Wall clock time and date at job start Tue Mar 31 2020 17:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.74195 * 2 1 4 4 O 1.43172 * 109.71249 * 120.61930 * 2 1 3 5 5 C 1.36111 * 116.69597 * 165.97168 * 4 2 1 6 6 C 1.38696 * 119.39129 * 162.89155 * 5 4 2 7 7 C 1.38200 * 120.06083 * 180.08786 * 6 5 4 8 8 C 1.38251 * 120.10940 * 359.49586 * 7 6 5 9 9 C 1.38190 * 120.12043 * 0.33701 * 8 7 6 10 10 C 1.38706 * 120.06316 * 359.97279 * 9 8 7 11 11 O 1.36108 * 119.40383 * 179.64952 * 10 9 8 12 12 C 1.43168 * 116.71869 * 162.99081 * 11 10 9 13 13 H 1.08994 * 109.74908 * 286.45519 * 12 11 10 14 14 C 1.50704 * 109.70233 * 165.85103 * 12 11 10 15 15 O 1.21272 * 120.00589 * 331.95371 * 14 12 11 16 16 N 1.34783 * 119.99761 * 151.94129 * 14 12 11 17 17 C 1.46500 * 119.99771 * 4.26296 * 16 14 12 18 18 C 1.46494 * 119.99887 * 184.25112 * 16 14 12 19 19 C 1.53950 * 113.74266 * 216.68153 * 18 16 14 20 20 N 1.47584 * 86.11898 * 222.05021 * 19 18 16 21 21 C 1.36930 * 134.49152 * 204.64114 * 20 19 18 22 22 H 1.08004 * 119.99867 * 183.99264 * 21 20 19 23 23 C 1.38805 * 120.00301 * 3.99554 * 21 20 19 24 24 N 1.31619 * 120.00285 * 6.19475 * 23 21 20 25 25 Si 1.86805 * 120.00054 * 186.19145 * 23 21 20 26 26 H 1.48502 * 109.46995 * 94.96960 * 25 23 21 27 27 H 1.48501 * 109.47123 * 214.96975 * 25 23 21 28 28 H 1.48494 * 109.47101 * 334.96987 * 25 23 21 29 29 C 1.47584 * 91.01144 * 24.63934 * 20 19 18 30 30 H 1.09002 * 109.46637 * 297.81501 * 1 2 3 31 31 H 1.08994 * 109.46917 * 57.81589 * 1 2 3 32 32 H 1.08992 * 109.47202 * 177.81791 * 1 2 3 33 33 H 1.07993 * 119.97505 * 359.85620 * 6 5 4 34 34 H 1.08000 * 119.94577 * 179.77119 * 7 6 5 35 35 H 1.08002 * 119.94015 * 180.31618 * 8 7 6 36 36 H 1.07993 * 119.97152 * 179.97438 * 9 8 7 37 37 H 1.08998 * 109.47755 * 95.10668 * 17 16 14 38 38 H 1.09006 * 109.46458 * 215.10630 * 17 16 14 39 39 H 1.09000 * 109.47222 * 335.10313 * 17 16 14 40 40 H 1.09000 * 112.94799 * 348.41231 * 18 16 14 41 41 H 1.09001 * 113.76944 * 336.34944 * 19 18 16 42 42 H 1.08997 * 113.77526 * 107.74818 * 19 18 16 43 43 H 0.96996 * 120.00685 * 180.02562 * 24 23 21 44 44 H 1.09000 * 113.76802 * 221.05944 * 29 20 19 45 45 H 1.08992 * 113.77234 * 89.66575 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 8 2.0130 -0.6865 1.1599 5 6 3.3299 -1.0307 1.1627 6 6 3.9437 -1.3642 2.3609 7 6 5.2805 -1.7140 2.3800 8 6 6.0068 -1.7426 1.2040 9 6 5.4004 -1.4148 0.0063 10 6 4.0607 -1.0566 -0.0191 11 8 3.4788 -0.7293 -1.2052 12 6 2.0476 -0.7357 -1.2435 13 1 1.6838 -1.7632 -1.2407 14 6 1.5695 -0.0308 -2.4867 15 8 2.2474 0.8407 -2.9884 16 7 0.3885 -0.3690 -3.0412 17 6 -0.4733 -1.3550 -2.3845 18 6 -0.0334 0.2496 -4.3003 19 6 -1.5460 0.5252 -4.3792 20 7 -1.4619 0.0317 -5.7675 21 6 -2.2023 0.2284 -6.9025 22 1 -1.9617 -0.3139 -7.8049 23 6 -3.2620 1.1248 -6.8931 24 7 -3.4804 1.8748 -5.8338 25 14 -4.3784 1.2669 -8.3841 26 1 -5.5703 0.4017 -8.1943 27 1 -4.8117 2.6781 -8.5454 28 1 -3.6406 0.8338 -9.5979 29 6 -0.2592 -0.7590 -5.4412 30 1 -0.3633 0.4795 0.9090 31 1 -0.3633 0.5474 -0.8697 32 1 -0.3633 -1.0268 -0.0391 33 1 3.3775 -1.3469 3.2803 34 1 5.7576 -1.9698 3.3145 35 1 7.0501 -2.0214 1.2214 36 1 5.9701 -1.4375 -0.9109 37 1 -1.2088 -0.8404 -1.7662 38 1 -0.9864 -1.9497 -3.1404 39 1 0.1340 -2.0088 -1.7585 40 1 0.5849 1.1014 -4.5835 41 1 -2.1429 -0.1084 -3.7231 42 1 -1.8048 1.5813 -4.3033 43 1 -4.2211 2.5009 -5.8270 44 1 0.5096 -0.7282 -6.2133 45 1 -0.4779 -1.7698 -5.0972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044284396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:55 Heat of formation + Delta-G solvation = -17.684275 kcal Electronic energy + Delta-G solvation = -29044.719814 eV Core-core repulsion = 25030.236622 eV Total energy + Delta-G solvation = -4014.483192 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.76535 -41.24445 -39.49591 -38.68681 -38.27508 -36.34621 -34.39439 -33.53533 -31.72949 -30.19068 -29.76608 -28.82667 -27.81224 -26.64745 -25.28150 -24.65974 -23.70077 -22.58919 -21.17699 -20.13181 -19.92674 -19.27471 -18.78738 -18.11592 -17.73547 -17.19003 -17.05553 -16.82002 -16.12758 -16.01596 -15.76793 -15.65743 -15.48131 -15.13430 -14.86091 -14.64833 -14.35433 -14.21467 -13.69471 -13.56412 -13.38710 -13.34284 -13.26934 -13.08773 -12.86664 -12.83233 -12.77879 -12.57749 -12.36312 -12.07286 -12.00171 -11.91891 -11.58320 -11.52354 -10.95469 -10.90716 -9.72650 -9.66580 -9.13871 -8.96865 -7.93467 -5.29247 0.28341 0.29106 1.04077 1.39140 1.46820 1.48149 1.56794 1.90260 2.31082 2.48115 2.72632 2.93832 3.10382 3.24690 3.39733 3.41501 3.51006 3.73856 3.79840 3.98180 4.12110 4.16765 4.26416 4.27524 4.35131 4.41835 4.46681 4.53441 4.62917 4.69625 4.70178 4.79622 4.86130 4.88737 5.07362 5.10204 5.17643 5.20194 5.22503 5.46580 5.51018 5.57815 5.69713 5.80756 5.89710 6.19166 6.30649 6.86033 6.87704 7.55710 8.48060 9.21785 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.034345 B = 0.002492 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.072458 B =11234.233587 C =11670.221217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.071 3.929 3 H 0.072 0.928 4 O -0.300 6.300 5 C 0.026 3.974 6 C -0.117 4.117 7 C -0.109 4.109 8 C -0.109 4.109 9 C -0.127 4.127 10 C 0.022 3.978 11 O -0.312 6.312 12 C 0.044 3.956 13 H 0.131 0.869 14 C 0.525 3.475 15 O -0.566 6.566 16 N -0.583 5.583 17 C 0.052 3.948 18 C 0.115 3.885 19 C 0.156 3.844 20 N -0.635 5.635 21 C -0.235 4.235 22 H 0.085 0.915 23 C -0.063 4.063 24 N -0.949 5.949 25 Si 0.980 3.020 26 H -0.284 1.284 27 H -0.295 1.295 28 H -0.269 1.269 29 C 0.114 3.886 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.153 0.847 34 H 0.168 0.832 35 H 0.164 0.836 36 H 0.137 0.863 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.250 0.750 44 H 0.047 0.953 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.823 -11.140 20.358 27.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.013 3.987 3 H 0.090 0.910 4 O -0.215 6.215 5 C -0.019 4.019 6 C -0.135 4.135 7 C -0.127 4.127 8 C -0.127 4.127 9 C -0.145 4.145 10 C -0.022 4.022 11 O -0.226 6.226 12 C -0.016 4.016 13 H 0.148 0.852 14 C 0.311 3.689 15 O -0.444 6.444 16 N -0.316 5.316 17 C -0.089 4.089 18 C 0.010 3.990 19 C 0.030 3.970 20 N -0.362 5.362 21 C -0.364 4.364 22 H 0.102 0.898 23 C -0.257 4.257 24 N -0.597 5.597 25 Si 0.808 3.192 26 H -0.211 1.211 27 H -0.222 1.222 28 H -0.193 1.193 29 C -0.012 4.012 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.170 0.830 34 H 0.185 0.815 35 H 0.181 0.819 36 H 0.155 0.845 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.872 -10.537 19.844 26.405 hybrid contribution -0.878 0.606 -1.319 1.697 sum 12.993 -9.931 18.524 24.710 Atomic orbital electron populations 1.22301 0.88202 1.05762 1.04833 1.22976 0.98666 0.94653 0.82384 0.91008 1.86323 1.21760 1.73220 1.40229 1.19301 0.84537 1.03895 0.94161 1.20815 0.95657 1.01787 0.95261 1.21390 0.92402 0.98927 0.99940 1.21334 1.01620 0.99099 0.90614 1.20758 0.91255 1.01554 1.00977 1.19398 0.95029 1.04162 0.83605 1.86312 1.19562 1.85620 1.31145 1.23150 0.81119 1.02569 0.94771 0.85154 1.20026 0.81434 0.82772 0.84621 1.90709 1.56557 1.32924 1.64228 1.47880 1.18343 1.42193 1.23149 1.22650 0.95450 0.91659 0.99131 1.23448 0.96564 0.96495 0.82450 1.22614 0.90318 0.99150 0.84888 1.45873 1.30763 1.53329 1.06260 1.19345 1.08492 1.19343 0.89176 0.89765 1.25630 1.00968 0.98288 1.00769 1.69989 1.32149 1.26911 1.30637 0.85035 0.78765 0.76516 0.78853 1.21110 1.22176 1.19324 1.23102 0.88448 0.95307 0.94303 0.88902 0.90067 0.88044 0.82970 0.81472 0.81889 0.84541 0.89393 0.90082 0.88151 0.89106 0.93457 0.93357 0.94060 0.93430 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 7.55 71.98 0.54 -2.17 16 2 C 0.07 1.65 3.16 30.76 0.10 1.75 16 3 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 4 O -0.30 -6.93 10.07 -82.58 -0.83 -7.76 16 5 C 0.03 0.59 6.49 22.56 0.15 0.74 16 6 C -0.12 -1.96 9.96 22.37 0.22 -1.73 16 7 C -0.11 -1.35 10.04 22.26 0.22 -1.13 16 8 C -0.11 -1.51 10.04 22.26 0.22 -1.29 16 9 C -0.13 -2.62 9.96 22.37 0.22 -2.40 16 10 C 0.02 0.58 6.49 22.56 0.15 0.73 16 11 O -0.31 -9.63 9.76 -69.84 -0.68 -10.31 16 12 C 0.04 1.15 2.55 30.01 0.08 1.23 16 13 H 0.13 2.70 6.00 -2.39 -0.01 2.68 16 14 C 0.52 17.20 6.21 87.66 0.54 17.74 16 15 O -0.57 -24.09 16.21 14.13 0.23 -23.86 16 16 N -0.58 -17.57 2.70 -828.28 -2.24 -19.81 16 17 C 0.05 1.07 6.85 127.77 0.88 1.95 16 18 C 0.11 4.49 4.41 46.75 0.21 4.69 16 19 C 0.16 7.08 7.17 86.48 0.62 7.70 16 20 N -0.64 -32.02 3.69 -717.25 -2.65 -34.66 16 21 C -0.24 -13.05 10.69 84.03 0.90 -12.15 16 22 H 0.08 4.48 7.84 -2.91 -0.02 4.46 16 23 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 24 N -0.95 -56.11 11.30 21.65 0.24 -55.87 16 25 Si 0.98 45.13 29.56 68.60 2.03 47.15 16 26 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 27 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 29 C 0.11 4.57 8.48 86.48 0.73 5.30 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.67 5.80 -2.39 -0.01 1.66 16 32 H 0.10 1.31 6.25 -2.39 -0.01 1.29 16 33 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 34 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 35 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 37 H 0.09 1.59 5.75 -2.39 -0.01 1.57 16 38 H 0.08 1.74 6.59 -2.38 -0.02 1.73 16 39 H 0.10 1.44 4.97 -2.39 -0.01 1.43 16 40 H 0.09 4.08 7.22 -2.39 -0.02 4.06 16 41 H 0.05 1.98 6.78 -2.39 -0.02 1.96 16 42 H 0.05 2.56 6.88 -2.39 -0.02 2.54 16 43 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 44 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.07 2.30 6.91 -2.39 -0.02 2.28 16 Total: -1.00 -75.74 356.14 3.37 -72.36 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 1.02 Total: 14.87 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: 6.25 Total: 17.89 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -4.64 Total: -110.34 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -1.28 Total: -41.94 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -75.74 3.37 -72.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044284396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.680 kcal (2) G-P(sol) polarization free energy of solvation -75.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds