Wall clock time and date at job start Tue Mar 31 2020 17:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.99466 * 2 1 4 4 C 1.54323 * 109.88341 * 121.09934 * 2 1 3 5 5 H 1.09009 * 110.71794 * 215.58742 * 4 2 1 6 6 N 1.46500 * 110.72114 * 338.85970 * 4 2 1 7 7 C 1.36932 * 119.99902 * 205.00459 * 6 4 2 8 8 H 1.07995 * 120.00627 * 359.97438 * 7 6 4 9 9 C 1.38817 * 120.00070 * 179.97438 * 7 6 4 10 10 N 1.31620 * 120.00386 * 179.97438 * 9 7 6 11 11 Si 1.86809 * 119.99735 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46989 * 89.99819 * 11 9 7 13 13 H 1.48499 * 109.46673 * 209.99834 * 11 9 7 14 14 H 1.48500 * 109.46668 * 330.00006 * 11 9 7 15 15 C 1.55151 * 102.94389 * 97.22454 * 4 2 1 16 16 C 1.54912 * 101.58315 * 35.50169 * 15 4 2 17 17 N 1.47026 * 109.88358 * 238.90696 * 2 1 3 18 18 C 1.34776 * 125.64588 * 59.48241 * 17 2 1 19 19 O 1.21287 * 120.00290 * 355.43904 * 18 17 2 20 20 C 1.50699 * 119.99735 * 175.43649 * 18 17 2 21 21 H 1.08995 * 109.70626 * 315.93803 * 20 18 17 22 22 C 1.53467 * 109.70919 * 76.52200 * 20 18 17 23 23 O 1.43176 * 108.24101 * 179.41978 * 22 20 18 24 24 C 1.36112 * 116.70413 * 313.76859 * 23 22 20 25 25 C 1.38708 * 119.39617 * 197.26051 * 24 23 22 26 26 C 1.38195 * 120.06168 * 180.11219 * 25 24 23 27 27 C 1.38247 * 120.11668 * 0.05170 * 26 25 24 28 28 C 1.38195 * 120.11433 * 359.90268 * 27 26 25 29 29 C 1.38712 * 120.06538 * 359.97438 * 28 27 26 30 30 O 1.36101 * 119.39727 * 180.32627 * 29 28 27 31 31 H 1.09001 * 109.47090 * 179.64342 * 1 2 3 32 32 H 1.09001 * 109.47470 * 299.63747 * 1 2 3 33 33 H 1.08994 * 109.47393 * 59.64001 * 1 2 3 34 34 H 0.97003 * 119.99909 * 24.99925 * 6 4 2 35 35 H 0.96998 * 120.00054 * 179.97438 * 10 9 7 36 36 H 1.08996 * 111.00610 * 277.42631 * 15 4 2 37 37 H 1.09006 * 111.03599 * 153.58859 * 15 4 2 38 38 H 1.08997 * 110.36988 * 204.15148 * 16 15 4 39 39 H 1.09001 * 110.36964 * 81.82794 * 16 15 4 40 40 H 1.08999 * 109.71066 * 299.10539 * 22 20 18 41 41 H 1.09005 * 109.71099 * 59.68836 * 22 20 18 42 42 H 1.07997 * 119.96579 * 0.12854 * 25 24 23 43 43 H 1.08004 * 119.94185 * 180.02562 * 26 25 24 44 44 H 1.08006 * 119.94540 * 179.97438 * 27 26 25 45 45 H 1.07998 * 119.97180 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7496 1.2426 5 1 2.9657 -0.2832 1.6182 6 7 1.0293 -0.8027 2.2875 7 6 1.3954 -0.9389 3.5999 8 1 2.4401 -1.0075 3.8648 9 6 0.4237 -0.9887 4.5900 10 7 0.7756 -1.1200 5.8515 11 14 -1.3834 -0.8693 4.1320 12 1 -1.9216 -2.2305 3.8821 13 1 -2.1353 -0.2362 5.2451 14 1 -1.5295 -0.0462 2.9046 15 6 2.3519 -2.1695 0.6923 16 6 2.8568 -1.8498 -0.7369 17 7 2.0300 -0.7140 -1.1840 18 6 1.7742 -0.3852 -2.4657 19 8 1.0106 0.5227 -2.7181 20 6 2.4369 -1.1456 -3.5853 21 1 3.4921 -1.2928 -3.3555 22 6 1.7512 -2.5070 -3.7632 23 8 2.3950 -3.1957 -4.8408 24 6 2.6246 -2.4786 -5.9746 25 6 2.9024 -3.1465 -7.1581 26 6 3.1400 -2.4320 -8.3169 27 6 3.1025 -1.0501 -8.2998 28 6 2.8254 -0.3785 -7.1243 29 6 2.5835 -1.0896 -5.9581 30 8 2.3054 -0.4145 -4.8095 31 1 -0.3633 -1.0277 -0.0064 32 1 -0.3634 0.5082 0.8932 33 1 -0.3634 0.5194 -0.8867 34 1 0.0909 -0.7414 2.0496 35 1 0.0966 -1.1545 6.5433 36 1 1.4452 -2.7737 0.6603 37 1 3.1269 -2.6624 1.2793 38 1 2.7088 -2.7079 -1.3924 39 1 3.9091 -1.5666 -0.7130 40 1 1.8459 -3.0889 -2.8464 41 1 0.6969 -2.3598 -3.9978 42 1 2.9328 -4.2259 -7.1740 43 1 3.3557 -2.9540 -9.2375 44 1 3.2890 -0.4945 -9.2070 45 1 2.7964 0.7010 -7.1136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075085411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:51 Heat of formation + Delta-G solvation = -41.519946 kcal Electronic energy + Delta-G solvation = -28848.710507 eV Core-core repulsion = 24833.193723 eV Total energy + Delta-G solvation = -4015.516785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.79018 -40.20029 -38.21762 -37.78260 -37.20618 -34.53575 -32.45498 -31.39747 -30.99045 -30.94585 -29.63968 -28.60063 -25.79183 -25.50617 -23.51669 -23.10479 -22.78936 -21.53401 -20.06380 -19.06115 -19.03690 -18.21333 -17.94661 -17.33562 -16.67736 -16.11903 -15.78509 -15.59527 -15.15338 -14.97090 -14.64452 -14.48999 -14.29937 -14.19799 -13.96991 -13.87324 -13.41397 -12.96040 -12.78042 -12.57712 -12.30885 -12.21886 -12.14516 -11.85338 -11.66151 -11.54657 -11.47072 -11.23250 -10.96967 -10.89833 -10.66808 -10.44336 -10.17504 -9.84469 -9.62199 -9.06577 -8.99839 -8.72288 -8.41868 -7.42513 -5.88469 -3.26131 0.95220 0.96274 2.10118 2.34493 2.71554 3.22293 3.29289 3.32068 3.38723 3.39465 3.80280 4.07722 4.24871 4.35664 4.48453 4.56823 4.65914 4.77459 4.91202 4.94815 4.97850 5.02726 5.05999 5.13232 5.26106 5.39047 5.45251 5.47420 5.53702 5.71003 5.75913 5.80678 5.83462 5.91167 6.03288 6.12218 6.25350 6.27094 6.36354 6.39545 6.47946 6.55029 6.70788 7.04372 7.36894 7.85305 7.95085 8.29952 9.06692 9.78860 9.96919 11.29134 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030890 B = 0.002527 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.220129 B =11078.512473 C =11323.601214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.128 3.872 3 H 0.079 0.921 4 C 0.180 3.820 5 H 0.077 0.923 6 N -0.739 5.739 7 C -0.252 4.252 8 H 0.093 0.907 9 C 0.010 3.990 10 N -0.928 5.928 11 Si 0.879 3.121 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.275 1.275 15 C -0.153 4.153 16 C 0.087 3.913 17 N -0.605 5.605 18 C 0.538 3.462 19 O -0.511 6.511 20 C 0.040 3.960 21 H 0.109 0.891 22 C 0.032 3.968 23 O -0.300 6.300 24 C 0.045 3.955 25 C -0.112 4.112 26 C -0.118 4.118 27 C -0.115 4.115 28 C -0.112 4.112 29 C 0.054 3.946 30 O -0.280 6.280 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.368 0.632 35 H 0.261 0.739 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.131 0.869 41 H 0.086 0.914 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.261 -3.958 -26.569 27.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.024 3.976 3 H 0.097 0.903 4 C 0.069 3.931 5 H 0.095 0.905 6 N -0.383 5.383 7 C -0.381 4.381 8 H 0.110 0.890 9 C -0.187 4.187 10 N -0.575 5.575 11 Si 0.709 3.291 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.201 1.201 15 C -0.194 4.194 16 C -0.035 4.035 17 N -0.340 5.340 18 C 0.323 3.677 19 O -0.385 6.385 20 C -0.021 4.021 21 H 0.126 0.874 22 C -0.044 4.044 23 O -0.214 6.214 24 C 0.001 3.999 25 C -0.131 4.131 26 C -0.136 4.136 27 C -0.133 4.133 28 C -0.130 4.130 29 C 0.009 3.991 30 O -0.193 6.193 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.204 0.796 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.149 0.851 41 H 0.104 0.896 42 H 0.153 0.847 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.912 -3.438 -26.449 27.318 hybrid contribution -1.281 -0.034 0.037 1.282 sum 4.630 -3.472 -26.411 27.038 Atomic orbital electron populations 1.22118 0.94871 1.02356 1.03090 1.21980 0.95234 0.96225 0.84117 0.90296 1.21148 0.93192 0.92174 0.86610 0.90462 1.42947 1.03500 1.88639 1.03220 1.19051 0.94918 1.43242 0.80897 0.88970 1.24663 0.97379 1.01531 0.95077 1.69688 1.32656 1.56264 0.98915 0.86667 0.86885 0.77994 0.77592 1.20935 1.21504 1.20135 1.23545 1.02115 1.01127 0.92592 1.22626 0.95153 0.88068 0.97686 1.48471 1.50419 1.30856 1.04280 1.19132 0.82315 0.84398 0.81819 1.90744 1.34814 1.30210 1.82773 1.22890 1.01866 0.92519 0.84798 0.87385 1.23635 0.97197 0.92396 0.91125 1.86350 1.75841 1.37685 1.21521 1.18982 1.03749 0.89161 0.88051 1.20461 1.02673 1.00564 0.89377 1.20934 1.01084 0.94059 0.97572 1.20938 1.00664 0.94363 0.97353 1.20488 1.01727 1.00640 0.90174 1.19028 1.02806 0.89588 0.87662 1.86397 1.84635 1.37019 1.11259 0.92551 0.90547 0.91428 0.79569 0.92873 0.90582 0.89684 0.91178 0.90775 0.85091 0.89580 0.84692 0.85002 0.84955 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 7.92 37.16 0.29 -2.48 16 2 C 0.13 2.01 3.51 -66.95 -0.23 1.77 16 3 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 4 C 0.18 3.08 3.48 -66.10 -0.23 2.85 16 5 H 0.08 1.33 8.09 -51.92 -0.42 0.91 16 6 N -0.74 -16.03 4.74 -51.65 -0.25 -16.27 16 7 C -0.25 -6.61 10.44 -15.06 -0.16 -6.77 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 9 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 10 N -0.93 -28.04 13.97 55.49 0.78 -27.26 16 11 Si 0.88 21.23 27.74 -169.99 -4.71 16.52 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.28 -6.23 6.48 56.52 0.37 -5.87 16 15 C -0.15 -2.12 6.77 -24.58 -0.17 -2.29 16 16 C 0.09 0.94 6.48 -2.53 -0.02 0.93 16 17 N -0.60 -8.12 3.08 -163.01 -0.50 -8.62 16 18 C 0.54 7.75 6.97 -10.99 -0.08 7.68 16 19 O -0.51 -9.29 15.33 -13.71 -0.21 -9.50 16 20 C 0.04 0.47 2.77 -27.64 -0.08 0.40 16 21 H 0.11 1.09 7.92 -51.93 -0.41 0.68 16 22 C 0.03 0.33 6.41 37.40 0.24 0.57 16 23 O -0.30 -3.34 10.42 -32.89 -0.34 -3.69 16 24 C 0.05 0.51 6.49 -39.14 -0.25 0.26 16 25 C -0.11 -1.01 9.96 -39.42 -0.39 -1.40 16 26 C -0.12 -0.87 10.04 -39.59 -0.40 -1.27 16 27 C -0.11 -0.88 10.04 -39.59 -0.40 -1.28 16 28 C -0.11 -1.11 9.96 -39.42 -0.39 -1.50 16 29 C 0.05 0.66 6.49 -39.14 -0.25 0.40 16 30 O -0.28 -3.87 9.66 -46.80 -0.45 -4.32 16 31 H 0.06 0.92 8.01 -51.93 -0.42 0.50 16 32 H 0.08 1.37 6.78 -51.93 -0.35 1.02 16 33 H 0.07 1.15 6.61 -51.93 -0.34 0.81 16 34 H 0.37 7.96 2.92 -40.82 -0.12 7.84 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 0.59 5.46 -51.93 -0.28 0.31 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.13 1.07 5.82 -51.93 -0.30 0.76 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 44 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 45 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -32.76 359.80 -8.92 -41.68 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.05 Total: 8.00 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.61 Total: -1.96 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.03 Total: -52.15 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -1.00 Total: -17.51 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.71 Total: 16.52 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.76 -8.92 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075085411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.161 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds