Wall clock time and date at job start Tue Mar 31 2020 17:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 110.00377 * 2 1 4 4 C 1.54327 * 109.88268 * 121.09483 * 2 1 3 5 5 H 1.08998 * 110.72335 * 259.97263 * 4 2 1 6 6 N 1.46504 * 110.72009 * 23.24714 * 4 2 1 7 7 C 1.36932 * 119.99954 * 205.00099 * 6 4 2 8 8 H 1.08000 * 120.00129 * 359.97438 * 7 6 4 9 9 C 1.38810 * 120.00035 * 179.97438 * 7 6 4 10 10 N 1.31620 * 119.99793 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00290 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46813 * 60.00029 * 11 9 7 13 13 H 1.48494 * 109.47065 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46614 * 300.00197 * 11 9 7 15 15 C 1.55158 * 102.94152 * 141.60831 * 4 2 1 16 16 C 1.55129 * 101.48750 * 324.33164 * 15 4 2 17 17 N 1.47020 * 109.88241 * 238.90088 * 2 1 3 18 18 C 1.34784 * 125.64782 * 61.60802 * 17 2 1 19 19 O 1.21274 * 119.99596 * 354.75144 * 18 17 2 20 20 C 1.50703 * 120.00057 * 175.02129 * 18 17 2 21 21 H 1.09004 * 109.70080 * 48.48196 * 20 18 17 22 22 C 1.53464 * 109.71178 * 287.89888 * 20 18 17 23 23 O 1.43174 * 108.23927 * 180.57882 * 22 20 18 24 24 C 1.36102 * 116.70505 * 46.23240 * 23 22 20 25 25 C 1.38708 * 119.39930 * 162.74149 * 24 23 22 26 26 C 1.38192 * 120.06629 * 179.88559 * 25 24 23 27 27 C 1.38256 * 120.11581 * 359.94580 * 26 25 24 28 28 C 1.38201 * 120.11171 * 0.05397 * 27 26 25 29 29 C 1.38704 * 120.06201 * 0.09066 * 28 27 26 30 30 O 1.36109 * 119.39353 * 179.62810 * 29 28 27 31 31 H 1.08995 * 109.47416 * 179.64354 * 1 2 3 32 32 H 1.09006 * 109.47009 * 299.65027 * 1 2 3 33 33 H 1.09003 * 109.47221 * 59.64004 * 1 2 3 34 34 H 0.97003 * 119.99844 * 24.99553 * 6 4 2 35 35 H 0.97008 * 119.99830 * 179.97438 * 10 9 7 36 36 H 1.08996 * 111.00810 * 82.57698 * 15 4 2 37 37 H 1.09003 * 111.00072 * 206.42592 * 15 4 2 38 38 H 1.09000 * 110.49989 * 278.45898 * 16 15 4 39 39 H 1.08999 * 110.34134 * 156.05722 * 16 15 4 40 40 H 1.09008 * 109.70945 * 300.26372 * 22 20 18 41 41 H 1.08996 * 109.71106 * 60.89054 * 22 20 18 42 42 H 1.07992 * 119.96599 * 359.87006 * 25 24 23 43 43 H 1.08001 * 119.94483 * 179.97438 * 26 25 24 44 44 H 1.08000 * 119.94803 * 180.02562 * 27 26 25 45 45 H 1.08000 * 119.96912 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2428 5 1 2.3529 -0.0460 2.0201 6 7 1.0471 -1.6855 1.7475 7 6 1.0606 -2.0617 3.0641 8 1 1.8143 -1.6687 3.7303 9 6 0.1055 -2.9481 3.5424 10 7 -0.8128 -3.4275 2.7304 11 14 0.1234 -3.4608 5.3386 12 1 -0.0391 -2.2604 6.1976 13 1 -0.9916 -4.4077 5.5943 14 1 1.4156 -4.1223 5.6517 15 6 3.2875 -1.5143 0.6924 16 6 2.8098 -1.8826 -0.7368 17 7 2.0299 -0.7141 -1.1839 18 6 1.8073 -0.3621 -2.4657 19 8 1.0661 0.5633 -2.7204 20 6 2.4747 -1.1224 -3.5827 21 1 2.3437 -2.1934 -3.4278 22 6 3.9711 -0.7838 -3.6174 23 8 4.5702 -1.5107 -4.6957 24 6 3.9143 -1.4872 -5.8880 25 6 4.5902 -1.8486 -7.0442 26 6 3.9370 -1.8320 -8.2619 27 6 2.6083 -1.4563 -8.3313 28 6 1.9290 -1.0951 -7.1832 29 6 2.5796 -1.1068 -5.9582 30 8 1.8997 -0.7412 -4.8372 31 1 -0.3634 -1.0276 -0.0064 32 1 -0.3633 0.5084 0.8932 33 1 -0.3634 0.5194 -0.8868 34 1 0.3703 -2.0387 1.1490 35 1 -1.4800 -4.0473 3.0646 36 1 4.1654 -0.8690 0.6604 37 1 3.4850 -2.4111 1.2797 38 1 2.1799 -2.7718 -0.7114 39 1 3.6654 -2.0413 -1.3932 40 1 4.1023 0.2864 -3.7779 41 1 4.4358 -1.0745 -2.6753 42 1 5.6279 -2.1430 -6.9926 43 1 4.4653 -2.1133 -9.1609 44 1 2.1004 -1.4447 -9.2843 45 1 0.8910 -0.8024 -7.2400 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075085408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:47 Heat of formation + Delta-G solvation = -47.119087 kcal Electronic energy + Delta-G solvation = -28960.124386 eV Core-core repulsion = 24944.364804 eV Total energy + Delta-G solvation = -4015.759582 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.67860 -40.02477 -38.07937 -37.68110 -37.05994 -34.16366 -32.37623 -31.17579 -30.90131 -30.79726 -29.21388 -28.36334 -25.61249 -25.28401 -23.66326 -23.13851 -22.73734 -21.35313 -20.00634 -19.01671 -18.86207 -17.94100 -17.48908 -17.19708 -16.50701 -16.12952 -15.68362 -15.44802 -14.94252 -14.84731 -14.51100 -14.40015 -14.12114 -13.93354 -13.89821 -13.72405 -13.32401 -12.87451 -12.69310 -12.42275 -12.31923 -12.16784 -11.84650 -11.59436 -11.47935 -11.28545 -11.08146 -11.01339 -10.83641 -10.75236 -10.71651 -10.33209 -10.14700 -9.71322 -9.61438 -9.02339 -8.91025 -8.52103 -8.32355 -7.10711 -5.87685 -3.18044 1.03825 1.05225 2.27842 2.50761 2.80705 3.35950 3.37350 3.42452 3.43540 3.49081 3.92502 4.24704 4.34735 4.48071 4.49268 4.70420 4.75512 4.92897 4.99755 5.08362 5.11783 5.15323 5.19034 5.33506 5.46516 5.54231 5.57755 5.63778 5.71206 5.87173 5.89528 5.92664 5.97753 6.20338 6.22226 6.33289 6.35812 6.41675 6.52717 6.58322 6.64538 6.77287 6.95951 7.14568 7.56568 7.60008 8.12220 8.30163 9.41928 9.95861 10.30648 11.34229 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024552 B = 0.002577 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.148752 B =10861.238148 C =11021.822822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.129 3.871 3 H 0.074 0.926 4 C 0.172 3.828 5 H 0.073 0.927 6 N -0.713 5.713 7 C -0.247 4.247 8 H 0.072 0.928 9 C -0.008 4.008 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.286 1.286 15 C -0.159 4.159 16 C 0.095 3.905 17 N -0.603 5.603 18 C 0.538 3.462 19 O -0.514 6.514 20 C 0.038 3.962 21 H 0.109 0.891 22 C 0.034 3.966 23 O -0.301 6.301 24 C 0.045 3.955 25 C -0.113 4.113 26 C -0.119 4.119 27 C -0.115 4.115 28 C -0.112 4.112 29 C 0.055 3.945 30 O -0.279 6.279 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.388 0.612 35 H 0.257 0.743 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.705 3.643 -18.526 22.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.026 3.974 3 H 0.092 0.908 4 C 0.060 3.940 5 H 0.091 0.909 6 N -0.355 5.355 7 C -0.378 4.378 8 H 0.090 0.910 9 C -0.205 4.205 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.200 4.200 16 C -0.027 4.027 17 N -0.338 5.338 18 C 0.323 3.677 19 O -0.389 6.389 20 C -0.022 4.022 21 H 0.126 0.874 22 C -0.042 4.042 23 O -0.215 6.215 24 C 0.000 4.000 25 C -0.131 4.131 26 C -0.138 4.138 27 C -0.133 4.133 28 C -0.130 4.130 29 C 0.010 3.990 30 O -0.192 6.192 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.225 0.775 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 11.258 4.138 -18.472 22.025 hybrid contribution -0.248 -0.632 0.979 1.191 sum 11.011 3.506 -17.494 20.965 Atomic orbital electron populations 1.21950 0.93943 1.03172 1.01878 1.22110 0.95750 0.95537 0.84032 0.90843 1.21200 0.89084 0.91717 0.91992 0.90892 1.42556 1.32643 1.51329 1.08971 1.19180 1.10971 1.21542 0.86119 0.91022 1.24757 0.97812 0.99975 0.97950 1.69650 1.18318 1.35363 1.34373 0.86261 0.76995 0.78080 0.84762 1.21189 1.21719 1.21222 1.23579 0.99378 1.02610 0.94471 1.22574 0.94560 0.88788 0.96807 1.48552 1.52365 1.28659 1.04249 1.19086 0.82360 0.84394 0.81870 1.90729 1.35863 1.29655 1.82667 1.22903 0.94152 1.00929 0.84218 0.87378 1.23612 0.91602 0.97856 0.91094 1.86337 1.48211 1.69777 1.17168 1.18978 0.90044 1.04029 0.86916 1.20443 1.00402 1.02825 0.89454 1.20919 0.94867 1.01037 0.96932 1.20933 0.94653 1.00009 0.97744 1.20496 1.00767 1.02340 0.89440 1.19047 0.89784 1.02196 0.87968 1.86408 1.47025 1.74656 1.11123 0.91458 0.91299 0.92506 0.77494 0.93290 0.91775 0.89128 0.90404 0.91690 0.89720 0.85104 0.84755 0.85061 0.84995 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.50 37.15 0.32 -2.49 16 2 C 0.13 2.13 3.46 -66.96 -0.23 1.90 16 3 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.17 3.04 3.48 -66.09 -0.23 2.81 16 5 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 6 N -0.71 -16.11 4.54 -51.65 -0.23 -16.34 16 7 C -0.25 -6.31 9.96 -15.06 -0.15 -6.46 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 10 N -0.93 -26.78 13.06 55.49 0.72 -26.05 16 11 Si 0.91 21.37 29.55 -169.99 -5.02 16.35 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 15 C -0.16 -2.30 6.78 -24.46 -0.17 -2.47 16 16 C 0.09 1.28 6.49 -2.41 -0.02 1.26 16 17 N -0.60 -9.12 3.06 -162.88 -0.50 -9.62 16 18 C 0.54 8.59 7.00 -10.98 -0.08 8.52 16 19 O -0.51 -10.04 15.41 -13.95 -0.22 -10.26 16 20 C 0.04 0.52 2.71 -27.64 -0.07 0.45 16 21 H 0.11 1.35 7.91 -51.93 -0.41 0.94 16 22 C 0.03 0.38 6.38 37.40 0.24 0.62 16 23 O -0.30 -3.62 10.42 -32.86 -0.34 -3.97 16 24 C 0.05 0.55 6.49 -39.14 -0.25 0.30 16 25 C -0.11 -1.10 9.96 -39.42 -0.39 -1.50 16 26 C -0.12 -0.98 10.04 -39.59 -0.40 -1.38 16 27 C -0.12 -0.99 10.04 -39.59 -0.40 -1.39 16 28 C -0.11 -1.23 9.96 -39.42 -0.39 -1.63 16 29 C 0.06 0.73 6.49 -39.14 -0.25 0.48 16 30 O -0.28 -4.25 9.64 -46.96 -0.45 -4.70 16 31 H 0.07 1.39 6.20 -51.93 -0.32 1.07 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 1.07 6.72 -51.93 -0.35 0.72 16 34 H 0.39 9.54 5.67 -40.82 -0.23 9.31 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.06 0.67 5.52 -51.93 -0.29 0.38 16 40 H 0.08 0.95 8.14 -51.92 -0.42 0.52 16 41 H 0.13 1.17 6.01 -51.93 -0.31 0.86 16 42 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 363.61 15.07 5.48 5.48 Total: -1.00 -31.34 363.61 -9.24 -40.59 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.11 Total: 9.83 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.57 Total: -1.30 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.01 Total: -52.01 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -1.01 Total: -18.93 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.34 -9.24 -40.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075085408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.533 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds