Wall clock time and date at job start Tue Mar 31 2020 17:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.88509 * 2 1 4 4 C 1.55132 * 110.90580 * 124.08863 * 2 1 3 5 5 N 1.47424 * 104.72393 * 155.27797 * 4 2 1 6 6 C 1.34769 * 125.64660 * 155.81868 * 5 4 2 7 7 O 1.21589 * 120.00302 * 4.55609 * 6 5 4 8 8 C 1.47549 * 120.00008 * 184.55502 * 6 5 4 9 9 C 1.39768 * 120.14079 * 312.74126 * 8 6 5 10 10 C 1.37750 * 119.95293 * 179.72547 * 9 8 6 11 11 C 1.38487 * 120.32518 * 0.59504 * 10 9 8 12 12 C 1.38587 * 120.41228 * 359.41454 * 11 10 9 13 13 C 1.38985 * 119.90962 * 0.22490 * 12 11 10 14 14 O 1.35821 * 120.87553 * 180.21348 * 13 12 11 15 15 C 1.43176 * 116.71706 * 342.71535 * 14 13 12 16 16 C 1.53474 * 108.23001 * 46.23932 * 15 14 13 17 17 O 1.36146 * 119.36629 * 180.08230 * 12 11 10 18 18 C 1.47026 * 108.70094 * 335.55345 * 5 4 2 19 19 C 1.54320 * 107.27019 * 1.28647 * 18 5 4 20 20 H 1.09001 * 110.71821 * 140.55641 * 19 18 5 21 21 N 1.46494 * 110.72128 * 263.65158 * 19 18 5 22 22 C 1.36936 * 120.00137 * 273.54516 * 21 19 18 23 23 H 1.08002 * 119.99964 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00281 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99662 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00152 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46976 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47186 * 120.00408 * 26 24 22 29 29 H 1.48502 * 109.46832 * 240.00482 * 26 24 22 30 30 H 1.09000 * 109.46796 * 183.88533 * 1 2 3 31 31 H 1.08996 * 109.47332 * 303.89071 * 1 2 3 32 32 H 1.09007 * 109.46784 * 63.88896 * 1 2 3 33 33 H 1.09001 * 110.49263 * 36.43180 * 4 2 1 34 34 H 1.09002 * 110.33965 * 274.04033 * 4 2 1 35 35 H 1.08005 * 120.02075 * 0.02562 * 9 8 6 36 36 H 1.07997 * 119.83262 * 180.34546 * 10 9 8 37 37 H 1.08003 * 119.79280 * 179.68738 * 11 10 9 38 38 H 1.08998 * 109.71395 * 286.55746 * 15 14 13 39 39 H 1.09001 * 109.71609 * 165.92330 * 15 14 13 40 40 H 1.09005 * 109.70931 * 180.60838 * 16 15 14 41 41 H 1.08999 * 109.70542 * 59.98688 * 16 15 14 42 42 H 1.08998 * 109.87593 * 120.70439 * 18 5 4 43 43 H 1.08998 * 109.87721 * 241.71844 * 18 5 4 44 44 H 0.97003 * 120.00111 * 93.55287 * 21 19 18 45 45 H 0.97004 * 119.99828 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8122 1.2002 5 7 3.4271 -1.2432 0.7731 6 6 4.4475 -1.5620 1.5938 7 8 4.2753 -1.5858 2.7971 8 6 5.7738 -1.8820 1.0319 9 6 5.8855 -2.7694 -0.0420 10 6 7.1251 -3.0611 -0.5672 11 6 8.2651 -2.4884 -0.0284 12 6 8.1711 -1.6067 1.0367 13 6 6.9265 -1.2972 1.5723 14 8 6.8112 -0.4324 2.6132 15 6 8.0016 -0.1639 3.3619 16 6 9.1417 0.1061 2.3705 17 8 9.3054 -1.0548 1.5488 18 6 3.4675 -1.2739 -0.6963 19 6 2.0862 -0.8076 -1.2024 20 1 2.1923 -0.1694 -2.0796 21 7 1.2284 -1.9570 -1.5007 22 6 1.2849 -2.5521 -2.7327 23 1 1.9621 -2.1743 -3.4843 24 6 0.4724 -3.6416 -3.0152 25 7 -0.3526 -4.1023 -2.0990 26 14 0.5500 -4.4538 -4.6956 27 1 1.5508 -3.7519 -5.5388 28 1 0.9452 -5.8767 -4.5399 29 1 -0.7840 -4.3785 -5.3438 30 1 -0.3633 -1.0253 0.0696 31 1 -0.3634 0.5730 0.8530 32 1 -0.3633 0.4523 -0.9229 33 1 1.4523 -1.6785 1.3983 34 1 2.1515 -0.1807 2.0860 35 1 5.0000 -3.2225 -0.4630 36 1 7.2087 -3.7428 -1.4006 37 1 9.2332 -2.7270 -0.4436 38 1 8.2492 -1.0263 3.9808 39 1 7.8491 0.7111 3.9939 40 1 10.0644 0.3033 2.9163 41 1 8.8915 0.9650 1.7478 42 1 4.2427 -0.5994 -1.0599 43 1 3.6678 -2.2885 -1.0404 44 1 0.6203 -2.2966 -0.8255 45 1 -0.9206 -4.8635 -2.2965 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054719247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:57 Heat of formation + Delta-G solvation = -53.756934 kcal Electronic energy + Delta-G solvation = -29253.340902 eV Core-core repulsion = 25237.293482 eV Total energy + Delta-G solvation = -4016.047420 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.46488 -39.76899 -37.87573 -37.52400 -36.95199 -33.92147 -32.51023 -31.38009 -30.91947 -30.39767 -28.59694 -27.70819 -26.34976 -24.85621 -24.10171 -23.52294 -21.87694 -21.11151 -19.73560 -19.25911 -18.50935 -17.73002 -17.54569 -17.06305 -16.39064 -15.62949 -15.53128 -15.20959 -15.01892 -14.82486 -14.59430 -14.42095 -14.24732 -13.95921 -13.61153 -13.28785 -13.05623 -13.01803 -12.64426 -12.34147 -11.99145 -11.95063 -11.90032 -11.44482 -11.31445 -11.28227 -11.10782 -10.95625 -10.83669 -10.74616 -10.42555 -10.23517 -9.90528 -9.68026 -9.57667 -9.02391 -8.73407 -8.21236 -8.17037 -7.07214 -5.84816 -3.14850 0.89572 1.21464 2.80933 2.94377 3.05168 3.31282 3.38562 3.44552 3.46947 3.70595 3.98907 4.42997 4.51847 4.55919 4.64296 4.79718 4.93856 4.94884 5.13303 5.17264 5.19763 5.21687 5.35067 5.37574 5.53547 5.57717 5.65759 5.80827 5.90333 5.95754 5.99743 6.02034 6.20374 6.26680 6.32796 6.36759 6.39824 6.47626 6.55467 6.66763 6.73063 6.78185 6.93781 7.23319 7.63709 7.90860 8.33016 8.48384 9.45124 10.00142 10.35170 11.37294 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.003512 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.577641 B = 7971.124938 C = 9291.016452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.079 0.921 4 C 0.117 3.883 5 N -0.601 5.601 6 C 0.578 3.422 7 O -0.537 6.537 8 C -0.116 4.116 9 C -0.081 4.081 10 C -0.119 4.119 11 C -0.096 4.096 12 C 0.037 3.963 13 C 0.096 3.904 14 O -0.289 6.289 15 C 0.019 3.981 16 C 0.020 3.980 17 O -0.307 6.307 18 C 0.069 3.931 19 C 0.172 3.828 20 H 0.070 0.930 21 N -0.712 5.712 22 C -0.246 4.246 23 H 0.073 0.927 24 C -0.008 4.008 25 N -0.928 5.928 26 Si 0.906 3.094 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.078 0.922 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.387 0.613 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.989 9.169 6.850 20.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.134 4.134 3 H 0.097 0.903 4 C -0.005 4.005 5 N -0.334 5.334 6 C 0.366 3.634 7 O -0.415 6.415 8 C -0.119 4.119 9 C -0.099 4.099 10 C -0.138 4.138 11 C -0.115 4.115 12 C -0.008 4.008 13 C 0.049 3.951 14 O -0.202 6.202 15 C -0.056 4.056 16 C -0.056 4.056 17 O -0.222 6.222 18 C -0.057 4.057 19 C 0.060 3.940 20 H 0.088 0.912 21 N -0.354 5.354 22 C -0.377 4.377 23 H 0.091 0.909 24 C -0.205 4.205 25 N -0.576 5.576 26 Si 0.737 3.263 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.097 0.903 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.223 0.777 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.979 9.117 7.403 20.645 hybrid contribution 0.053 -0.573 -0.595 0.828 sum 17.032 8.545 6.808 20.235 Atomic orbital electron populations 1.21544 0.93354 1.02977 1.00967 1.22657 0.96943 0.98445 0.95347 0.90302 1.22308 0.82638 0.98338 0.97235 1.48320 1.11639 1.65637 1.07801 1.17535 0.82960 0.77284 0.85615 1.90759 1.83626 1.52826 1.14329 1.19240 0.91872 1.01128 0.99692 1.21427 0.99164 0.95889 0.93423 1.20884 0.91047 1.00990 1.00834 1.20551 1.00005 0.97209 0.93749 1.18714 0.84519 1.00233 0.97285 1.18732 0.92228 0.94175 0.89936 1.86408 1.33764 1.59159 1.40852 1.23666 0.84560 1.03756 0.93641 1.23645 1.01122 0.87393 0.93404 1.86309 1.28164 1.43103 1.64615 1.23427 1.01450 1.02231 0.78549 1.21203 0.88315 0.89864 0.94640 0.91218 1.42464 1.45451 1.32803 1.14640 1.19269 1.18541 1.09382 0.90484 0.90922 1.24747 0.98970 0.98896 0.97878 1.69669 1.27342 1.27416 1.33152 0.86146 0.77259 0.79210 0.83700 1.20477 1.21870 1.21871 0.91186 0.93663 0.92096 0.91094 0.91322 0.83571 0.84262 0.84568 0.90330 0.86020 0.86061 0.90459 0.92729 0.90164 0.77714 0.93430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.85 37.16 0.33 -1.72 16 2 C -0.11 -1.80 3.53 -88.35 -0.31 -2.12 16 3 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.12 2.01 6.34 -2.41 -0.02 1.99 16 5 N -0.60 -10.78 3.32 -171.60 -0.57 -11.35 16 6 C 0.58 11.00 7.12 -12.47 -0.09 10.91 16 7 O -0.54 -11.74 16.71 -6.88 -0.11 -11.85 16 8 C -0.12 -1.91 5.43 -104.83 -0.57 -2.48 16 9 C -0.08 -1.16 8.52 -39.19 -0.33 -1.50 16 10 C -0.12 -1.41 10.02 -39.67 -0.40 -1.81 16 11 C -0.10 -1.12 9.95 -39.36 -0.39 -1.52 16 12 C 0.04 0.49 6.49 -39.18 -0.25 0.24 16 13 C 0.10 1.48 6.48 -38.61 -0.25 1.23 16 14 O -0.29 -4.34 9.34 -42.56 -0.40 -4.74 16 15 C 0.02 0.19 7.26 37.40 0.27 0.46 16 16 C 0.02 0.16 7.26 37.40 0.27 0.44 16 17 O -0.31 -3.57 10.42 -33.02 -0.34 -3.91 16 18 C 0.07 1.19 5.38 -3.06 -0.02 1.17 16 19 C 0.17 3.14 3.36 -66.10 -0.22 2.92 16 20 H 0.07 1.25 8.12 -51.93 -0.42 0.83 16 21 N -0.71 -16.27 4.62 -51.66 -0.24 -16.51 16 22 C -0.25 -6.28 9.98 -15.06 -0.15 -6.43 16 23 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 24 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 25 N -0.93 -26.73 13.06 55.49 0.72 -26.01 16 26 Si 0.91 21.33 29.55 -169.99 -5.02 16.30 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 H 0.07 1.27 6.39 -51.93 -0.33 0.94 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.32 7.99 -51.93 -0.41 0.90 16 34 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 35 H 0.15 2.18 5.91 -52.48 -0.31 1.87 16 36 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.12 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.08 1.48 5.87 -51.93 -0.30 1.18 16 44 H 0.39 9.55 6.11 -40.82 -0.25 9.30 16 45 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -32.75 365.67 -8.91 -41.66 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.23 Total: 9.44 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -2.23 Total: 1.46 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.08 Total: -53.87 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.86 Total: -20.51 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.75 -8.91 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054719247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.101 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds