Wall clock time and date at job start Tue Mar 31 2020 17:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.88290 * 2 1 4 4 C 1.54911 * 111.00283 * 236.11803 * 2 1 3 5 5 N 1.47432 * 104.82598 * 204.87799 * 4 2 1 6 6 C 1.34782 * 125.64377 * 204.09067 * 5 4 2 7 7 O 1.21590 * 119.99763 * 5.29457 * 6 5 4 8 8 C 1.47546 * 119.99771 * 185.28731 * 6 5 4 9 9 C 1.39766 * 120.13763 * 44.55134 * 8 6 5 10 10 C 1.37759 * 119.94609 * 179.74978 * 9 8 6 11 11 C 1.38487 * 120.33149 * 0.57867 * 10 9 8 12 12 C 1.38591 * 120.40916 * 359.49257 * 11 10 9 13 13 C 1.38996 * 119.90512 * 0.11766 * 12 11 10 14 14 O 1.35815 * 120.86950 * 180.36026 * 13 12 11 15 15 C 1.43183 * 116.71848 * 342.54037 * 14 13 12 16 16 C 1.53470 * 108.23211 * 46.27791 * 15 14 13 17 17 O 1.36139 * 119.37858 * 179.88683 * 12 11 10 18 18 C 1.47023 * 108.70627 * 24.35367 * 5 4 2 19 19 C 1.54339 * 107.26351 * 358.58659 * 18 5 4 20 20 H 1.08995 * 111.00122 * 219.59900 * 19 18 5 21 21 N 1.46504 * 110.51476 * 96.45029 * 19 18 5 22 22 C 1.36933 * 120.00003 * 91.49944 * 21 19 18 23 23 H 1.08005 * 119.99952 * 359.97438 * 22 21 19 24 24 C 1.38807 * 120.00157 * 179.97438 * 22 21 19 25 25 N 1.31622 * 120.00383 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 120.00134 * 359.97438 * 24 22 21 27 27 H 1.48507 * 109.46952 * 89.99753 * 26 24 22 28 28 H 1.48495 * 109.47363 * 209.99902 * 26 24 22 29 29 H 1.48500 * 109.46594 * 330.00236 * 26 24 22 30 30 H 1.09006 * 109.46969 * 182.42619 * 1 2 3 31 31 H 1.08997 * 109.47480 * 302.42714 * 1 2 3 32 32 H 1.09007 * 109.47167 * 62.43276 * 1 2 3 33 33 H 1.09000 * 110.36582 * 86.04070 * 4 2 1 34 34 H 1.08993 * 110.46147 * 323.76109 * 4 2 1 35 35 H 1.07995 * 120.02694 * 359.97438 * 9 8 6 36 36 H 1.08000 * 119.82814 * 180.32445 * 10 9 8 37 37 H 1.07996 * 119.79366 * 179.77547 * 11 10 9 38 38 H 1.08996 * 109.70954 * 165.96679 * 15 14 13 39 39 H 1.09000 * 109.70652 * 286.55760 * 15 14 13 40 40 H 1.09005 * 109.70613 * 60.03358 * 16 15 14 41 41 H 1.08996 * 109.70375 * 180.64887 * 16 15 14 42 42 H 1.08995 * 109.87640 * 118.12970 * 18 5 4 43 43 H 1.08998 * 109.88302 * 239.29495 * 18 5 4 44 44 H 0.97002 * 120.00158 * 271.49893 * 21 19 18 45 45 H 0.97002 * 120.00252 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2006 5 7 3.4275 -1.2420 -0.7740 6 6 4.4480 -1.5599 -1.5951 7 8 4.3325 -1.4068 -2.7958 8 6 5.7052 -2.0936 -1.0370 9 6 5.6707 -3.0814 -0.0487 10 6 6.8470 -3.5805 0.4660 11 6 8.0661 -3.1000 0.0178 12 6 8.1169 -2.1196 -0.9605 13 6 6.9384 -1.6122 -1.4949 14 8 6.9655 -0.6564 -2.4595 15 6 8.1929 0.0635 -2.6182 16 6 9.3460 -0.9492 -2.6261 17 8 9.3267 -1.6608 -1.3840 18 6 3.4667 -1.2784 0.6952 19 6 2.0869 -0.8076 1.2020 20 1 2.1899 -0.1704 2.0802 21 7 1.2283 -1.9577 1.4962 22 6 1.2080 -2.4923 2.7567 23 1 1.8252 -2.0664 3.5339 24 6 0.3941 -3.5815 3.0355 25 7 0.3749 -4.0958 4.2470 26 14 -0.6741 -4.3178 1.6915 27 1 0.0838 -5.3807 0.9834 28 1 -1.8982 -4.9018 2.2962 29 1 -1.0568 -3.2561 0.7263 30 1 -0.3633 -1.0268 0.0435 31 1 -0.3634 0.5510 0.8674 32 1 -0.3634 0.4756 -0.9110 33 1 2.1553 -0.1714 -2.0839 34 1 1.4529 -1.6703 -1.4044 35 1 4.7227 -3.4556 0.3084 36 1 6.8182 -4.3475 1.2258 37 1 8.9829 -3.4949 0.4299 38 1 8.1785 0.6117 -3.5601 39 1 8.3203 0.7600 -1.7894 40 1 9.2155 -1.6483 -3.4523 41 1 10.2952 -0.4246 -2.7344 42 1 3.6617 -2.2953 1.0357 43 1 4.2431 -0.6071 1.0621 44 1 0.6742 -2.3404 0.7980 45 1 -0.1942 -4.8567 4.4420 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054719253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:00 Heat of formation + Delta-G solvation = -70.310444 kcal Electronic energy + Delta-G solvation = -29351.666739 eV Core-core repulsion = 25334.901504 eV Total energy + Delta-G solvation = -4016.765234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.44601 -41.17550 -39.24443 -38.55530 -38.11550 -35.79708 -34.07922 -32.75068 -32.21530 -31.85123 -29.72129 -29.47770 -27.68554 -25.73430 -25.62942 -24.80852 -23.24797 -22.01127 -20.96380 -20.88338 -19.81025 -19.53926 -18.69390 -18.31643 -17.54137 -17.17243 -16.75186 -16.32249 -16.29101 -15.95000 -15.92172 -15.72489 -15.52801 -15.32041 -14.90380 -14.62233 -14.58310 -14.35212 -13.92467 -13.63627 -13.56187 -13.30200 -13.16539 -13.04702 -12.93283 -12.74570 -12.36465 -12.20022 -12.11872 -12.04744 -11.89555 -11.74327 -11.58293 -11.42971 -11.08484 -10.92636 -9.86970 -9.60966 -9.31469 -9.20185 -7.98267 -5.31109 -0.21073 0.20100 1.39045 1.40810 1.47302 1.58771 1.90850 1.98155 2.20807 2.50080 2.60267 3.13318 3.31925 3.38211 3.55377 3.62311 3.78248 3.84017 3.88661 3.91329 4.01795 4.11983 4.20379 4.26794 4.36829 4.47206 4.53438 4.56471 4.60583 4.62307 4.65111 4.81791 4.91406 4.94773 4.97346 5.03460 5.17713 5.23585 5.28538 5.34214 5.49504 5.53250 5.81922 5.83756 6.25472 6.28277 6.43697 7.02091 7.11000 7.86044 8.04228 9.22633 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.003609 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.236421 B = 7755.602687 C = 8798.237175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 H 0.109 0.891 4 C 0.111 3.889 5 N -0.605 5.605 6 C 0.576 3.424 7 O -0.572 6.572 8 C -0.147 4.147 9 C -0.087 4.087 10 C -0.113 4.113 11 C -0.086 4.086 12 C 0.034 3.966 13 C 0.085 3.915 14 O -0.317 6.317 15 C 0.008 3.992 16 C 0.018 3.982 17 O -0.312 6.312 18 C 0.079 3.921 19 C 0.170 3.830 20 H 0.087 0.913 21 N -0.737 5.737 22 C -0.220 4.220 23 H 0.069 0.931 24 C -0.053 4.053 25 N -0.979 5.979 26 Si 0.935 3.065 27 H -0.286 1.286 28 H -0.299 1.299 29 H -0.251 1.251 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.135 0.865 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.148 0.852 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.162 0.838 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.365 0.635 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.296 9.003 -12.671 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.121 4.121 3 H 0.127 0.873 4 C -0.012 4.012 5 N -0.337 5.337 6 C 0.366 3.634 7 O -0.452 6.452 8 C -0.151 4.151 9 C -0.106 4.106 10 C -0.131 4.131 11 C -0.104 4.104 12 C -0.011 4.011 13 C 0.038 3.962 14 O -0.231 6.231 15 C -0.067 4.067 16 C -0.056 4.056 17 O -0.227 6.227 18 C -0.046 4.046 19 C 0.060 3.940 20 H 0.104 0.896 21 N -0.380 5.380 22 C -0.351 4.351 23 H 0.087 0.913 24 C -0.245 4.245 25 N -0.630 5.630 26 Si 0.764 3.236 27 H -0.213 1.213 28 H -0.226 1.226 29 H -0.176 1.176 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.153 0.847 36 H 0.183 0.817 37 H 0.184 0.816 38 H 0.166 0.834 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.179 0.821 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.199 0.801 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.357 9.101 -13.171 23.612 hybrid contribution -0.903 -0.835 -0.601 1.369 sum 16.454 8.266 -13.772 22.994 Atomic orbital electron populations 1.21571 0.93039 1.01747 1.02533 1.22636 0.97097 0.99457 0.92940 0.87313 1.22343 0.82145 0.98245 0.98426 1.48403 1.11963 1.65476 1.07881 1.17953 0.83034 0.77207 0.85214 1.90724 1.82777 1.55825 1.15901 1.19189 0.90660 1.03588 1.01684 1.21358 1.00557 0.95074 0.93596 1.21185 0.90081 1.00935 1.00891 1.20946 1.00256 0.93595 0.95620 1.18898 0.83475 0.98531 1.00193 1.18898 0.92493 0.92334 0.92477 1.86417 1.38041 1.47763 1.50834 1.24068 0.82141 0.94044 1.06424 1.23943 1.02385 0.94868 0.84449 1.86304 1.25586 1.70917 1.39881 1.23188 1.00854 1.02367 0.78195 1.21400 0.87819 0.88204 0.96611 0.89556 1.42783 1.50671 1.35636 1.08889 1.19037 1.19448 1.08916 0.87711 0.91262 1.25274 1.01812 0.99566 0.97849 1.69843 1.44570 1.27401 1.21153 0.85730 0.78834 0.79071 0.80010 1.21322 1.22633 1.17585 0.93993 0.91711 0.90788 0.90330 0.92513 0.84748 0.81682 0.81585 0.83419 0.89797 0.90394 0.82062 0.91100 0.90637 0.80096 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 8.98 71.98 0.65 -2.86 16 2 C -0.10 -2.78 3.51 -9.40 -0.03 -2.82 16 3 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 4 C 0.11 3.39 6.36 86.85 0.55 3.94 16 5 N -0.61 -20.20 3.33 -815.48 -2.71 -22.91 16 6 C 0.58 21.13 7.16 86.70 0.62 21.75 16 7 O -0.57 -24.32 16.52 9.66 0.16 -24.16 16 8 C -0.15 -4.76 5.40 -20.01 -0.11 -4.87 16 9 C -0.09 -2.47 8.43 22.53 0.19 -2.28 16 10 C -0.11 -2.52 10.02 22.22 0.22 -2.29 16 11 C -0.09 -1.80 9.95 22.41 0.22 -1.58 16 12 C 0.03 0.84 6.49 22.54 0.15 0.99 16 13 C 0.08 2.52 6.48 22.90 0.15 2.67 16 14 O -0.32 -9.20 9.25 -68.18 -0.63 -9.83 16 15 C 0.01 0.13 7.26 72.14 0.52 0.65 16 16 C 0.02 0.25 7.26 72.14 0.52 0.77 16 17 O -0.31 -6.43 10.42 -82.86 -0.86 -7.29 16 18 C 0.08 2.53 5.64 86.73 0.49 3.02 16 19 C 0.17 5.67 3.40 46.18 0.16 5.82 16 20 H 0.09 2.85 8.09 -2.39 -0.02 2.84 16 21 N -0.74 -30.95 4.25 -317.31 -1.35 -32.30 16 22 C -0.22 -11.43 10.44 84.03 0.88 -10.55 16 23 H 0.07 3.89 8.06 -2.91 -0.02 3.86 16 24 C -0.05 -2.96 5.50 84.86 0.47 -2.49 16 25 N -0.98 -60.00 13.97 21.65 0.30 -59.70 16 26 Si 0.93 43.94 27.73 68.60 1.90 45.84 16 27 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 28 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 29 H -0.25 -10.62 6.52 99.48 0.65 -9.98 16 30 H 0.04 1.31 6.28 -2.38 -0.01 1.30 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.08 2.33 7.99 -2.39 -0.02 2.31 16 34 H 0.06 1.84 8.04 -2.39 -0.02 1.82 16 35 H 0.13 4.03 6.11 -2.91 -0.02 4.01 16 36 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 37 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.15 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.16 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 2.49 5.61 -2.39 -0.01 2.48 16 43 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.36 15.31 4.11 -92.71 -0.38 14.93 16 45 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -74.16 362.33 3.04 -71.12 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: 0.58 Total: 29.34 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 5.65 Total: 9.88 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -3.76 Total: -114.91 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -1.33 Total: -41.28 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.90 Total: 45.84 kcal Total: -74.16 3.04 -71.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054719253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.814 kcal (2) G-P(sol) polarization free energy of solvation -74.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds