Wall clock time and date at job start Tue Mar 31 2020 17:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.88509 * 2 1 4 4 C 1.55132 * 110.90580 * 124.08863 * 2 1 3 5 5 N 1.47424 * 104.72393 * 155.27797 * 4 2 1 6 6 C 1.34769 * 125.64660 * 155.81868 * 5 4 2 7 7 O 1.21589 * 120.00302 * 4.55609 * 6 5 4 8 8 C 1.47549 * 120.00008 * 184.55502 * 6 5 4 9 9 C 1.39768 * 120.14079 * 312.74126 * 8 6 5 10 10 C 1.37750 * 119.95293 * 179.72547 * 9 8 6 11 11 C 1.38487 * 120.32518 * 0.59504 * 10 9 8 12 12 C 1.38587 * 120.41228 * 359.41454 * 11 10 9 13 13 C 1.38985 * 119.90962 * 0.22490 * 12 11 10 14 14 O 1.35821 * 120.87553 * 180.21348 * 13 12 11 15 15 C 1.43176 * 116.71706 * 342.71535 * 14 13 12 16 16 C 1.53474 * 108.23001 * 46.23932 * 15 14 13 17 17 O 1.36146 * 119.36629 * 180.08230 * 12 11 10 18 18 C 1.47026 * 108.70094 * 335.55345 * 5 4 2 19 19 C 1.54320 * 107.27019 * 1.28647 * 18 5 4 20 20 H 1.09001 * 110.71821 * 140.55641 * 19 18 5 21 21 N 1.46494 * 110.72128 * 263.65158 * 19 18 5 22 22 C 1.36936 * 120.00137 * 273.54516 * 21 19 18 23 23 H 1.08002 * 119.99964 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00281 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99662 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00152 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46976 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47186 * 120.00408 * 26 24 22 29 29 H 1.48502 * 109.46832 * 240.00482 * 26 24 22 30 30 H 1.09000 * 109.46796 * 183.88533 * 1 2 3 31 31 H 1.08996 * 109.47332 * 303.89071 * 1 2 3 32 32 H 1.09007 * 109.46784 * 63.88896 * 1 2 3 33 33 H 1.09001 * 110.49263 * 36.43180 * 4 2 1 34 34 H 1.09002 * 110.33965 * 274.04033 * 4 2 1 35 35 H 1.08005 * 120.02075 * 0.02562 * 9 8 6 36 36 H 1.07997 * 119.83262 * 180.34546 * 10 9 8 37 37 H 1.08003 * 119.79280 * 179.68738 * 11 10 9 38 38 H 1.08998 * 109.71395 * 286.55746 * 15 14 13 39 39 H 1.09001 * 109.71609 * 165.92330 * 15 14 13 40 40 H 1.09005 * 109.70931 * 180.60838 * 16 15 14 41 41 H 1.08999 * 109.70542 * 59.98688 * 16 15 14 42 42 H 1.08998 * 109.87593 * 120.70439 * 18 5 4 43 43 H 1.08998 * 109.87721 * 241.71844 * 18 5 4 44 44 H 0.97003 * 120.00111 * 93.55287 * 21 19 18 45 45 H 0.97004 * 119.99828 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8122 1.2002 5 7 3.4271 -1.2432 0.7731 6 6 4.4475 -1.5620 1.5938 7 8 4.2753 -1.5858 2.7971 8 6 5.7738 -1.8820 1.0319 9 6 5.8855 -2.7694 -0.0420 10 6 7.1251 -3.0611 -0.5672 11 6 8.2651 -2.4884 -0.0284 12 6 8.1711 -1.6067 1.0367 13 6 6.9265 -1.2972 1.5723 14 8 6.8112 -0.4324 2.6132 15 6 8.0016 -0.1639 3.3619 16 6 9.1417 0.1061 2.3705 17 8 9.3054 -1.0548 1.5488 18 6 3.4675 -1.2739 -0.6963 19 6 2.0862 -0.8076 -1.2024 20 1 2.1923 -0.1694 -2.0796 21 7 1.2284 -1.9570 -1.5007 22 6 1.2849 -2.5521 -2.7327 23 1 1.9621 -2.1743 -3.4843 24 6 0.4724 -3.6416 -3.0152 25 7 -0.3526 -4.1023 -2.0990 26 14 0.5500 -4.4538 -4.6956 27 1 1.5508 -3.7519 -5.5388 28 1 0.9452 -5.8767 -4.5399 29 1 -0.7840 -4.3785 -5.3438 30 1 -0.3633 -1.0253 0.0696 31 1 -0.3634 0.5730 0.8530 32 1 -0.3633 0.4523 -0.9229 33 1 1.4523 -1.6785 1.3983 34 1 2.1515 -0.1807 2.0860 35 1 5.0000 -3.2225 -0.4630 36 1 7.2087 -3.7428 -1.4006 37 1 9.2332 -2.7270 -0.4436 38 1 8.2492 -1.0263 3.9808 39 1 7.8491 0.7111 3.9939 40 1 10.0644 0.3033 2.9163 41 1 8.8915 0.9650 1.7478 42 1 4.2427 -0.5994 -1.0599 43 1 3.6678 -2.2885 -1.0404 44 1 0.6203 -2.2966 -0.8255 45 1 -0.9206 -4.8635 -2.2965 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054719247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:56 Heat of formation + Delta-G solvation = -74.406818 kcal Electronic energy + Delta-G solvation = -29254.236348 eV Core-core repulsion = 25237.293482 eV Total energy + Delta-G solvation = -4016.942866 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.43301 -41.12900 -39.16795 -38.54268 -38.09781 -35.69095 -34.02477 -32.40185 -32.20169 -31.79136 -29.53871 -29.30001 -27.65570 -25.83279 -25.72283 -24.90354 -23.24162 -21.99228 -20.96269 -20.71807 -19.60329 -19.33474 -18.61363 -18.25827 -17.67716 -17.09402 -16.51961 -16.41088 -16.25476 -16.10109 -15.80660 -15.66057 -15.39320 -15.32552 -14.89003 -14.63404 -14.48436 -14.18939 -14.03484 -13.57637 -13.34961 -13.20108 -13.08767 -12.91298 -12.83331 -12.66101 -12.35393 -12.23711 -12.05538 -12.03309 -11.94220 -11.75858 -11.45312 -11.35818 -11.06223 -10.87040 -9.83669 -9.59957 -9.20051 -8.98924 -7.89042 -5.17607 -0.18601 0.20948 1.52237 1.53388 1.60213 1.62498 1.88817 2.03239 2.21996 2.60471 2.61635 3.15205 3.40134 3.42538 3.62389 3.79480 3.86569 3.89672 3.91024 3.95780 4.08179 4.12668 4.21471 4.28363 4.41700 4.48239 4.54518 4.60264 4.62443 4.64128 4.71353 4.86839 4.93992 4.96883 5.01102 5.05688 5.20289 5.26257 5.31646 5.36045 5.54895 5.55740 5.61908 5.82702 6.29401 6.31968 6.47739 7.03679 7.39832 8.13052 8.36855 9.34399 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.003512 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.577641 B = 7971.124938 C = 9291.016452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.098 4.098 3 H 0.109 0.891 4 C 0.115 3.885 5 N -0.603 5.603 6 C 0.573 3.427 7 O -0.577 6.577 8 C -0.145 4.145 9 C -0.090 4.090 10 C -0.110 4.110 11 C -0.087 4.087 12 C 0.036 3.964 13 C 0.082 3.918 14 O -0.320 6.320 15 C 0.009 3.991 16 C 0.020 3.980 17 O -0.312 6.312 18 C 0.081 3.919 19 C 0.164 3.836 20 H 0.083 0.917 21 N -0.722 5.722 22 C -0.233 4.233 23 H 0.084 0.916 24 C -0.073 4.073 25 N -0.969 5.969 26 Si 0.967 3.033 27 H -0.261 1.261 28 H -0.300 1.300 29 H -0.300 1.300 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.134 0.866 36 H 0.169 0.831 37 H 0.168 0.832 38 H 0.077 0.923 39 H 0.149 0.851 40 H 0.161 0.839 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.375 0.625 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.887 10.683 5.774 23.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.118 4.118 3 H 0.127 0.873 4 C -0.007 4.007 5 N -0.334 5.334 6 C 0.363 3.637 7 O -0.458 6.458 8 C -0.148 4.148 9 C -0.109 4.109 10 C -0.128 4.128 11 C -0.105 4.105 12 C -0.009 4.009 13 C 0.035 3.965 14 O -0.234 6.234 15 C -0.065 4.065 16 C -0.055 4.055 17 O -0.227 6.227 18 C -0.044 4.044 19 C 0.054 3.946 20 H 0.101 0.899 21 N -0.362 5.362 22 C -0.364 4.364 23 H 0.102 0.898 24 C -0.265 4.265 25 N -0.620 5.620 26 Si 0.797 3.203 27 H -0.185 1.185 28 H -0.228 1.228 29 H -0.227 1.227 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.152 0.848 36 H 0.187 0.813 37 H 0.186 0.814 38 H 0.095 0.905 39 H 0.167 0.833 40 H 0.179 0.821 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.209 0.791 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 19.925 10.684 6.305 23.471 hybrid contribution -0.726 -0.941 -0.161 1.199 sum 19.199 9.743 6.144 22.389 Atomic orbital electron populations 1.21469 0.93201 1.01430 1.02092 1.22625 0.96926 0.99161 0.93085 0.87330 1.22317 0.82298 0.97816 0.98288 1.48416 1.11677 1.65219 1.08093 1.18043 0.84024 0.76382 0.85238 1.90712 1.84452 1.54710 1.15955 1.19184 0.90917 1.03341 1.01389 1.21388 1.00050 0.95984 0.93432 1.21191 0.89912 1.00649 1.01004 1.20959 1.01225 0.95649 0.92667 1.18899 0.84239 1.00355 0.97453 1.18878 0.92656 0.94572 0.90367 1.86351 1.36725 1.59126 1.41210 1.24038 0.83697 1.04882 0.93899 1.23954 1.02322 0.86292 0.92936 1.86301 1.27306 1.44174 1.64928 1.23241 1.01174 1.01934 0.78075 1.21449 0.88163 0.88848 0.96173 0.89894 1.42619 1.46014 1.33956 1.13640 1.19680 1.17007 1.08408 0.91334 0.89773 1.25478 0.99680 1.00312 1.01012 1.69831 1.28952 1.28155 1.35072 0.85164 0.77015 0.77817 0.80304 1.18487 1.22763 1.22739 0.94269 0.91056 0.92137 0.93357 0.90709 0.84814 0.81305 0.81424 0.90467 0.83329 0.82125 0.89917 0.90433 0.91605 0.79103 0.94324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.82 8.85 71.98 0.64 -3.19 16 2 C -0.10 -3.00 3.53 -9.32 -0.03 -3.04 16 3 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 4 C 0.12 4.01 6.34 86.93 0.55 4.56 16 5 N -0.60 -21.89 3.32 -815.09 -2.71 -24.60 16 6 C 0.57 22.46 7.12 86.70 0.62 23.08 16 7 O -0.58 -26.27 16.71 7.64 0.13 -26.15 16 8 C -0.14 -4.82 5.43 -20.00 -0.11 -4.93 16 9 C -0.09 -2.56 8.52 22.52 0.19 -2.37 16 10 C -0.11 -2.35 10.02 22.21 0.22 -2.13 16 11 C -0.09 -1.76 9.95 22.41 0.22 -1.54 16 12 C 0.04 0.88 6.49 22.53 0.15 1.02 16 13 C 0.08 2.49 6.48 22.90 0.15 2.64 16 14 O -0.32 -9.59 9.34 -69.19 -0.65 -10.24 16 15 C 0.01 0.17 7.26 72.14 0.52 0.69 16 16 C 0.02 0.27 7.26 72.14 0.52 0.79 16 17 O -0.31 -6.41 10.42 -82.96 -0.86 -7.27 16 18 C 0.08 2.73 5.38 86.73 0.47 3.20 16 19 C 0.16 5.84 3.36 46.18 0.15 5.99 16 20 H 0.08 2.78 8.12 -2.39 -0.02 2.76 16 21 N -0.72 -33.27 4.62 -317.35 -1.47 -34.73 16 22 C -0.23 -11.83 9.98 84.03 0.84 -10.99 16 23 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 24 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 25 N -0.97 -57.51 13.06 21.65 0.28 -57.22 16 26 Si 0.97 44.16 29.55 68.60 2.03 46.19 16 27 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 28 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 29 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 30 H 0.04 1.45 6.39 -2.39 -0.02 1.44 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.05 1.89 7.99 -2.39 -0.02 1.87 16 34 H 0.07 2.50 8.08 -2.39 -0.02 2.48 16 35 H 0.13 4.07 5.91 -2.91 -0.02 4.05 16 36 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 37 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.16 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.07 2.45 5.87 -2.39 -0.01 2.43 16 44 H 0.38 19.13 6.11 -92.71 -0.57 18.56 16 45 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -73.56 365.67 2.77 -70.78 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: 0.45 Total: 32.93 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 5.57 Total: 10.31 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -3.89 Total: -116.55 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -1.38 Total: -43.66 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -73.56 2.77 -70.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054719247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.622 kcal (2) G-P(sol) polarization free energy of solvation -73.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds