Wall clock time and date at job start Tue Mar 31 2020 17:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 110.00377 * 2 1 4 4 C 1.54327 * 109.88268 * 121.09483 * 2 1 3 5 5 H 1.08998 * 110.72335 * 259.97263 * 4 2 1 6 6 N 1.46504 * 110.72009 * 23.24714 * 4 2 1 7 7 C 1.36932 * 119.99954 * 205.00099 * 6 4 2 8 8 H 1.08000 * 120.00129 * 359.97438 * 7 6 4 9 9 C 1.38810 * 120.00035 * 179.97438 * 7 6 4 10 10 N 1.31620 * 119.99793 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00290 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46813 * 60.00029 * 11 9 7 13 13 H 1.48494 * 109.47065 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46614 * 300.00197 * 11 9 7 15 15 C 1.55158 * 102.94152 * 141.60831 * 4 2 1 16 16 C 1.55129 * 101.48750 * 324.33164 * 15 4 2 17 17 N 1.47020 * 109.88241 * 238.90088 * 2 1 3 18 18 C 1.34784 * 125.64782 * 61.60802 * 17 2 1 19 19 O 1.21274 * 119.99596 * 354.75144 * 18 17 2 20 20 C 1.50703 * 120.00057 * 175.02129 * 18 17 2 21 21 H 1.09004 * 109.70080 * 48.48196 * 20 18 17 22 22 C 1.53464 * 109.71178 * 287.89888 * 20 18 17 23 23 O 1.43174 * 108.23927 * 180.57882 * 22 20 18 24 24 C 1.36102 * 116.70505 * 46.23240 * 23 22 20 25 25 C 1.38708 * 119.39930 * 162.74149 * 24 23 22 26 26 C 1.38192 * 120.06629 * 179.88559 * 25 24 23 27 27 C 1.38256 * 120.11581 * 359.94580 * 26 25 24 28 28 C 1.38201 * 120.11171 * 0.05397 * 27 26 25 29 29 C 1.38704 * 120.06201 * 0.09066 * 28 27 26 30 30 O 1.36109 * 119.39353 * 179.62810 * 29 28 27 31 31 H 1.08995 * 109.47416 * 179.64354 * 1 2 3 32 32 H 1.09006 * 109.47009 * 299.65027 * 1 2 3 33 33 H 1.09003 * 109.47221 * 59.64004 * 1 2 3 34 34 H 0.97003 * 119.99844 * 24.99553 * 6 4 2 35 35 H 0.97008 * 119.99830 * 179.97438 * 10 9 7 36 36 H 1.08996 * 111.00810 * 82.57698 * 15 4 2 37 37 H 1.09003 * 111.00072 * 206.42592 * 15 4 2 38 38 H 1.09000 * 110.49989 * 278.45898 * 16 15 4 39 39 H 1.08999 * 110.34134 * 156.05722 * 16 15 4 40 40 H 1.09008 * 109.70945 * 300.26372 * 22 20 18 41 41 H 1.08996 * 109.71106 * 60.89054 * 22 20 18 42 42 H 1.07992 * 119.96599 * 359.87006 * 25 24 23 43 43 H 1.08001 * 119.94483 * 179.97438 * 26 25 24 44 44 H 1.08000 * 119.94803 * 180.02562 * 27 26 25 45 45 H 1.08000 * 119.96912 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2428 5 1 2.3529 -0.0460 2.0201 6 7 1.0471 -1.6855 1.7475 7 6 1.0606 -2.0617 3.0641 8 1 1.8143 -1.6687 3.7303 9 6 0.1055 -2.9481 3.5424 10 7 -0.8128 -3.4275 2.7304 11 14 0.1234 -3.4608 5.3386 12 1 -0.0391 -2.2604 6.1976 13 1 -0.9916 -4.4077 5.5943 14 1 1.4156 -4.1223 5.6517 15 6 3.2875 -1.5143 0.6924 16 6 2.8098 -1.8826 -0.7368 17 7 2.0299 -0.7141 -1.1839 18 6 1.8073 -0.3621 -2.4657 19 8 1.0661 0.5633 -2.7204 20 6 2.4747 -1.1224 -3.5827 21 1 2.3437 -2.1934 -3.4278 22 6 3.9711 -0.7838 -3.6174 23 8 4.5702 -1.5107 -4.6957 24 6 3.9143 -1.4872 -5.8880 25 6 4.5902 -1.8486 -7.0442 26 6 3.9370 -1.8320 -8.2619 27 6 2.6083 -1.4563 -8.3313 28 6 1.9290 -1.0951 -7.1832 29 6 2.5796 -1.1068 -5.9582 30 8 1.8997 -0.7412 -4.8372 31 1 -0.3634 -1.0276 -0.0064 32 1 -0.3633 0.5084 0.8932 33 1 -0.3634 0.5194 -0.8868 34 1 0.3703 -2.0387 1.1490 35 1 -1.4800 -4.0473 3.0646 36 1 4.1654 -0.8690 0.6604 37 1 3.4850 -2.4111 1.2797 38 1 2.1799 -2.7718 -0.7114 39 1 3.6654 -2.0413 -1.3932 40 1 4.1023 0.2864 -3.7779 41 1 4.4358 -1.0745 -2.6753 42 1 5.6279 -2.1430 -6.9926 43 1 4.4653 -2.1133 -9.1609 44 1 2.1004 -1.4447 -9.2843 45 1 0.8910 -0.8024 -7.2400 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075085408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:46 Heat of formation + Delta-G solvation = -65.931317 kcal Electronic energy + Delta-G solvation = -28960.940145 eV Core-core repulsion = 24944.364804 eV Total energy + Delta-G solvation = -4016.575341 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.62291 -41.25399 -39.21124 -38.55639 -38.18186 -35.83718 -33.81668 -32.56751 -32.05948 -31.66152 -30.60382 -29.44250 -26.88176 -26.44523 -25.49520 -24.11357 -23.74369 -22.32230 -21.23440 -20.23381 -19.87384 -19.41871 -18.82787 -18.21533 -17.65589 -17.33071 -16.74184 -16.55242 -16.21598 -15.89825 -15.74016 -15.56936 -15.33198 -15.22483 -14.96080 -14.81358 -14.66157 -14.30412 -14.00228 -13.85086 -13.30329 -13.24927 -12.97183 -12.86848 -12.81777 -12.59110 -12.44329 -12.40723 -12.24944 -12.17254 -12.10628 -11.71068 -11.65482 -11.46110 -10.94281 -10.90487 -9.82445 -9.68402 -9.15923 -8.99635 -7.91533 -5.19731 0.26977 0.27847 1.12315 1.34505 1.50835 1.52351 1.58171 1.94137 2.33600 2.58362 2.71570 2.97496 3.13177 3.40575 3.50739 3.53703 3.67182 3.80280 3.90665 3.99069 4.10848 4.14854 4.24629 4.25356 4.31452 4.36702 4.41350 4.51162 4.53801 4.66817 4.78601 4.83238 4.90582 5.03980 5.14614 5.18689 5.21078 5.28410 5.34070 5.42933 5.49843 5.58163 5.67703 5.77796 6.27399 6.29580 6.32587 6.85598 7.37178 8.11014 8.33669 9.31547 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024552 B = 0.002577 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.148752 B =10861.238148 C =11021.822822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.133 3.867 3 H 0.091 0.909 4 C 0.163 3.837 5 H 0.081 0.919 6 N -0.725 5.725 7 C -0.233 4.233 8 H 0.083 0.917 9 C -0.074 4.074 10 N -0.971 5.971 11 Si 0.969 3.031 12 H -0.280 1.280 13 H -0.304 1.304 14 H -0.276 1.276 15 C -0.144 4.144 16 C 0.096 3.904 17 N -0.598 5.598 18 C 0.538 3.462 19 O -0.556 6.556 20 C 0.042 3.958 21 H 0.116 0.884 22 C 0.041 3.959 23 O -0.304 6.304 24 C 0.025 3.975 25 C -0.116 4.116 26 C -0.109 4.109 27 C -0.109 4.109 28 C -0.128 4.128 29 C 0.022 3.978 30 O -0.309 6.309 31 H 0.039 0.961 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.375 0.625 35 H 0.248 0.752 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.158 0.842 42 H 0.154 0.846 43 H 0.168 0.832 44 H 0.163 0.837 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.854 3.634 -19.902 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.030 3.970 3 H 0.109 0.891 4 C 0.053 3.947 5 H 0.099 0.901 6 N -0.367 5.367 7 C -0.365 4.365 8 H 0.101 0.899 9 C -0.267 4.267 10 N -0.621 5.621 11 Si 0.799 3.201 12 H -0.207 1.207 13 H -0.231 1.231 14 H -0.202 1.202 15 C -0.185 4.185 16 C -0.025 4.025 17 N -0.332 5.332 18 C 0.325 3.675 19 O -0.434 6.434 20 C -0.019 4.019 21 H 0.133 0.867 22 C -0.034 4.034 23 O -0.218 6.218 24 C -0.020 4.020 25 C -0.135 4.135 26 C -0.127 4.127 27 C -0.127 4.127 28 C -0.147 4.147 29 C -0.022 4.022 30 O -0.224 6.224 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.210 0.790 35 H 0.057 0.943 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.124 0.876 40 H 0.100 0.900 41 H 0.175 0.825 42 H 0.172 0.828 43 H 0.186 0.814 44 H 0.181 0.819 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 14.484 4.147 -19.852 24.922 hybrid contribution -1.195 -0.558 1.253 1.819 sum 13.289 3.588 -18.599 23.139 Atomic orbital electron populations 1.21794 0.95878 1.01042 1.01088 1.21981 0.94100 0.96503 0.84434 0.89126 1.21452 0.89266 0.91425 0.92544 0.90117 1.42702 1.33735 1.52181 1.08033 1.19600 1.09850 1.19675 0.87374 0.89895 1.25490 0.98354 1.01332 1.01485 1.69817 1.19541 1.36853 1.35929 0.85278 0.76682 0.77448 0.80716 1.20660 1.23064 1.20206 1.23430 0.98845 1.02135 0.94101 1.22656 0.95275 0.87241 0.97316 1.48527 1.52113 1.28784 1.03781 1.19537 0.81673 0.83867 0.82409 1.90704 1.37764 1.31656 1.83321 1.22870 0.95363 1.00568 0.83050 0.86653 1.23663 0.89855 0.97854 0.92061 1.86319 1.48148 1.70013 1.17333 1.19277 0.89949 1.05067 0.87675 1.20831 1.01366 1.02088 0.89192 1.21395 0.94641 0.99000 0.97643 1.21339 0.95011 0.98316 0.98000 1.20765 1.01157 1.02965 0.89815 1.19398 0.90681 1.04296 0.87839 1.86344 1.48376 1.75554 1.12093 0.94153 0.92018 0.93251 0.78996 0.94308 0.88017 0.90322 0.92361 0.87564 0.89976 0.82506 0.82830 0.81433 0.81938 0.84718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.36 8.50 71.98 0.61 -4.75 16 2 C 0.13 4.33 3.46 45.34 0.16 4.48 16 3 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 4 C 0.16 5.54 3.48 46.18 0.16 5.70 16 5 H 0.08 2.64 8.09 -2.39 -0.02 2.62 16 6 N -0.73 -32.98 4.54 -317.32 -1.44 -34.42 16 7 C -0.23 -11.86 9.96 84.03 0.84 -11.02 16 8 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 9 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 10 N -0.97 -57.70 13.06 21.65 0.28 -57.42 16 11 Si 0.97 44.38 29.55 68.60 2.03 46.41 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 13 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 14 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 15 C -0.14 -3.80 6.78 32.06 0.22 -3.58 16 16 C 0.10 2.41 6.49 86.93 0.56 2.98 16 17 N -0.60 -17.56 3.06 -787.62 -2.41 -19.97 16 18 C 0.54 17.19 7.00 87.66 0.61 17.80 16 19 O -0.56 -22.32 15.41 15.65 0.24 -22.08 16 20 C 0.04 1.11 2.71 30.00 0.08 1.19 16 21 H 0.12 2.83 7.91 -2.38 -0.02 2.81 16 22 C 0.04 0.85 6.38 72.14 0.46 1.31 16 23 O -0.30 -6.78 10.42 -82.48 -0.86 -7.64 16 24 C 0.02 0.58 6.49 22.56 0.15 0.72 16 25 C -0.12 -1.97 9.96 22.37 0.22 -1.75 16 26 C -0.11 -1.40 10.04 22.26 0.22 -1.18 16 27 C -0.11 -1.59 10.04 22.27 0.22 -1.37 16 28 C -0.13 -2.77 9.96 22.37 0.22 -2.55 16 29 C 0.02 0.59 6.49 22.56 0.15 0.73 16 30 O -0.31 -9.68 9.64 -69.09 -0.67 -10.35 16 31 H 0.04 1.75 6.20 -2.39 -0.01 1.74 16 32 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.05 1.94 6.72 -2.39 -0.02 1.92 16 34 H 0.38 19.05 5.67 -92.71 -0.53 18.53 16 35 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 36 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.11 1.81 5.52 -2.39 -0.01 1.80 16 40 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.16 2.26 6.01 -2.39 -0.01 2.24 16 42 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 43 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 44 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 45 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -71.13 363.61 3.02 -68.11 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: 0.49 Total: 32.23 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 5.36 Total: 5.13 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -3.57 Total: -111.81 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -1.28 Total: -40.06 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -71.13 3.02 -68.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075085408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.175 kcal (2) G-P(sol) polarization free energy of solvation -71.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds