Wall clock time and date at job start Tue Mar 31 2020 17:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.70362 * 2 1 4 4 O 1.43172 * 109.70969 * 239.37417 * 2 1 3 5 5 C 1.36104 * 116.71457 * 194.14045 * 4 2 1 6 6 C 1.38699 * 119.39881 * 197.17996 * 5 4 2 7 7 C 1.38203 * 120.06759 * 180.16567 * 6 5 4 8 8 C 1.38248 * 120.11349 * 0.02562 * 7 6 5 9 9 C 1.38201 * 120.11372 * 359.89877 * 8 7 6 10 10 C 1.38698 * 120.06042 * 0.04878 * 9 8 7 11 11 O 1.36111 * 119.38874 * 180.28137 * 10 9 8 12 12 C 1.43180 * 116.69353 * 197.14238 * 11 10 9 13 13 H 1.08997 * 109.75099 * 73.43237 * 12 11 10 14 14 C 1.50701 * 109.71041 * 194.04689 * 12 11 10 15 15 O 1.21281 * 120.00138 * 24.96240 * 14 12 11 16 16 N 1.34781 * 119.99764 * 204.96263 * 14 12 11 17 17 C 1.46499 * 119.99992 * 6.13918 * 16 14 12 18 18 C 1.46506 * 119.99783 * 186.13363 * 16 14 12 19 19 C 1.53939 * 113.73853 * 143.32598 * 18 16 14 20 20 N 1.47579 * 86.11745 * 90.74018 * 19 18 16 21 21 C 1.36938 * 134.49349 * 204.63697 * 20 19 18 22 22 H 1.07998 * 120.00129 * 179.97438 * 21 20 19 23 23 C 1.38812 * 120.00002 * 0.02562 * 21 20 19 24 24 N 1.31619 * 120.00032 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00069 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46934 * 59.99666 * 25 23 21 27 27 H 1.48496 * 109.47127 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47155 * 299.99967 * 25 23 21 29 29 C 1.47581 * 91.01457 * 24.63632 * 20 19 18 30 30 H 1.09000 * 109.47401 * 301.33783 * 1 2 3 31 31 H 1.09000 * 109.47143 * 61.34128 * 1 2 3 32 32 H 1.09005 * 109.47051 * 181.33884 * 1 2 3 33 33 H 1.07997 * 119.96958 * 0.15483 * 6 5 4 34 34 H 1.07999 * 119.94198 * 179.97438 * 7 6 5 35 35 H 1.08002 * 119.94397 * 179.97438 * 8 7 6 36 36 H 1.07994 * 119.96708 * 180.02562 * 9 8 7 37 37 H 1.09004 * 109.46765 * 264.77475 * 17 16 14 38 38 H 1.08993 * 109.47370 * 24.77153 * 17 16 14 39 39 H 1.09001 * 109.46887 * 144.78134 * 17 16 14 40 40 H 1.08994 * 113.01641 * 11.66428 * 18 16 14 41 41 H 1.09006 * 113.76706 * 205.03918 * 19 18 16 42 42 H 1.09004 * 113.77187 * 336.43889 * 19 18 16 43 43 H 0.96998 * 119.99822 * 180.02562 * 24 23 21 44 44 H 1.08999 * 113.76987 * 221.05731 * 29 20 19 45 45 H 1.09007 * 113.86896 * 89.67465 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 8 2.0129 -0.6866 -1.1598 5 6 3.3291 -1.0331 -1.1620 6 6 3.9436 -1.3655 -2.3602 7 6 5.2785 -1.7227 -2.3780 8 6 6.0049 -1.7503 -1.2020 9 6 5.3991 -1.4187 -0.0049 10 6 4.0600 -1.0583 0.0197 11 8 3.4786 -0.7287 1.2054 12 6 2.0474 -0.7358 1.2440 13 1 1.6839 -1.7633 1.2413 14 6 1.5689 -0.0307 2.4869 15 8 2.2713 0.8019 3.0203 16 7 0.3604 -0.3253 3.0059 17 6 -0.4305 -1.4228 2.4435 18 6 -0.1623 0.4520 4.1324 19 6 -1.6826 0.6859 4.0716 20 7 -1.8047 -0.5636 4.8474 21 6 -2.7869 -1.5051 5.0020 22 1 -2.6235 -2.3549 5.6481 23 6 -3.9923 -1.3679 4.3274 24 7 -4.1913 -0.3325 3.5395 25 14 -5.3319 -2.6526 4.5377 26 1 -5.7271 -2.7261 5.9673 27 1 -6.5113 -2.2769 3.7173 28 1 -4.8225 -3.9758 4.0964 29 6 -0.4430 -0.3908 5.3896 30 1 -0.3634 0.5345 0.8777 31 1 -0.3633 0.4929 -0.9018 32 1 -0.3633 -1.0274 0.0240 33 1 3.3783 -1.3454 -3.2802 34 1 5.7549 -1.9816 -3.3120 35 1 7.0478 -2.0303 -1.2190 36 1 5.9688 -1.4406 0.9122 37 1 -1.1343 -1.0257 1.7120 38 1 0.2337 -2.1375 1.9578 39 1 -0.9794 -1.9215 3.2423 40 1 0.4133 1.3563 4.3298 41 1 -2.0126 1.5729 4.6125 42 1 -2.0973 0.6208 3.0656 43 1 -5.0338 -0.2364 3.0684 44 1 0.1320 -1.3156 5.4361 45 1 -0.4070 0.1795 6.3179 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044284413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:09 Heat of formation + Delta-G solvation = 4.849428 kcal Electronic energy + Delta-G solvation = -29609.077515 eV Core-core repulsion = 25595.571458 eV Total energy + Delta-G solvation = -4013.506058 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.67982 -39.89892 -38.11041 -37.65940 -37.08208 -34.59429 -32.82965 -31.94788 -30.85813 -29.25651 -28.16628 -27.56853 -26.14405 -24.89159 -23.91442 -23.28656 -22.80306 -21.50596 -19.88514 -18.97003 -18.50634 -17.95842 -17.06312 -16.83450 -16.34440 -15.95182 -15.65629 -15.03178 -14.90795 -14.87834 -14.64939 -14.37215 -13.99474 -13.93954 -13.78561 -13.24885 -12.99821 -12.75703 -12.59572 -12.49446 -12.25705 -12.04066 -11.92204 -11.86569 -11.47143 -11.35033 -11.26676 -10.97847 -10.90940 -10.69486 -10.48368 -10.24873 -9.89774 -9.64061 -9.60972 -8.90589 -8.81684 -8.22184 -8.17773 -6.98392 -5.88553 -3.21790 1.11813 1.13934 2.35878 2.68300 2.91038 3.31532 3.37386 3.38068 3.50102 3.60488 4.02763 4.34939 4.42430 4.43979 4.55278 4.76858 4.82394 5.04974 5.06729 5.08257 5.18820 5.23463 5.37252 5.43289 5.51495 5.55051 5.65122 5.74723 5.94722 5.98214 6.00968 6.04820 6.06460 6.14195 6.27408 6.37616 6.41827 6.44984 6.60586 6.75490 6.81102 7.05873 7.17554 7.27030 7.42443 7.69681 7.85677 8.28262 8.92961 9.58801 10.46549 11.27463 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020424 B = 0.003112 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.639056 B = 8995.693907 C = 9591.704070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.069 3.931 3 H 0.091 0.909 4 O -0.300 6.300 5 C 0.050 3.950 6 C -0.114 4.114 7 C -0.120 4.120 8 C -0.118 4.118 9 C -0.113 4.113 10 C 0.055 3.945 11 O -0.283 6.283 12 C 0.037 3.963 13 H 0.109 0.891 14 C 0.524 3.476 15 O -0.526 6.526 16 N -0.567 5.567 17 C 0.061 3.939 18 C 0.088 3.912 19 C 0.155 3.845 20 N -0.608 5.608 21 C -0.227 4.227 22 H 0.079 0.921 23 C -0.002 4.002 24 N -0.918 5.918 25 Si 0.909 3.091 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.284 1.284 29 C 0.106 3.894 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.040 0.960 42 H 0.080 0.920 43 H 0.255 0.745 44 H 0.047 0.953 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.011 -1.726 -11.310 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.012 3.988 3 H 0.109 0.891 4 O -0.214 6.214 5 C 0.005 3.995 6 C -0.133 4.133 7 C -0.138 4.138 8 C -0.136 4.136 9 C -0.132 4.132 10 C 0.009 3.991 11 O -0.196 6.196 12 C -0.023 4.023 13 H 0.126 0.874 14 C 0.309 3.691 15 O -0.402 6.402 16 N -0.299 5.299 17 C -0.081 4.081 18 C -0.017 4.017 19 C 0.029 3.971 20 N -0.335 5.335 21 C -0.354 4.354 22 H 0.097 0.903 23 C -0.199 4.199 24 N -0.564 5.564 25 Si 0.739 3.261 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.210 1.210 29 C -0.020 4.020 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.131 0.869 40 H 0.113 0.887 41 H 0.057 0.943 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.978 -1.408 -11.041 18.660 hybrid contribution -1.043 -0.682 0.347 1.293 sum 13.935 -2.090 -10.693 17.689 Atomic orbital electron populations 1.22229 0.89649 1.04736 1.04669 1.23026 0.97580 0.95527 0.82699 0.89144 1.86347 1.21363 1.73074 1.40646 1.18997 0.84551 1.02456 0.93507 1.20447 0.94741 1.02554 0.95555 1.20902 0.93186 1.01105 0.98602 1.20902 1.00140 1.00977 0.91561 1.20464 0.91871 1.01239 0.99580 1.19052 0.93995 1.02019 0.84011 1.86373 1.19086 1.84663 1.29496 1.23184 0.80916 1.02123 0.96099 0.87395 1.19459 0.82043 0.83318 0.84305 1.90704 1.54441 1.33977 1.61094 1.47343 1.16621 1.33453 1.32492 1.22401 0.95358 0.88372 1.01988 1.23022 0.97932 0.94231 0.86485 1.22633 0.87067 0.89067 0.98376 1.46159 1.12723 1.22727 1.51887 1.18947 0.92959 0.99869 1.23672 0.90338 1.24741 0.97498 0.97989 0.99695 1.69786 1.25065 1.29281 1.32317 0.86258 0.81521 0.80767 0.77540 1.21260 1.21569 1.21038 1.22999 0.87586 0.97126 0.94335 0.88656 0.90400 0.90192 0.84805 0.85152 0.85104 0.84708 0.91135 0.92982 0.86856 0.88653 0.94276 0.90141 0.93495 0.93477 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 7.63 37.16 0.28 -1.65 16 2 C 0.07 0.94 3.17 -26.47 -0.08 0.85 16 3 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 4 O -0.30 -4.12 10.07 -32.86 -0.33 -4.45 16 5 C 0.05 0.67 6.49 -39.14 -0.25 0.41 16 6 C -0.11 -1.23 9.96 -39.42 -0.39 -1.62 16 7 C -0.12 -1.07 10.04 -39.59 -0.40 -1.47 16 8 C -0.12 -1.08 10.04 -39.59 -0.40 -1.48 16 9 C -0.11 -1.31 9.96 -39.42 -0.39 -1.70 16 10 C 0.05 0.77 6.49 -39.14 -0.25 0.52 16 11 O -0.28 -4.58 9.74 -46.38 -0.45 -5.03 16 12 C 0.04 0.55 2.59 -27.62 -0.07 0.48 16 13 H 0.11 1.49 5.91 -51.93 -0.31 1.18 16 14 C 0.52 9.04 6.26 -10.98 -0.07 8.97 16 15 O -0.53 -10.71 16.22 -12.78 -0.21 -10.92 16 16 N -0.57 -9.69 2.42 -175.75 -0.43 -10.11 16 17 C 0.06 0.99 7.41 59.85 0.44 1.43 16 18 C 0.09 1.62 4.49 -70.15 -0.31 1.31 16 19 C 0.15 3.31 6.75 -2.98 -0.02 3.29 16 20 N -0.61 -14.02 2.32 -178.11 -0.41 -14.43 16 21 C -0.23 -5.78 9.84 -15.06 -0.15 -5.93 16 22 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 23 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 24 N -0.92 -24.74 11.38 55.49 0.63 -24.10 16 25 Si 0.91 20.72 29.55 -169.99 -5.02 15.69 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 C 0.11 2.09 8.38 -2.98 -0.02 2.06 16 30 H 0.09 1.30 5.88 -51.93 -0.31 1.00 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.95 6.58 -51.93 -0.34 0.61 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 37 H 0.07 1.15 5.43 -51.93 -0.28 0.86 16 38 H 0.05 0.71 5.71 -51.93 -0.30 0.41 16 39 H 0.11 2.22 5.61 -51.93 -0.29 1.92 16 40 H 0.10 1.74 7.30 -51.93 -0.38 1.36 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.08 1.85 6.72 -51.93 -0.35 1.50 16 43 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 356.24 15.07 5.37 5.37 Total: -1.00 -30.12 356.24 -8.94 -39.06 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.90 Total: 3.59 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -2.19 Total: 5.33 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.21 Total: -48.65 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.99 Total: -20.40 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.12 -8.94 -39.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044284413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.912 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds