * 113.76944 * 336.34944 * 19 18 16 42 42 H 1.08997 * 113.77526 * 107.74818 * 19 18 16 43 43 H 0.96996 * 120.00685 * 180.02562 * 24 23 21 44 44 H 1.09000 * 113.76802 * 221.05944 * 29 20 19 45 45 H 1.08992 * 113.77234 * 89.66575 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 8 2.0130 -0.6865 1.1599 5 6 3.3299 -1.0307 1.1627 6 6 3.9437 -1.3642 2.3609 7 6 5.2805 -1.7140 2.3800 8 6 6.0068 -1.7426 1.2040 9 6 5.4004 -1.4148 0.0063 10 6 4.0607 -1.0566 -0.0191 11 8 3.4788 -0.7293 -1.2052 12 6 2.0476 -0.7357 -1.2435 13 1 1.6838 -1.7632 -1.2407 14 6 1.5695 -0.0308 -2.4867 15 8 2.2474 0.8407 -2.9884 16 7 0.3885 -0.3690 -3.0412 17 6 -0.4733 -1.3550 -2.3845 18 6 -0.0334 0.2496 -4.3003 19 6 -1.5460 0.5252 -4.3792 20 7 -1.4619 0.0317 -5.7675 21 6 -2.2023 0.2284 -6.9025 22 1 -1.9617 -0.3139 -7.8049 23 6 -3.2620 1.1248 -6.8931 24 7 -3.4804 1.8748 -5.8338 25 14 -4.3784 1.2669 -8.3841 26 1 -5.5703 0.4017 -8.1943 27 1 -4.8117 2.6781 -8.5454 28 1 -3.6406 0.8338 -9.5979 29 6 -0.2592 -0.7590 -5.4412 30 1 -0.3633 0.4795 0.9090 31 1 -0.3633 0.5474 -0.8697 32 1 -0.3633 -1.0268 -0.0391 33 1 3.3775 -1.3469 3.2803 34 1 5.7576 -1.9698 3.3145 35 1 7.0501 -2.0214 1.2214 36 1 5.9701 -1.4375 -0.9109 37 1 -1.2088 -0.8404 -1.7662 38 1 -0.9864 -1.9497 -3.1404 39 1 0.1340 -2.0088 -1.7585 40 1 0.5849 1.1014 -4.5835 41 1 -2.1429 -0.1084 -3.7231 42 1 -1.8048 1.5813 -4.3033 43 1 -4.2211 2.5009 -5.8270 44 1 0.5096 -0.7282 -6.2133 45 1 -0.4779 -1.7698 -5.0972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044284396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:56 Heat of formation + Delta-G solvation = 2.872113 kcal Electronic energy + Delta-G solvation = -29043.828422 eV Core-core repulsion = 25030.236622 eV Total energy + Delta-G solvation = -4013.591800 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.79490 -39.95935 -38.14118 -37.74344 -37.17514 -34.98975 -33.02785 -31.92235 -30.94241 -29.37798 -28.19138 -27.64866 -26.55022 -24.91185 -24.06047 -23.36090 -22.88985 -21.40348 -19.87802 -19.07988 -18.63171 -18.20468 -17.13629 -16.95938 -16.47507 -16.09053 -15.92385 -15.12680 -15.10897 -14.89787 -14.81254 -14.47105 -14.07859 -13.98410 -13.86407 -13.36057 -13.25620 -12.89297 -12.69792 -12.45218 -12.22630 -12.08617 -12.04842 -11.85847 -11.64901 -11.55547 -11.46845 -11.10110 -10.92380 -10.77302 -10.61382 -10.32706 -10.11443 -9.67440 -9.61778 -8.89964 -8.89314 -8.34848 -8.29357 -6.98627 -5.85431 -3.19956 1.04240 1.06017 2.21801 2.60239 2.80049 3.34110 3.37529 3.41281 3.42500 3.49780 3.90230 4.22486 4.33829 4.37973 4.41153 4.62438 4.74235 4.90352 4.99001 5.07174 5.10657 5.15076 5.15570 5.28966 5.35515 5.41243 5.46136 5.59822 5.62950 5.67574 5.82756 5.88880 5.94518 5.97940 6.02344 6.20578 6.32805 6.37135 6.47144 6.58029 6.67654 7.08222 7.16188 7.22818 7.41890 7.52550 7.89217 8.15825 8.94694 9.61220 10.46546 11.30311 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.034345 B = 0.002492 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.072458 B =11234.233587 C =11670.221217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.066 3.934 3 H 0.093 0.907 4 O -0.300 6.300 5 C 0.049 3.951 6 C -0.114 4.114 7 C -0.119 4.119 8 C -0.116 4.116 9 C -0.112 4.112 10 C 0.055 3.945 11 O -0.282 6.282 12 C 0.036 3.964 13 H 0.107 0.893 14 C 0.524 3.476 15 O -0.515 6.515 16 N -0.590 5.590 17 C 0.061 3.939 18 C 0.092 3.908 19 C 0.150 3.850 20 N -0.604 5.604 21 C -0.224 4.224 22 H 0.082 0.918 23 C -0.006 4.006 24 N -0.918 5.918 25 Si 0.915 3.085 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.279 1.279 29 C 0.108 3.892 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.118 0.882 41 H 0.031 0.969 42 H 0.086 0.914 43 H 0.255 0.745 44 H 0.048 0.952 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.144 -8.774 18.318 24.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.009 3.991 3 H 0.111 0.889 4 O -0.215 6.215 5 C 0.004 3.996 6 C -0.132 4.132 7 C -0.137 4.137 8 C -0.135 4.135 9 C -0.131 4.131 10 C 0.009 3.991 11 O -0.195 6.195 12 C -0.024 4.024 13 H 0.124 0.876 14 C 0.308 3.692 15 O -0.390 6.390 16 N -0.324 5.324 17 C -0.082 4.082 18 C -0.011 4.011 19 C 0.024 3.976 20 N -0.330 5.330 21 C -0.351 4.351 22 H 0.100 0.900 23 C -0.203 4.203 24 N -0.564 5.564 25 Si 0.745 3.255 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.205 1.205 29 C -0.019 4.019 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.048 0.952 42 H 0.104 0.896 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.177 -8.117 17.772 23.566 hybrid contribution -0.835 -0.082 -0.799 1.158 sum 12.342 -8.200 16.973 22.531 Atomic orbital electron populations 1.22297 0.90076 1.04389 1.04785 1.23039 0.97388 0.95855 0.82799 0.88935 1.86334 1.21415 1.73145 1.40620 1.18976 0.84470 1.02651 0.93514 1.20440 0.94737 1.02541 0.95521 1.20915 0.93142 1.01058 0.98631 1.20916 1.00192 1.00823 0.91525 1.20478 0.91827 1.01142 0.99636 1.19049 0.94007 1.02075 0.83952 1.86383 1.18903 1.84754 1.29485 1.23191 0.81210 1.01816 0.96198 0.87557 1.19529 0.81983 0.83500 0.84148 1.90736 1.55079 1.30649 1.62552 1.48018 1.17983 1.42026 1.24388 1.22317 0.95093 0.92056 0.98740 1.24213 0.98951 0.97300 0.80644 1.22744 0.88258 1.01147 0.85465 1.45576 1.29545 1.52002 1.05905 1.18991 1.08355 1.19743 0.88048 0.89999 1.24804 0.99347 0.98199 0.97943 1.69806 1.31732 1.26124 1.28779 0.86061 0.80694 0.77102 0.81677 1.21574 1.21590 1.20461 1.22992 0.90243 0.94400 0.94263 0.90193 0.88735 0.90286 0.84794 0.85101 0.85040 0.84640 0.90998 0.90043 0.91421 0.86365 0.95164 0.89609 0.93496 0.93334 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 7.55 37.16 0.28 -1.24 16 2 C 0.07 0.79 3.16 -26.48 -0.08 0.71 16 3 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 4 O -0.30 -3.65 10.07 -32.89 -0.33 -3.98 16 5 C 0.05 0.59 6.49 -39.14 -0.25 0.34 16 6 C -0.11 -1.10 9.96 -39.43 -0.39 -1.49 16 7 C -0.12 -0.96 10.04 -39.59 -0.40 -1.36 16 8 C -0.12 -0.98 10.04 -39.59 -0.40 -1.38 16 9 C -0.11 -1.21 9.96 -39.43 -0.39 -1.61 16 10 C 0.05 0.71 6.49 -39.14 -0.25 0.46 16 11 O -0.28 -4.26 9.76 -46.17 -0.45 -4.71 16 12 C 0.04 0.48 2.55 -27.63 -0.07 0.41 16 13 H 0.11 1.20 6.00 -51.93 -0.31 0.89 16 14 C 0.52 8.45 6.21 -10.98 -0.07 8.38 16 15 O -0.52 -10.44 16.21 -12.36 -0.20 -10.64 16 16 N -0.59 -9.00 2.70 -175.73 -0.48 -9.47 16 17 C 0.06 0.69 6.85 59.85 0.41 1.10 16 18 C 0.09 1.75 4.41 -70.13 -0.31 1.44 16 19 C 0.15 3.33 7.17 -2.97 -0.02 3.31 16 20 N -0.60 -15.04 3.69 -178.06 -0.66 -15.70 16 21 C -0.22 -6.15 10.69 -15.07 -0.16 -6.31 16 22 H 0.08 2.18 7.84 -52.48 -0.41 1.77 16 23 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 24 N -0.92 -26.47 11.30 55.49 0.63 -25.84 16 25 Si 0.91 21.73 29.56 -169.99 -5.02 16.70 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 C 0.11 2.18 8.48 -2.97 -0.03 2.15 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.01 5.80 -51.93 -0.30 0.71 16 32 H 0.08 0.63 6.25 -51.93 -0.32 0.31 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.07 0.74 5.75 -51.93 -0.30 0.44 16 38 H 0.08 0.99 6.59 -51.93 -0.34 0.65 16 39 H 0.07 0.60 4.97 -51.93 -0.26 0.34 16 40 H 0.12 2.51 7.22 -51.93 -0.38 2.14 16 41 H 0.03 0.64 6.78 -51.93 -0.35 0.29 16 42 H 0.09 2.17 6.88 -51.93 -0.36 1.81 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.04 0.68 6.91 -51.93 -0.36 0.32 16 LS Contribution 356.14 15.07 5.37 5.37 Total: -1.00 -33.33 356.14 -9.16 -42.50 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.78 Total: 1.12 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -2.23 Total: 4.66 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.51 Total: -51.01 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.98 Total: -19.33 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.33 -9.16 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044284396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.368 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds