Wall clock time and date at job start Tue Mar 31 2020 17:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.88290 * 2 1 4 4 C 1.54911 * 111.00283 * 236.11803 * 2 1 3 5 5 N 1.47432 * 104.82598 * 204.87799 * 4 2 1 6 6 C 1.34782 * 125.64377 * 204.09067 * 5 4 2 7 7 O 1.21590 * 119.99763 * 5.29457 * 6 5 4 8 8 C 1.47546 * 119.99771 * 185.28731 * 6 5 4 9 9 C 1.39766 * 120.13763 * 44.55134 * 8 6 5 10 10 C 1.37759 * 119.94609 * 179.74978 * 9 8 6 11 11 C 1.38487 * 120.33149 * 0.57867 * 10 9 8 12 12 C 1.38591 * 120.40916 * 359.49257 * 11 10 9 13 13 C 1.38996 * 119.90512 * 0.11766 * 12 11 10 14 14 O 1.35815 * 120.86950 * 180.36026 * 13 12 11 15 15 C 1.43183 * 116.71848 * 342.54037 * 14 13 12 16 16 C 1.53470 * 108.23211 * 46.27791 * 15 14 13 17 17 O 1.36139 * 119.37858 * 179.88683 * 12 11 10 18 18 C 1.47023 * 108.70627 * 24.35367 * 5 4 2 19 19 C 1.54339 * 107.26351 * 358.58659 * 18 5 4 20 20 H 1.08995 * 111.00122 * 219.59900 * 19 18 5 21 21 N 1.46504 * 110.51476 * 96.45029 * 19 18 5 22 22 C 1.36933 * 120.00003 * 91.49944 * 21 19 18 23 23 H 1.08005 * 119.99952 * 359.97438 * 22 21 19 24 24 C 1.38807 * 120.00157 * 179.97438 * 22 21 19 25 25 N 1.31622 * 120.00383 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 120.00134 * 359.97438 * 24 22 21 27 27 H 1.48507 * 109.46952 * 89.99753 * 26 24 22 28 28 H 1.48495 * 109.47363 * 209.99902 * 26 24 22 29 29 H 1.48500 * 109.46594 * 330.00236 * 26 24 22 30 30 H 1.09006 * 109.46969 * 182.42619 * 1 2 3 31 31 H 1.08997 * 109.47480 * 302.42714 * 1 2 3 32 32 H 1.09007 * 109.47167 * 62.43276 * 1 2 3 33 33 H 1.09000 * 110.36582 * 86.04070 * 4 2 1 34 34 H 1.08993 * 110.46147 * 323.76109 * 4 2 1 35 35 H 1.07995 * 120.02694 * 359.97438 * 9 8 6 36 36 H 1.08000 * 119.82814 * 180.32445 * 10 9 8 37 37 H 1.07996 * 119.79366 * 179.77547 * 11 10 9 38 38 H 1.08996 * 109.70954 * 165.96679 * 15 14 13 39 39 H 1.09000 * 109.70652 * 286.55760 * 15 14 13 40 40 H 1.09005 * 109.70613 * 60.03358 * 16 15 14 41 41 H 1.08996 * 109.70375 * 180.64887 * 16 15 14 42 42 H 1.08995 * 109.87640 * 118.12970 * 18 5 4 43 43 H 1.08998 * 109.88302 * 239.29495 * 18 5 4 44 44 H 0.97002 * 120.00158 * 271.49893 * 21 19 18 45 45 H 0.97002 * 120.00252 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2006 5 7 3.4275 -1.2420 -0.7740 6 6 4.4480 -1.5599 -1.5951 7 8 4.3325 -1.4068 -2.7958 8 6 5.7052 -2.0936 -1.0370 9 6 5.6707 -3.0814 -0.0487 10 6 6.8470 -3.5805 0.4660 11 6 8.0661 -3.1000 0.0178 12 6 8.1169 -2.1196 -0.9605 13 6 6.9384 -1.6122 -1.4949 14 8 6.9655 -0.6564 -2.4595 15 6 8.1929 0.0635 -2.6182 16 6 9.3460 -0.9492 -2.6261 17 8 9.3267 -1.6608 -1.3840 18 6 3.4667 -1.2784 0.6952 19 6 2.0869 -0.8076 1.2020 20 1 2.1899 -0.1704 2.0802 21 7 1.2283 -1.9577 1.4962 22 6 1.2080 -2.4923 2.7567 23 1 1.8252 -2.0664 3.5339 24 6 0.3941 -3.5815 3.0355 25 7 0.3749 -4.0958 4.2470 26 14 -0.6741 -4.3178 1.6915 27 1 0.0838 -5.3807 0.9834 28 1 -1.8982 -4.9018 2.2962 29 1 -1.0568 -3.2561 0.7263 30 1 -0.3633 -1.0268 0.0435 31 1 -0.3634 0.5510 0.8674 32 1 -0.3634 0.4756 -0.9110 33 1 2.1553 -0.1714 -2.0839 34 1 1.4529 -1.6703 -1.4044 35 1 4.7227 -3.4556 0.3084 36 1 6.8182 -4.3475 1.2258 37 1 8.9829 -3.4949 0.4299 38 1 8.1785 0.6117 -3.5601 39 1 8.3203 0.7600 -1.7894 40 1 9.2155 -1.6483 -3.4523 41 1 10.2952 -0.4246 -2.7344 42 1 3.6617 -2.2953 1.0357 43 1 4.2431 -0.6071 1.0621 44 1 0.6742 -2.3404 0.7980 45 1 -0.1942 -4.8567 4.4420 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054719253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:01 Heat of formation + Delta-G solvation = -49.084239 kcal Electronic energy + Delta-G solvation = -29350.746301 eV Core-core repulsion = 25334.901504 eV Total energy + Delta-G solvation = -4015.844797 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.49290 -39.88171 -37.98307 -37.55709 -37.02276 -34.06247 -32.57933 -31.40003 -31.07691 -30.65708 -28.61787 -28.14081 -26.47958 -24.88241 -24.09790 -23.31841 -21.89891 -21.14508 -19.78559 -19.44861 -18.54870 -17.96331 -17.67346 -17.23620 -16.31225 -15.79674 -15.73346 -15.36033 -14.87473 -14.79016 -14.64877 -14.45202 -14.29804 -14.09252 -13.82883 -13.37261 -13.18188 -12.89272 -12.65915 -12.39217 -12.12661 -12.10565 -12.06293 -11.62086 -11.49155 -11.33578 -11.27414 -11.03074 -10.84491 -10.78892 -10.51489 -10.31756 -10.05110 -9.69737 -9.61587 -9.06697 -8.76414 -8.28410 -8.22344 -7.39918 -5.86087 -3.23094 0.85661 1.20050 2.75327 2.92655 3.03450 3.19250 3.30988 3.34621 3.40994 3.67403 3.96737 4.38947 4.50907 4.53200 4.61777 4.71960 4.89795 4.93695 5.04428 5.08293 5.15013 5.15808 5.18643 5.32784 5.34281 5.50576 5.56208 5.65849 5.82459 5.83639 5.92199 5.98206 6.01934 6.10186 6.18087 6.26757 6.32298 6.41610 6.46686 6.56661 6.63385 6.71132 6.73580 7.21060 7.79202 7.89065 8.32637 8.38929 9.09801 9.82284 10.01119 11.31578 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.003609 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.236421 B = 7755.602687 C = 8798.237175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 H 0.083 0.917 4 C 0.114 3.886 5 N -0.606 5.606 6 C 0.579 3.421 7 O -0.535 6.535 8 C -0.120 4.120 9 C -0.078 4.078 10 C -0.119 4.119 11 C -0.094 4.094 12 C 0.036 3.964 13 C 0.097 3.903 14 O -0.286 6.286 15 C 0.017 3.983 16 C 0.021 3.979 17 O -0.307 6.307 18 C 0.068 3.932 19 C 0.178 3.822 20 H 0.082 0.918 21 N -0.736 5.736 22 C -0.250 4.250 23 H 0.093 0.907 24 C 0.011 3.989 25 N -0.929 5.929 26 Si 0.878 3.122 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.276 1.276 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.122 0.878 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.364 0.636 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.677 7.825 -11.448 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.138 4.138 3 H 0.101 0.899 4 C -0.008 4.008 5 N -0.339 5.339 6 C 0.367 3.633 7 O -0.413 6.413 8 C -0.124 4.124 9 C -0.096 4.096 10 C -0.137 4.137 11 C -0.113 4.113 12 C -0.008 4.008 13 C 0.050 3.950 14 O -0.199 6.199 15 C -0.059 4.059 16 C -0.055 4.055 17 O -0.222 6.222 18 C -0.057 4.057 19 C 0.067 3.933 20 H 0.100 0.900 21 N -0.379 5.379 22 C -0.379 4.379 23 H 0.111 0.889 24 C -0.185 4.185 25 N -0.576 5.576 26 Si 0.708 3.292 27 H -0.210 1.210 28 H -0.216 1.216 29 H -0.202 1.202 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.140 0.860 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.139 0.861 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.198 0.802 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.716 7.866 -11.911 21.231 hybrid contribution -0.570 -0.588 -0.946 1.251 sum 15.146 7.278 -12.857 21.159 Atomic orbital electron populations 1.21594 0.93564 1.02921 1.01072 1.22680 0.96793 0.98933 0.95367 0.89865 1.22257 0.82626 0.98279 0.97647 1.48343 1.11764 1.65918 1.07856 1.17565 0.82288 0.77830 0.85579 1.90766 1.81997 1.54067 1.14494 1.19202 0.91068 1.02043 1.00083 1.21396 1.00023 0.94845 0.93374 1.20912 0.90792 1.00962 1.01007 1.20575 0.99324 0.94654 0.96715 1.18724 0.83431 0.98496 1.00169 1.18755 0.92221 0.91828 0.92149 1.86473 1.35098 1.47455 1.50870 1.23689 0.83493 0.93936 1.04779 1.23629 1.00946 0.95160 0.85774 1.86311 1.26620 1.70728 1.38492 1.23387 1.01209 1.02723 0.78384 1.21177 0.87882 0.89142 0.95150 0.89987 1.42812 1.49918 1.34600 1.10536 1.19061 1.21871 1.10251 0.86738 0.88918 1.24641 0.99561 0.98321 0.96009 1.69690 1.42745 1.26292 1.18875 0.86672 0.80936 0.79453 0.82093 1.21016 1.21639 1.20216 0.91740 0.91866 0.93377 0.90916 0.91639 0.83593 0.84120 0.84489 0.85996 0.90419 0.90400 0.86052 0.89806 0.92274 0.80209 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.98 37.16 0.33 -1.62 16 2 C -0.12 -1.74 3.51 -88.47 -0.31 -2.05 16 3 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 4 C 0.11 1.82 6.36 -2.52 -0.02 1.80 16 5 N -0.61 -10.24 3.33 -171.73 -0.57 -10.81 16 6 C 0.58 10.52 7.16 -12.46 -0.09 10.43 16 7 O -0.54 -11.20 16.52 -9.00 -0.15 -11.34 16 8 C -0.12 -1.93 5.40 -104.84 -0.57 -2.50 16 9 C -0.08 -1.11 8.43 -39.19 -0.33 -1.44 16 10 C -0.12 -1.41 10.02 -39.66 -0.40 -1.81 16 11 C -0.09 -1.09 9.95 -39.36 -0.39 -1.49 16 12 C 0.04 0.48 6.49 -39.17 -0.25 0.23 16 13 C 0.10 1.47 6.48 -38.61 -0.25 1.22 16 14 O -0.29 -4.21 9.25 -43.52 -0.40 -4.61 16 15 C 0.02 0.15 7.26 37.40 0.27 0.43 16 16 C 0.02 0.17 7.26 37.40 0.27 0.44 16 17 O -0.31 -3.53 10.42 -33.01 -0.34 -3.88 16 18 C 0.07 1.12 5.64 -3.06 -0.02 1.10 16 19 C 0.18 3.09 3.40 -66.09 -0.22 2.86 16 20 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 21 N -0.74 -15.72 4.25 -51.65 -0.22 -15.94 16 22 C -0.25 -6.44 10.44 -15.06 -0.16 -6.60 16 23 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 24 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 25 N -0.93 -27.76 13.97 55.49 0.78 -26.99 16 26 Si 0.88 21.14 27.73 -169.99 -4.71 16.42 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 30 H 0.06 1.08 6.28 -51.93 -0.33 0.75 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.07 1.13 7.99 -51.93 -0.41 0.71 16 34 H 0.07 1.09 8.04 -51.93 -0.42 0.67 16 35 H 0.15 2.14 6.11 -52.49 -0.32 1.82 16 36 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.08 1.47 5.61 -51.93 -0.29 1.18 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.36 7.84 4.11 -40.82 -0.17 7.67 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -33.35 362.33 -8.57 -41.92 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -6.18 Total: 8.54 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -2.22 Total: 1.22 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.02 Total: -53.73 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.90 Total: -19.83 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.71 Total: 16.42 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.35 -8.57 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054719253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.164 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds