Wall clock time and date at job start Tue Mar 31 2020 17:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.70362 * 2 1 4 4 O 1.43172 * 109.70969 * 239.37417 * 2 1 3 5 5 C 1.36104 * 116.71457 * 194.14045 * 4 2 1 6 6 C 1.38699 * 119.39881 * 197.17996 * 5 4 2 7 7 C 1.38203 * 120.06759 * 180.16567 * 6 5 4 8 8 C 1.38248 * 120.11349 * 0.02562 * 7 6 5 9 9 C 1.38201 * 120.11372 * 359.89877 * 8 7 6 10 10 C 1.38698 * 120.06042 * 0.04878 * 9 8 7 11 11 O 1.36111 * 119.38874 * 180.28137 * 10 9 8 12 12 C 1.43180 * 116.69353 * 197.14238 * 11 10 9 13 13 H 1.08997 * 109.75099 * 73.43237 * 12 11 10 14 14 C 1.50701 * 109.71041 * 194.04689 * 12 11 10 15 15 O 1.21281 * 120.00138 * 24.96240 * 14 12 11 16 16 N 1.34781 * 119.99764 * 204.96263 * 14 12 11 17 17 C 1.46499 * 119.99992 * 6.13918 * 16 14 12 18 18 C 1.46506 * 119.99783 * 186.13363 * 16 14 12 19 19 C 1.53939 * 113.73853 * 143.32598 * 18 16 14 20 20 N 1.47579 * 86.11745 * 90.74018 * 19 18 16 21 21 C 1.36938 * 134.49349 * 204.63697 * 20 19 18 22 22 H 1.07998 * 120.00129 * 179.97438 * 21 20 19 23 23 C 1.38812 * 120.00002 * 0.02562 * 21 20 19 24 24 N 1.31619 * 120.00032 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00069 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46934 * 59.99666 * 25 23 21 27 27 H 1.48496 * 109.47127 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47155 * 299.99967 * 25 23 21 29 29 C 1.47581 * 91.01457 * 24.63632 * 20 19 18 30 30 H 1.09000 * 109.47401 * 301.33783 * 1 2 3 31 31 H 1.09000 * 109.47143 * 61.34128 * 1 2 3 32 32 H 1.09005 * 109.47051 * 181.33884 * 1 2 3 33 33 H 1.07997 * 119.96958 * 0.15483 * 6 5 4 34 34 H 1.07999 * 119.94198 * 179.97438 * 7 6 5 35 35 H 1.08002 * 119.94397 * 179.97438 * 8 7 6 36 36 H 1.07994 * 119.96708 * 180.02562 * 9 8 7 37 37 H 1.09004 * 109.46765 * 264.77475 * 17 16 14 38 38 H 1.08993 * 109.47370 * 24.77153 * 17 16 14 39 39 H 1.09001 * 109.46887 * 144.78134 * 17 16 14 40 40 H 1.08994 * 113.01641 * 11.66428 * 18 16 14 41 41 H 1.09006 * 113.76706 * 205.03918 * 19 18 16 42 42 H 1.09004 * 113.77187 * 336.43889 * 19 18 16 43 43 H 0.96998 * 119.99822 * 180.02562 * 24 23 21 44 44 H 1.08999 * 113.76987 * 221.05731 * 29 20 19 45 45 H 1.09007 * 113.86896 * 89.67465 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 8 2.0129 -0.6866 -1.1598 5 6 3.3291 -1.0331 -1.1620 6 6 3.9436 -1.3655 -2.3602 7 6 5.2785 -1.7227 -2.3780 8 6 6.0049 -1.7503 -1.2020 9 6 5.3991 -1.4187 -0.0049 10 6 4.0600 -1.0583 0.0197 11 8 3.4786 -0.7287 1.2054 12 6 2.0474 -0.7358 1.2440 13 1 1.6839 -1.7633 1.2413 14 6 1.5689 -0.0307 2.4869 15 8 2.2713 0.8019 3.0203 16 7 0.3604 -0.3253 3.0059 17 6 -0.4305 -1.4228 2.4435 18 6 -0.1623 0.4520 4.1324 19 6 -1.6826 0.6859 4.0716 20 7 -1.8047 -0.5636 4.8474 21 6 -2.7869 -1.5051 5.0020 22 1 -2.6235 -2.3549 5.6481 23 6 -3.9923 -1.3679 4.3274 24 7 -4.1913 -0.3325 3.5395 25 14 -5.3319 -2.6526 4.5377 26 1 -5.7271 -2.7261 5.9673 27 1 -6.5113 -2.2769 3.7173 28 1 -4.8225 -3.9758 4.0964 29 6 -0.4430 -0.3908 5.3896 30 1 -0.3634 0.5345 0.8777 31 1 -0.3633 0.4929 -0.9018 32 1 -0.3633 -1.0274 0.0240 33 1 3.3783 -1.3454 -3.2802 34 1 5.7549 -1.9816 -3.3120 35 1 7.0478 -2.0303 -1.2190 36 1 5.9688 -1.4406 0.9122 37 1 -1.1343 -1.0257 1.7120 38 1 0.2337 -2.1375 1.9578 39 1 -0.9794 -1.9215 3.2423 40 1 0.4133 1.3563 4.3298 41 1 -2.0126 1.5729 4.6125 42 1 -2.0973 0.6208 3.0656 43 1 -5.0338 -0.2364 3.0684 44 1 0.1320 -1.3156 5.4361 45 1 -0.4070 0.1795 6.3179 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044284413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:08 Heat of formation + Delta-G solvation = -10.967763 kcal Electronic energy + Delta-G solvation = -29609.763400 eV Core-core repulsion = 25595.571458 eV Total energy + Delta-G solvation = -4014.191942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.76030 -41.27372 -39.47433 -38.69112 -38.25495 -36.03944 -34.32739 -33.48208 -31.72669 -30.17564 -29.83478 -28.79701 -27.62287 -26.57964 -25.15916 -24.68041 -23.70466 -22.77438 -21.16592 -20.04999 -19.90580 -19.22364 -18.63543 -18.06712 -17.61734 -17.09837 -17.00745 -16.69785 -16.12154 -15.91819 -15.75478 -15.58618 -15.46851 -15.22803 -14.86244 -14.56799 -14.34249 -14.28315 -14.05914 -13.52752 -13.49850 -13.22633 -13.19948 -12.91041 -12.83114 -12.78488 -12.69540 -12.46543 -12.34374 -12.03465 -11.95077 -11.64992 -11.54130 -11.47075 -11.07458 -10.75284 -9.69362 -9.66292 -9.14241 -8.85931 -7.85574 -5.18864 0.27983 0.28998 1.07860 1.38429 1.50798 1.52133 1.57651 1.89626 2.34795 2.49780 2.72546 2.93655 3.13595 3.30866 3.40230 3.43355 3.50983 3.75328 3.82727 3.96177 4.12187 4.26152 4.27978 4.39442 4.40839 4.46500 4.47564 4.57345 4.66100 4.71666 4.78492 4.85252 4.87582 5.00301 5.05830 5.17295 5.21073 5.25303 5.30297 5.48258 5.50517 5.61245 5.70129 5.81314 5.93667 6.27219 6.30824 6.86771 6.95988 7.64212 8.57543 9.29606 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020424 B = 0.003112 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.639056 B = 8995.693907 C = 9591.704070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 H 0.080 0.920 4 O -0.304 6.304 5 C 0.024 3.976 6 C -0.118 4.118 7 C -0.108 4.108 8 C -0.108 4.108 9 C -0.125 4.125 10 C 0.021 3.979 11 O -0.308 6.308 12 C 0.043 3.957 13 H 0.120 0.880 14 C 0.528 3.472 15 O -0.559 6.559 16 N -0.564 5.564 17 C 0.070 3.930 18 C 0.106 3.894 19 C 0.158 3.842 20 N -0.625 5.625 21 C -0.231 4.231 22 H 0.079 0.921 23 C -0.049 4.049 24 N -0.942 5.942 25 Si 0.967 3.033 26 H -0.287 1.287 27 H -0.297 1.297 28 H -0.275 1.275 29 C 0.109 3.891 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.151 0.849 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.139 0.861 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.031 0.969 42 H 0.062 0.938 43 H 0.249 0.751 44 H 0.052 0.948 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.722 -3.094 -12.943 21.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.018 3.982 3 H 0.098 0.902 4 O -0.219 6.219 5 C -0.021 4.021 6 C -0.137 4.137 7 C -0.126 4.126 8 C -0.126 4.126 9 C -0.143 4.143 10 C -0.023 4.023 11 O -0.222 6.222 12 C -0.017 4.017 13 H 0.137 0.863 14 C 0.315 3.685 15 O -0.438 6.438 16 N -0.295 5.295 17 C -0.072 4.072 18 C 0.001 3.999 19 C 0.032 3.968 20 N -0.352 5.352 21 C -0.359 4.359 22 H 0.097 0.903 23 C -0.244 4.244 24 N -0.590 5.590 25 Si 0.796 3.204 26 H -0.214 1.214 27 H -0.223 1.223 28 H -0.201 1.201 29 C -0.017 4.017 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.168 0.832 34 H 0.186 0.814 35 H 0.183 0.817 36 H 0.157 0.843 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.049 0.951 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.715 -2.798 -12.673 21.162 hybrid contribution -1.410 -0.275 0.804 1.646 sum 15.305 -3.072 -11.870 19.611 Atomic orbital electron populations 1.22159 0.88823 1.05028 1.04636 1.22908 0.98019 0.94862 0.82371 0.90173 1.86323 1.22058 1.73276 1.40206 1.19347 0.84421 1.03933 0.94350 1.20818 0.95768 1.01910 0.95197 1.21391 0.92299 0.98850 1.00047 1.21350 1.01657 0.99040 0.90551 1.20769 0.91121 1.01371 1.01062 1.19424 0.95099 1.04222 0.83570 1.86310 1.19250 1.85516 1.31135 1.23093 0.81170 1.02336 0.95138 0.86319 1.19801 0.81391 0.82718 0.84578 1.90680 1.55323 1.35513 1.62251 1.47316 1.16734 1.33383 1.32104 1.22317 0.95655 0.88319 1.00881 1.22725 0.96090 0.94489 0.86621 1.22510 0.88942 0.88283 0.97064 1.46330 1.13413 1.22855 1.52614 1.19199 0.93421 1.00343 1.22906 0.90297 1.25368 0.99299 0.99724 0.99969 1.69939 1.25018 1.30761 1.33318 0.85336 0.78919 0.79140 0.76964 1.21377 1.22335 1.20097 1.23100 0.85802 0.97625 0.95130 0.90187 0.88992 0.89610 0.83160 0.81410 0.81673 0.84275 0.91185 0.90124 0.89745 0.88015 0.95121 0.91960 0.94224 0.92972 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 7.63 71.98 0.55 -3.11 16 2 C 0.08 2.06 3.17 30.77 0.10 2.16 16 3 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 4 O -0.30 -8.16 10.07 -82.51 -0.83 -8.99 16 5 C 0.02 0.62 6.49 22.56 0.15 0.77 16 6 C -0.12 -2.26 9.96 22.37 0.22 -2.03 16 7 C -0.11 -1.51 10.04 22.26 0.22 -1.29 16 8 C -0.11 -1.62 10.04 22.26 0.22 -1.40 16 9 C -0.12 -2.72 9.96 22.37 0.22 -2.50 16 10 C 0.02 0.59 6.49 22.56 0.15 0.74 16 11 O -0.31 -10.08 9.74 -69.68 -0.68 -10.75 16 12 C 0.04 1.28 2.59 30.02 0.08 1.36 16 13 H 0.12 3.21 5.91 -2.39 -0.01 3.20 16 14 C 0.53 18.37 6.26 87.66 0.55 18.92 16 15 O -0.56 -23.09 16.22 14.50 0.24 -22.86 16 16 N -0.56 -19.34 2.42 -828.35 -2.01 -21.35 16 17 C 0.07 2.27 7.41 127.77 0.95 3.22 16 18 C 0.11 3.94 4.49 46.75 0.21 4.15 16 19 C 0.16 6.90 6.75 86.48 0.58 7.48 16 20 N -0.62 -29.04 2.32 -717.41 -1.66 -30.70 16 21 C -0.23 -11.78 9.84 84.03 0.83 -10.96 16 22 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 23 C -0.05 -2.57 5.50 84.86 0.47 -2.10 16 24 N -0.94 -51.58 11.38 21.65 0.25 -51.33 16 25 Si 0.97 42.75 29.55 68.60 2.03 44.77 16 26 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 27 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 28 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 29 C 0.11 4.26 8.38 86.48 0.72 4.98 16 30 H 0.08 2.22 5.88 -2.39 -0.01 2.20 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.09 1.97 6.58 -2.38 -0.02 1.96 16 33 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 35 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 36 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 37 H 0.07 2.29 5.43 -2.39 -0.01 2.27 16 38 H 0.08 2.12 5.71 -2.39 -0.01 2.10 16 39 H 0.08 3.31 5.61 -2.39 -0.01 3.30 16 40 H 0.10 3.72 7.30 -2.39 -0.02 3.70 16 41 H 0.03 1.39 8.14 -2.38 -0.02 1.38 16 42 H 0.06 2.95 6.72 -2.38 -0.02 2.93 16 43 H 0.25 13.46 8.31 -92.71 -0.77 12.69 16 44 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -65.56 356.24 4.57 -61.00 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 1.02 Total: 19.81 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 6.22 Total: 20.40 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -3.42 Total: -103.38 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -1.27 Total: -42.60 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -65.56 4.57 -61.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044284413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.028 kcal (2) G-P(sol) polarization free energy of solvation -65.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds